Wall clock time and date at job start Tue Mar 31 2020 13:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42899 * 109.47231 * 2 1 4 4 C 1.35351 * 116.99771 * 179.97438 * 3 2 1 5 5 N 1.30551 * 125.44371 * 180.02562 * 4 3 2 6 6 C 1.36335 * 108.38324 * 179.97438 * 5 4 3 7 7 C 1.47364 * 126.41119 * 179.73690 * 6 5 4 8 8 O 1.21629 * 119.99986 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00291 * 0.02643 * 7 6 5 10 10 C 1.46674 * 125.33957 * 179.97438 * 9 7 6 11 11 C 1.53730 * 107.94249 * 180.54480 * 10 9 7 12 12 H 1.08998 * 112.55938 * 139.71871 * 11 10 9 13 13 C 1.53686 * 109.33789 * 266.25396 * 11 10 9 14 14 N 1.46636 * 108.00779 * 127.56056 * 13 11 10 15 15 C 1.36944 * 125.33057 * 180.81629 * 14 13 11 16 16 H 1.07999 * 119.99846 * 180.02562 * 15 14 13 17 17 C 1.38807 * 119.99696 * 0.02562 * 15 14 13 18 18 N 1.31615 * 120.00258 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99860 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46818 * 60.00360 * 19 17 15 21 21 H 1.48497 * 109.47074 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.46895 * 300.00379 * 19 17 15 23 23 C 1.46747 * 109.34423 * 0.83023 * 14 13 11 24 24 C 1.53936 * 106.71862 * 341.66275 * 23 14 13 25 25 H 1.08996 * 113.00891 * 150.82759 * 24 23 14 26 26 C 1.46781 * 125.33936 * 359.69520 * 9 7 6 27 27 C 1.35911 * 107.17162 * 0.02562 * 6 5 4 28 28 O 1.34205 * 125.45155 * 359.97438 * 4 3 2 29 29 H 1.09003 * 109.46475 * 59.99815 * 1 2 3 30 30 H 1.08994 * 109.46986 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46957 * 299.99910 * 1 2 3 32 32 H 1.09006 * 109.46801 * 240.00365 * 2 1 3 33 33 H 1.08999 * 109.47095 * 120.00556 * 2 1 3 34 34 H 1.08996 * 109.77234 * 300.16491 * 10 9 7 35 35 H 1.08999 * 109.76621 * 60.92572 * 10 9 7 36 36 H 1.09006 * 109.76014 * 247.19729 * 13 11 10 37 37 H 1.08997 * 109.76697 * 7.91195 * 13 11 10 38 38 H 0.97003 * 120.00131 * 179.97438 * 18 17 15 39 39 H 1.08995 * 110.01346 * 222.34618 * 23 14 13 40 40 H 1.09005 * 110.00583 * 100.97154 * 23 14 13 41 41 H 1.08994 * 110.02159 * 280.77366 * 26 9 7 42 42 H 1.08993 * 110.02369 * 42.18764 * 26 9 7 43 43 H 1.08005 * 126.45558 * 179.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3483 1.5245 0.0005 5 7 3.9595 2.6781 0.0011 6 6 5.3040 2.4522 0.0021 7 6 6.3631 3.4769 -0.0025 8 8 7.5326 3.1427 -0.0014 9 7 6.0359 4.7843 -0.0077 10 6 6.9906 5.8978 -0.0121 11 6 6.1886 7.2093 -0.0035 12 1 6.6302 7.9652 0.6458 13 6 5.9937 7.6960 -1.4482 14 7 4.5624 7.9384 -1.6556 15 6 3.9930 8.3662 -2.8253 16 1 2.9252 8.5177 -2.8823 17 6 4.7884 8.6052 -3.9375 18 7 6.0896 8.4202 -3.8681 19 14 4.0118 9.1896 -5.5329 20 1 3.3200 10.4831 -5.3019 21 1 5.0682 9.3693 -6.5609 22 1 3.0298 8.1802 -6.0041 23 6 3.8357 7.6510 -0.4135 24 6 4.7656 6.7824 0.4527 25 1 4.5987 6.9147 1.5217 26 6 4.6683 5.3172 -0.0158 27 6 5.4846 1.1052 0.0015 28 8 4.2631 0.5426 0.0016 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 7.6218 5.8458 0.8750 35 1 7.6091 5.8496 -0.9083 36 1 6.5503 8.6202 -1.6039 37 1 6.3431 6.9337 -2.1443 38 1 6.6453 8.5869 -4.6455 39 1 2.9176 7.1073 -0.6358 40 1 3.6028 8.5806 0.1059 41 1 4.2559 5.2715 -1.0237 42 1 4.0417 4.7476 0.6705 43 1 6.4309 0.5846 0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048919997.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:18 Heat of formation + Delta-G solvation = -0.883027 kcal Electronic energy + Delta-G solvation = -27596.290463 eV Core-core repulsion = 23645.336057 eV Total energy + Delta-G solvation = -3950.954406 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.55805 -40.00474 -39.17914 -38.06450 -35.13700 -34.75196 -32.33415 -32.14529 -30.35644 -29.55091 -29.30539 -25.92435 -25.34566 -24.36241 -23.83168 -22.69353 -22.03462 -20.12790 -19.98147 -19.19203 -18.38125 -17.74640 -17.23374 -16.70795 -16.48186 -15.98572 -15.76888 -15.17171 -15.07189 -14.61529 -14.22222 -13.71278 -13.59513 -13.28183 -13.16051 -13.03340 -12.78961 -12.66730 -12.16756 -11.97337 -11.92259 -11.67786 -11.42250 -11.32388 -11.02626 -10.84492 -10.80348 -10.64918 -10.34679 -10.07031 -9.97285 -9.94800 -9.69031 -9.55361 -8.84715 -8.54545 -8.19987 -6.76950 -5.66749 -2.99928 1.03316 1.72449 2.00812 2.54535 3.18773 3.41194 3.44084 3.48182 3.49541 4.31777 4.38504 4.39324 4.54420 4.70181 4.76288 4.84133 5.01429 5.15498 5.25604 5.29469 5.37281 5.41659 5.56813 5.58292 5.62532 5.69242 5.80362 5.89452 6.06389 6.19228 6.31171 6.40072 6.50698 6.55663 6.66516 6.68954 6.74929 6.93826 7.41590 7.61631 7.63869 7.79341 7.87078 8.29589 8.32619 9.27733 9.88462 10.52570 11.44790 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012037 B = 0.003767 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.550968 B = 7431.447545 C = 8622.281152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 O -0.244 6.244 4 C 0.379 3.621 5 N -0.445 5.445 6 C -0.034 4.034 7 C 0.610 3.390 8 O -0.546 6.546 9 N -0.586 5.586 10 C 0.121 3.879 11 C -0.124 4.124 12 H 0.091 0.909 13 C 0.185 3.815 14 N -0.602 5.602 15 C -0.228 4.228 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.922 5.922 19 Si 0.911 3.089 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.286 1.286 23 C 0.146 3.854 24 C -0.114 4.114 25 H 0.088 0.912 26 C 0.118 3.882 27 C -0.004 4.004 28 O -0.228 6.228 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.051 0.949 38 H 0.252 0.748 39 H 0.039 0.961 40 H 0.019 0.981 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.317 -17.260 11.448 21.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.152 6.152 4 C 0.133 3.867 5 N -0.191 5.191 6 C -0.153 4.153 7 C 0.397 3.603 8 O -0.425 6.425 9 N -0.316 5.316 10 C -0.002 4.002 11 C -0.144 4.144 12 H 0.109 0.891 13 C 0.060 3.940 14 N -0.328 5.328 15 C -0.356 4.356 16 H 0.096 0.904 17 C -0.203 4.203 18 N -0.569 5.569 19 Si 0.742 3.258 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 C 0.019 3.981 24 C -0.134 4.134 25 H 0.106 0.894 26 C -0.004 4.004 27 C -0.077 4.077 28 O -0.120 6.120 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.037 0.963 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -6.168 -16.784 11.212 21.106 hybrid contribution -0.110 -0.538 -0.965 1.111 sum -6.278 -17.322 10.247 21.082 Atomic orbital electron populations 1.21811 0.91251 1.03537 1.04350 1.23038 0.96872 0.79512 1.02917 1.86405 1.08980 1.30605 1.89216 1.23457 0.83442 0.81655 0.98103 1.71377 1.03915 1.20752 1.23051 1.21646 0.90217 0.93829 1.09621 1.16214 0.85955 0.80506 0.77582 1.90811 1.17950 1.80927 1.52784 1.48033 1.09648 1.04354 1.69607 1.21900 0.91595 0.84789 1.01867 1.23168 0.94446 0.95301 1.01454 0.89071 1.21105 0.85617 0.99569 0.87665 1.44196 1.02375 1.78788 1.07486 1.18997 0.92039 1.37551 0.87045 0.90446 1.24784 0.95637 1.01831 0.98090 1.69946 1.02985 1.54736 1.29271 0.86206 0.77830 0.78561 0.83208 1.21183 1.21652 1.21244 1.21157 0.94108 0.95105 0.87681 1.22996 0.96680 0.94501 0.99193 0.89363 1.22273 0.82159 0.92966 1.03004 1.24878 0.85771 0.92789 1.04224 1.84366 1.16237 1.39306 1.72045 0.90830 0.89552 0.90942 0.90847 0.90921 0.92010 0.90585 0.93759 0.93133 0.93729 0.94285 0.96327 0.90187 0.89674 0.74852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 10.28 37.16 0.38 -0.39 16 2 C 0.05 0.36 6.38 37.16 0.24 0.60 16 3 O -0.24 -2.79 10.19 -40.97 -0.42 -3.21 16 4 C 0.38 5.04 8.98 52.22 0.47 5.51 16 5 N -0.45 -7.07 8.56 -11.72 -0.10 -7.17 16 6 C -0.03 -0.53 6.81 -82.99 -0.56 -1.10 16 7 C 0.61 11.02 7.83 -12.55 -0.10 10.92 16 8 O -0.55 -10.67 17.20 5.25 0.09 -10.58 16 9 N -0.59 -10.77 3.31 -173.46 -0.57 -11.35 16 10 C 0.12 2.18 6.23 -3.57 -0.02 2.15 16 11 C -0.12 -2.31 4.02 -88.60 -0.36 -2.67 16 12 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 13 C 0.19 4.48 4.75 -3.61 -0.02 4.46 16 14 N -0.60 -15.34 3.37 -171.93 -0.58 -15.92 16 15 C -0.23 -6.39 10.25 -15.06 -0.15 -6.54 16 16 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 17 C -0.01 -0.21 5.48 -17.43 -0.10 -0.30 16 18 N -0.92 -27.30 10.25 55.49 0.57 -26.73 16 19 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 C 0.15 3.01 6.37 -3.42 -0.02 2.99 16 24 C -0.11 -2.00 4.19 -88.26 -0.37 -2.36 16 25 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 26 C 0.12 2.14 5.18 -3.29 -0.02 2.12 16 27 C 0.00 -0.05 11.93 29.90 0.36 0.30 16 28 O -0.23 -2.62 10.20 -17.74 -0.18 -2.80 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.49 7.44 -51.93 -0.39 1.11 16 36 H 0.04 1.19 7.46 -51.93 -0.39 0.80 16 37 H 0.05 1.38 6.50 -51.93 -0.34 1.05 16 38 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.04 0.79 7.94 -51.93 -0.41 0.38 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 1.70 7.72 -51.93 -0.40 1.30 16 42 H 0.09 1.44 6.44 -51.93 -0.33 1.11 16 43 H 0.24 1.98 8.06 -52.48 -0.42 1.56 16 LS Contribution 353.59 15.07 5.33 5.33 Total: -1.00 -33.74 353.59 -7.19 -40.93 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -6.03 Total: -1.55 kcal Atomic # 6 Polarization: 15.97 SS G_CDS: -0.27 Total: 15.69 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: -0.69 Total: -61.17 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.51 Total: -16.60 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.74 -7.19 -40.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048919997.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.052 kcal (2) G-P(sol) polarization free energy of solvation -33.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds