Wall clock time and date at job start Tue Mar 31 2020 13:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42899 * 109.47231 * 2 1 4 4 C 1.35351 * 116.99771 * 179.97438 * 3 2 1 5 5 N 1.30551 * 125.44371 * 180.02562 * 4 3 2 6 6 C 1.36335 * 108.38324 * 179.97438 * 5 4 3 7 7 C 1.47364 * 126.41119 * 179.73690 * 6 5 4 8 8 O 1.21629 * 119.99986 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00291 * 0.02643 * 7 6 5 10 10 C 1.46674 * 125.33957 * 179.97438 * 9 7 6 11 11 C 1.53730 * 107.94249 * 180.54480 * 10 9 7 12 12 H 1.08998 * 112.55938 * 139.71871 * 11 10 9 13 13 C 1.53686 * 109.33789 * 266.25396 * 11 10 9 14 14 N 1.46636 * 108.00779 * 127.56056 * 13 11 10 15 15 C 1.36944 * 125.33057 * 180.81629 * 14 13 11 16 16 H 1.07999 * 119.99846 * 180.02562 * 15 14 13 17 17 C 1.38807 * 119.99696 * 0.02562 * 15 14 13 18 18 N 1.31615 * 120.00258 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99860 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46818 * 60.00360 * 19 17 15 21 21 H 1.48497 * 109.47074 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.46895 * 300.00379 * 19 17 15 23 23 C 1.46747 * 109.34423 * 0.83023 * 14 13 11 24 24 C 1.53936 * 106.71862 * 341.66275 * 23 14 13 25 25 H 1.08996 * 113.00891 * 150.82759 * 24 23 14 26 26 C 1.46781 * 125.33936 * 359.69520 * 9 7 6 27 27 C 1.35911 * 107.17162 * 0.02562 * 6 5 4 28 28 O 1.34205 * 125.45155 * 359.97438 * 4 3 2 29 29 H 1.09003 * 109.46475 * 59.99815 * 1 2 3 30 30 H 1.08994 * 109.46986 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46957 * 299.99910 * 1 2 3 32 32 H 1.09006 * 109.46801 * 240.00365 * 2 1 3 33 33 H 1.08999 * 109.47095 * 120.00556 * 2 1 3 34 34 H 1.08996 * 109.77234 * 300.16491 * 10 9 7 35 35 H 1.08999 * 109.76621 * 60.92572 * 10 9 7 36 36 H 1.09006 * 109.76014 * 247.19729 * 13 11 10 37 37 H 1.08997 * 109.76697 * 7.91195 * 13 11 10 38 38 H 0.97003 * 120.00131 * 179.97438 * 18 17 15 39 39 H 1.08995 * 110.01346 * 222.34618 * 23 14 13 40 40 H 1.09005 * 110.00583 * 100.97154 * 23 14 13 41 41 H 1.08994 * 110.02159 * 280.77366 * 26 9 7 42 42 H 1.08993 * 110.02369 * 42.18764 * 26 9 7 43 43 H 1.08005 * 126.45558 * 179.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3483 1.5245 0.0005 5 7 3.9595 2.6781 0.0011 6 6 5.3040 2.4522 0.0021 7 6 6.3631 3.4769 -0.0025 8 8 7.5326 3.1427 -0.0014 9 7 6.0359 4.7843 -0.0077 10 6 6.9906 5.8978 -0.0121 11 6 6.1886 7.2093 -0.0035 12 1 6.6302 7.9652 0.6458 13 6 5.9937 7.6960 -1.4482 14 7 4.5624 7.9384 -1.6556 15 6 3.9930 8.3662 -2.8253 16 1 2.9252 8.5177 -2.8823 17 6 4.7884 8.6052 -3.9375 18 7 6.0896 8.4202 -3.8681 19 14 4.0118 9.1896 -5.5329 20 1 3.3200 10.4831 -5.3019 21 1 5.0682 9.3693 -6.5609 22 1 3.0298 8.1802 -6.0041 23 6 3.8357 7.6510 -0.4135 24 6 4.7656 6.7824 0.4527 25 1 4.5987 6.9147 1.5217 26 6 4.6683 5.3172 -0.0158 27 6 5.4846 1.1052 0.0015 28 8 4.2631 0.5426 0.0016 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 7.6218 5.8458 0.8750 35 1 7.6091 5.8496 -0.9083 36 1 6.5503 8.6202 -1.6039 37 1 6.3431 6.9337 -2.1443 38 1 6.6453 8.5869 -4.6455 39 1 2.9176 7.1073 -0.6358 40 1 3.6028 8.5806 0.1059 41 1 4.2559 5.2715 -1.0237 42 1 4.0417 4.7476 0.6705 43 1 6.4309 0.5846 0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048919997.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:18 Heat of formation + Delta-G solvation = -25.850403 kcal Electronic energy + Delta-G solvation = -27597.373130 eV Core-core repulsion = 23645.336057 eV Total energy + Delta-G solvation = -3952.037073 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.56731 -41.47644 -40.03572 -39.54643 -36.63224 -36.06123 -34.09189 -32.89480 -31.92871 -31.09847 -30.58135 -27.64762 -27.02156 -25.72903 -24.64666 -23.93159 -23.14525 -21.81534 -21.19462 -20.74157 -19.55356 -18.87268 -18.66942 -18.29088 -17.56512 -17.32016 -16.74383 -16.46106 -16.43256 -15.97668 -15.85500 -15.51123 -14.75130 -14.55446 -14.34850 -14.27554 -13.92373 -13.64171 -13.59508 -13.47306 -13.27442 -13.04722 -12.72380 -12.67545 -12.66032 -12.54112 -12.02311 -11.92520 -11.89259 -11.85108 -11.79365 -11.46931 -11.35858 -11.21414 -10.67309 -9.93099 -9.58508 -8.85099 -7.83269 -5.18034 -0.01148 0.82122 0.90132 1.44935 1.48476 1.54578 1.62405 1.92424 2.12822 2.50664 3.11029 3.34687 3.47314 3.62797 3.70805 3.86808 3.93249 3.94661 3.96240 4.04955 4.25850 4.30918 4.32909 4.38357 4.53062 4.58102 4.69480 4.80102 4.84735 4.85963 4.87349 4.96940 5.08138 5.12908 5.19284 5.25593 5.41931 5.48936 5.65112 5.65976 5.78786 6.23256 6.33156 6.45920 6.92588 7.13251 7.82384 8.43997 9.26658 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012037 B = 0.003767 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.550968 B = 7431.447545 C = 8622.281152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.041 3.959 3 O -0.257 6.257 4 C 0.385 3.615 5 N -0.480 5.480 6 C -0.076 4.076 7 C 0.609 3.391 8 O -0.567 6.567 9 N -0.595 5.595 10 C 0.124 3.876 11 C -0.111 4.111 12 H 0.122 0.878 13 C 0.198 3.802 14 N -0.623 5.623 15 C -0.241 4.241 16 H 0.083 0.917 17 C -0.066 4.066 18 N -0.951 5.951 19 Si 0.977 3.023 20 H -0.274 1.274 21 H -0.296 1.296 22 H -0.280 1.280 23 C 0.141 3.859 24 C -0.097 4.097 25 H 0.134 0.866 26 C 0.132 3.868 27 C 0.034 3.966 28 O -0.213 6.213 29 H 0.064 0.936 30 H 0.113 0.887 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.049 0.951 36 H 0.009 0.991 37 H 0.006 0.994 38 H 0.245 0.755 39 H 0.040 0.960 40 H 0.034 0.966 41 H 0.039 0.961 42 H 0.100 0.900 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.605 -18.840 13.179 24.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 O -0.166 6.166 4 C 0.138 3.862 5 N -0.227 5.227 6 C -0.193 4.193 7 C 0.398 3.602 8 O -0.448 6.448 9 N -0.325 5.325 10 C 0.002 3.998 11 C -0.131 4.131 12 H 0.140 0.860 13 C 0.073 3.927 14 N -0.350 5.350 15 C -0.370 4.370 16 H 0.101 0.899 17 C -0.259 4.259 18 N -0.600 5.600 19 Si 0.805 3.195 20 H -0.200 1.200 21 H -0.222 1.222 22 H -0.206 1.206 23 C 0.015 3.985 24 C -0.117 4.117 25 H 0.151 0.849 26 C 0.010 3.990 27 C -0.039 4.039 28 O -0.104 6.104 29 H 0.083 0.917 30 H 0.131 0.869 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.067 0.933 36 H 0.027 0.973 37 H 0.025 0.975 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.118 0.882 43 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -7.504 -18.374 12.975 23.712 hybrid contribution 0.209 -0.161 -1.512 1.535 sum -7.295 -18.535 11.463 22.982 Atomic orbital electron populations 1.21865 0.89865 1.05077 1.03801 1.23451 0.97921 0.77744 1.04171 1.86438 1.07841 1.33369 1.88928 1.23418 0.84201 0.81428 0.97156 1.71214 1.04338 1.22462 1.24656 1.21395 0.89862 0.94554 1.13511 1.16560 0.86375 0.80692 0.76614 1.90781 1.18954 1.81264 1.53826 1.48126 1.09580 1.04768 1.70023 1.21819 0.91576 0.84580 1.01841 1.23044 0.95816 0.96174 0.98032 0.86015 1.20778 0.84783 0.96595 0.90567 1.44499 1.03382 1.78579 1.08492 1.19418 0.92519 1.36742 0.88308 0.89892 1.25629 0.96165 1.02729 1.01396 1.70193 1.04223 1.56081 1.29527 0.85179 0.76828 0.78444 0.79065 1.19953 1.22221 1.20610 1.21356 0.94443 0.96244 0.86418 1.23053 0.94585 0.93091 1.00945 0.84861 1.22057 0.82219 0.93713 1.01025 1.25534 0.86724 0.91673 0.99934 1.84418 1.15905 1.38533 1.71566 0.91710 0.86897 0.91147 0.89956 0.89280 0.89266 0.93280 0.97312 0.97539 0.94598 0.94168 0.94818 0.94231 0.88200 0.71381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 71.98 0.74 -0.48 16 2 C 0.04 0.48 6.38 71.98 0.46 0.94 16 3 O -0.26 -5.56 10.19 -64.19 -0.65 -6.22 16 4 C 0.38 9.70 8.98 130.43 1.17 10.87 16 5 N -0.48 -14.96 8.56 -419.39 -3.59 -18.55 16 6 C -0.08 -2.29 6.81 40.31 0.27 -2.02 16 7 C 0.61 21.84 7.83 86.65 0.68 22.52 16 8 O -0.57 -22.00 17.20 -4.12 -0.07 -22.08 16 9 N -0.59 -21.82 3.31 -820.97 -2.72 -24.54 16 10 C 0.12 4.46 6.23 86.59 0.54 5.00 16 11 C -0.11 -4.06 4.02 -9.49 -0.04 -4.10 16 12 H 0.12 3.76 8.14 -2.39 -0.02 3.74 16 13 C 0.20 9.96 4.75 86.58 0.41 10.37 16 14 N -0.62 -32.46 3.37 -697.87 -2.35 -34.81 16 15 C -0.24 -13.79 10.25 84.03 0.86 -12.93 16 16 H 0.08 4.52 7.83 -2.91 -0.02 4.49 16 17 C -0.07 -3.88 5.48 84.86 0.47 -3.41 16 18 N -0.95 -58.93 10.25 21.65 0.22 -58.71 16 19 Si 0.98 47.04 29.55 68.60 2.03 49.07 16 20 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 22 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 23 C 0.14 5.68 6.37 86.65 0.55 6.23 16 24 C -0.10 -3.23 4.19 -9.26 -0.04 -3.27 16 25 H 0.13 3.36 8.14 -2.39 -0.02 3.35 16 26 C 0.13 4.74 5.18 86.71 0.45 5.19 16 27 C 0.03 0.74 11.93 67.28 0.80 1.54 16 28 O -0.21 -4.39 10.20 18.94 0.19 -4.20 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.11 0.33 8.14 -2.39 -0.02 0.32 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.05 2.02 7.44 -2.39 -0.02 2.00 16 36 H 0.01 0.49 7.46 -2.38 -0.02 0.47 16 37 H 0.01 0.38 6.50 -2.39 -0.02 0.36 16 38 H 0.24 14.86 8.31 -92.71 -0.77 14.09 16 39 H 0.04 1.61 7.94 -2.39 -0.02 1.59 16 40 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 41 H 0.04 1.73 7.72 -2.39 -0.02 1.71 16 42 H 0.10 3.29 6.44 -2.39 -0.02 3.28 16 43 H 0.27 3.63 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -77.12 353.59 1.41 -75.71 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: 1.02 Total: 7.86 kcal Atomic # 6 Polarization: 29.13 SS G_CDS: 7.33 Total: 36.46 kcal Atomic # 7 Polarization: -128.17 SS G_CDS: -8.44 Total: -136.60 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -0.53 Total: -32.49 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -77.12 1.41 -75.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048919997.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.856 kcal (2) G-P(sol) polarization free energy of solvation -77.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds