Wall clock time and date at job start Tue Mar 31 2020 13:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99948 * 2 1 4 4 C 1.50706 * 109.47147 * 179.97438 * 3 2 1 5 5 C 1.35314 * 126.66288 * 90.00092 * 4 3 2 6 6 C 1.42268 * 103.91980 * 180.02562 * 5 4 3 7 7 C 1.48339 * 126.93687 * 179.97438 * 6 5 4 8 8 O 1.21495 * 119.99902 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99623 * 179.97438 * 7 6 5 10 10 C 1.46670 * 125.33449 * 180.02562 * 9 7 6 11 11 C 1.53718 * 107.94262 * 180.54456 * 10 9 7 12 12 H 1.09007 * 112.56059 * 139.71898 * 11 10 9 13 13 C 1.53686 * 109.34584 * 266.25116 * 11 10 9 14 14 N 1.46642 * 108.00830 * 127.55466 * 13 11 10 15 15 C 1.36941 * 125.32920 * 180.81809 * 14 13 11 16 16 H 1.08001 * 120.00051 * 180.02562 * 15 14 13 17 17 C 1.38806 * 120.00060 * 0.02914 * 15 14 13 18 18 N 1.31620 * 119.99808 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00072 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47445 * 59.99570 * 19 17 15 21 21 H 1.48508 * 109.46897 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46984 * 299.99296 * 19 17 15 23 23 C 1.46750 * 109.34198 * 0.84135 * 14 13 11 24 24 C 1.53932 * 106.71698 * 341.65712 * 23 14 13 25 25 H 1.09000 * 113.00766 * 150.83209 * 24 23 14 26 26 C 1.46775 * 125.34275 * 359.69712 * 9 7 6 27 27 N 1.30985 * 106.12640 * 0.02562 * 6 5 4 28 28 O 1.20908 * 111.43826 * 359.70133 * 27 6 5 29 29 H 1.08999 * 109.47444 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47354 * 300.00131 * 1 2 3 31 31 H 1.09003 * 109.47182 * 59.99587 * 1 2 3 32 32 H 1.09001 * 109.46798 * 60.00190 * 3 2 1 33 33 H 1.09000 * 109.47736 * 300.00432 * 3 2 1 34 34 H 1.07997 * 128.03886 * 0.02562 * 5 4 3 35 35 H 1.08999 * 109.77110 * 300.17330 * 10 9 7 36 36 H 1.09005 * 109.77158 * 60.92491 * 10 9 7 37 37 H 1.08997 * 109.76640 * 247.19849 * 13 11 10 38 38 H 1.08999 * 109.76110 * 7.92173 * 13 11 10 39 39 H 0.97006 * 120.00021 * 180.02562 * 18 17 15 40 40 H 1.08997 * 110.00567 * 222.34459 * 23 14 13 41 41 H 1.09002 * 110.00691 * 100.97136 * 23 14 13 42 42 H 1.09002 * 110.02750 * 280.77600 * 26 9 7 43 43 H 1.09004 * 110.02072 * 42.19021 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.3185 1.1225 -1.0845 6 6 5.6262 1.0184 -0.5339 7 6 6.9029 0.9164 -1.2822 8 8 6.8966 0.9170 -2.4972 9 7 8.0699 0.8240 -0.6143 10 6 9.3954 0.7188 -1.2332 11 6 10.4375 0.6225 -0.1072 12 1 11.2279 -0.0946 -0.3290 13 6 10.9720 2.0274 0.2133 14 7 10.8367 2.2454 1.6571 15 6 11.1911 3.3890 2.3219 16 1 11.0539 3.4567 3.3910 17 6 11.7266 4.4612 1.6216 18 7 11.8942 4.3786 0.3188 19 14 12.2107 6.0209 2.5285 20 1 13.2465 5.7021 3.5437 21 1 12.7538 7.0079 1.5608 22 1 11.0170 6.5926 3.2020 23 6 10.2626 1.0462 2.2781 24 6 9.6074 0.2325 1.1475 25 1 9.6009 -0.8398 1.3429 26 6 8.2141 0.8199 0.8464 27 7 5.4751 1.0296 0.7672 28 8 4.3102 1.1278 1.0760 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 4.0349 1.1452 -2.1263 35 1 9.4417 -0.1746 -1.8559 36 1 9.5899 1.6025 -1.8409 37 1 12.0214 2.0967 -0.0731 38 1 10.3920 2.7747 -0.3281 39 1 12.2688 5.1277 -0.1706 40 1 9.5123 1.3310 3.0157 41 1 11.0489 0.4592 2.7527 42 1 8.1433 1.8372 1.2314 43 1 7.4419 0.1955 1.2958 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049102327.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:53 Heat of formation + Delta-G solvation = 30.557237 kcal Electronic energy + Delta-G solvation = -27313.305696 eV Core-core repulsion = 23363.714642 eV Total energy + Delta-G solvation = -3949.591054 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.20898 -40.13701 -38.39064 -38.21636 -34.99967 -34.14394 -32.97984 -32.18817 -30.32843 -29.43053 -28.14350 -26.18958 -25.98241 -25.46903 -24.42239 -23.04580 -22.08041 -20.09123 -19.46230 -19.22720 -18.06240 -17.63832 -17.09459 -16.67817 -16.67475 -16.26693 -15.96326 -15.32237 -15.16462 -14.71562 -14.31601 -13.98936 -13.70841 -13.34884 -13.16873 -12.91476 -12.78291 -12.63089 -12.11555 -12.05544 -11.98550 -11.64090 -11.45570 -11.34741 -10.90696 -10.79609 -10.54256 -10.45397 -10.26098 -10.13304 -10.09220 -10.04467 -9.85602 -9.79866 -9.63173 -8.60881 -8.39836 -6.84109 -5.72665 -3.06434 0.97846 1.45804 2.59540 2.93911 3.22647 3.40249 3.44460 3.45835 3.57076 3.88629 4.23696 4.49140 4.58536 4.67099 4.81925 4.84868 4.90062 4.92567 4.97982 5.15513 5.23671 5.24760 5.31225 5.50422 5.58385 5.65271 5.66931 5.76330 5.93291 6.01795 6.18848 6.28392 6.38954 6.50060 6.52703 6.57617 6.63741 6.82281 7.53070 7.55600 7.62617 7.80331 7.85462 8.17503 8.25985 9.21396 9.81918 10.45552 11.38865 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017127 B = 0.003064 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.465409 B = 9134.821198 C = 9764.737491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.146 3.854 4 C -0.045 4.045 5 C -0.153 4.153 6 C -0.020 4.020 7 C 0.607 3.393 8 O -0.532 6.532 9 N -0.590 5.590 10 C 0.121 3.879 11 C -0.123 4.123 12 H 0.093 0.907 13 C 0.185 3.815 14 N -0.602 5.602 15 C -0.230 4.230 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.922 5.922 19 Si 0.913 3.087 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.146 3.854 24 C -0.112 4.112 25 H 0.090 0.910 26 C 0.113 3.887 27 N -0.314 5.314 28 O 0.131 5.869 29 H 0.091 0.909 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.182 0.818 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.046 0.954 38 H 0.051 0.949 39 H 0.253 0.747 40 H 0.039 0.961 41 H 0.021 0.979 42 H 0.082 0.918 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.171 -9.236 -1.237 22.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.069 3.931 4 C -0.108 4.108 5 C -0.175 4.175 6 C -0.178 4.178 7 C 0.392 3.608 8 O -0.409 6.409 9 N -0.322 5.322 10 C -0.001 4.001 11 C -0.143 4.143 12 H 0.112 0.888 13 C 0.060 3.940 14 N -0.329 5.329 15 C -0.358 4.358 16 H 0.096 0.904 17 C -0.203 4.203 18 N -0.569 5.569 19 Si 0.743 3.257 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.019 3.981 24 C -0.132 4.132 25 H 0.109 0.891 26 C -0.010 4.010 27 N -0.013 5.013 28 O 0.052 5.948 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.200 0.800 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.039 0.961 42 H 0.100 0.900 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.095 -9.246 -1.008 21.240 hybrid contribution -0.226 1.135 -0.269 1.188 sum -19.321 -8.111 -1.276 20.993 Atomic orbital electron populations 1.22818 0.79768 1.03439 1.00456 1.87980 1.20487 1.26388 1.95566 1.20634 0.83142 0.86092 1.03232 1.23872 0.94979 1.06097 0.85900 1.22446 0.89716 1.03929 1.01454 1.23462 0.96690 1.07693 0.90001 1.16398 0.80685 0.77883 0.85785 1.90779 1.86172 1.51694 1.12206 1.48105 1.05748 1.69649 1.08667 1.21926 0.80304 1.01961 0.95905 1.23182 0.96380 1.01681 0.93064 0.88839 1.21119 0.99516 0.88271 0.85112 1.44207 1.73532 1.11969 1.03186 1.18993 1.35171 0.90057 0.91600 0.90397 1.24804 1.01312 0.98408 0.95824 1.69945 1.50185 1.31204 1.05581 0.86189 0.78297 0.82853 0.78357 1.21130 1.21614 1.21180 1.21164 0.95028 0.88587 0.93311 1.22973 0.93673 0.99225 0.97288 0.89138 1.22299 0.97321 1.02439 0.78932 1.74366 0.96688 1.14509 1.15699 1.84820 1.11593 1.65080 1.33259 0.89078 0.93476 0.93548 0.90312 0.89334 0.80023 0.91814 0.90392 0.93598 0.93127 0.93652 0.94307 0.96107 0.89995 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -3.28 10.69 -35.23 -0.38 -3.65 16 3 C 0.15 1.03 6.50 36.01 0.23 1.26 16 4 C -0.05 -0.49 7.10 -35.35 -0.25 -0.75 16 5 C -0.15 -1.92 10.92 -39.08 -0.43 -2.35 16 6 C -0.02 -0.31 7.01 -82.52 -0.58 -0.89 16 7 C 0.61 11.17 7.86 -12.10 -0.10 11.07 16 8 O -0.53 -10.77 17.26 5.37 0.09 -10.68 16 9 N -0.59 -10.78 3.31 -173.09 -0.57 -11.36 16 10 C 0.12 2.16 6.23 -3.58 -0.02 2.14 16 11 C -0.12 -2.26 4.02 -88.61 -0.36 -2.62 16 12 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 13 C 0.18 4.41 4.75 -3.61 -0.02 4.39 16 14 N -0.60 -15.14 3.37 -171.93 -0.58 -15.72 16 15 C -0.23 -6.37 10.25 -15.06 -0.15 -6.52 16 16 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 17 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 18 N -0.92 -27.08 10.25 55.49 0.57 -26.51 16 19 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 C 0.15 2.94 6.37 -3.42 -0.02 2.92 16 24 C -0.11 -1.92 4.19 -88.24 -0.37 -2.29 16 25 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 26 C 0.11 1.99 5.22 -3.28 -0.02 1.97 16 27 N -0.31 -4.84 9.38 33.30 0.31 -4.53 16 28 O 0.13 1.71 11.18 17.24 0.19 1.91 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.05 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.18 1.91 8.06 -52.49 -0.42 1.49 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.08 1.51 7.44 -51.93 -0.39 1.13 16 37 H 0.05 1.21 7.45 -51.93 -0.39 0.83 16 38 H 0.05 1.37 6.51 -51.93 -0.34 1.03 16 39 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.04 0.77 7.94 -51.93 -0.41 0.36 16 41 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 1.68 7.72 -51.93 -0.40 1.28 16 43 H 0.08 1.24 6.52 -51.93 -0.34 0.90 16 LS Contribution 354.28 15.07 5.34 5.34 Total: -1.00 -33.59 354.28 -7.14 -40.73 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -6.04 Total: -2.00 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: -1.06 Total: 9.30 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -0.27 Total: -58.12 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -0.09 Total: -12.43 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.59 -7.14 -40.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049102327.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.290 kcal (2) G-P(sol) polarization free energy of solvation -33.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds