Wall clock time and date at job start Tue Mar 31 2020 13:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99948 * 2 1 4 4 C 1.50706 * 109.47147 * 179.97438 * 3 2 1 5 5 C 1.35314 * 126.66288 * 90.00092 * 4 3 2 6 6 C 1.42268 * 103.91980 * 180.02562 * 5 4 3 7 7 C 1.48339 * 126.93687 * 179.97438 * 6 5 4 8 8 O 1.21495 * 119.99902 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99623 * 179.97438 * 7 6 5 10 10 C 1.46670 * 125.33449 * 180.02562 * 9 7 6 11 11 C 1.53718 * 107.94262 * 180.54456 * 10 9 7 12 12 H 1.09007 * 112.56059 * 139.71898 * 11 10 9 13 13 C 1.53686 * 109.34584 * 266.25116 * 11 10 9 14 14 N 1.46642 * 108.00830 * 127.55466 * 13 11 10 15 15 C 1.36941 * 125.32920 * 180.81809 * 14 13 11 16 16 H 1.08001 * 120.00051 * 180.02562 * 15 14 13 17 17 C 1.38806 * 120.00060 * 0.02914 * 15 14 13 18 18 N 1.31620 * 119.99808 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00072 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47445 * 59.99570 * 19 17 15 21 21 H 1.48508 * 109.46897 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46984 * 299.99296 * 19 17 15 23 23 C 1.46750 * 109.34198 * 0.84135 * 14 13 11 24 24 C 1.53932 * 106.71698 * 341.65712 * 23 14 13 25 25 H 1.09000 * 113.00766 * 150.83209 * 24 23 14 26 26 C 1.46775 * 125.34275 * 359.69712 * 9 7 6 27 27 N 1.30985 * 106.12640 * 0.02562 * 6 5 4 28 28 O 1.20908 * 111.43826 * 359.70133 * 27 6 5 29 29 H 1.08999 * 109.47444 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47354 * 300.00131 * 1 2 3 31 31 H 1.09003 * 109.47182 * 59.99587 * 1 2 3 32 32 H 1.09001 * 109.46798 * 60.00190 * 3 2 1 33 33 H 1.09000 * 109.47736 * 300.00432 * 3 2 1 34 34 H 1.07997 * 128.03886 * 0.02562 * 5 4 3 35 35 H 1.08999 * 109.77110 * 300.17330 * 10 9 7 36 36 H 1.09005 * 109.77158 * 60.92491 * 10 9 7 37 37 H 1.08997 * 109.76640 * 247.19849 * 13 11 10 38 38 H 1.08999 * 109.76110 * 7.92173 * 13 11 10 39 39 H 0.97006 * 120.00021 * 180.02562 * 18 17 15 40 40 H 1.08997 * 110.00567 * 222.34459 * 23 14 13 41 41 H 1.09002 * 110.00691 * 100.97136 * 23 14 13 42 42 H 1.09002 * 110.02750 * 280.77600 * 26 9 7 43 43 H 1.09004 * 110.02072 * 42.19021 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.3185 1.1225 -1.0845 6 6 5.6262 1.0184 -0.5339 7 6 6.9029 0.9164 -1.2822 8 8 6.8966 0.9170 -2.4972 9 7 8.0699 0.8240 -0.6143 10 6 9.3954 0.7188 -1.2332 11 6 10.4375 0.6225 -0.1072 12 1 11.2279 -0.0946 -0.3290 13 6 10.9720 2.0274 0.2133 14 7 10.8367 2.2454 1.6571 15 6 11.1911 3.3890 2.3219 16 1 11.0539 3.4567 3.3910 17 6 11.7266 4.4612 1.6216 18 7 11.8942 4.3786 0.3188 19 14 12.2107 6.0209 2.5285 20 1 13.2465 5.7021 3.5437 21 1 12.7538 7.0079 1.5608 22 1 11.0170 6.5926 3.2020 23 6 10.2626 1.0462 2.2781 24 6 9.6074 0.2325 1.1475 25 1 9.6009 -0.8398 1.3429 26 6 8.2141 0.8199 0.8464 27 7 5.4751 1.0296 0.7672 28 8 4.3102 1.1278 1.0760 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 4.0349 1.1452 -2.1263 35 1 9.4417 -0.1746 -1.8559 36 1 9.5899 1.6025 -1.8409 37 1 12.0214 2.0967 -0.0731 38 1 10.3920 2.7747 -0.3281 39 1 12.2688 5.1277 -0.1706 40 1 9.5123 1.3310 3.0157 41 1 11.0489 0.4592 2.7527 42 1 8.1433 1.8372 1.2314 43 1 7.4419 0.1955 1.2958 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049102327.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:52 Heat of formation + Delta-G solvation = 7.491803 kcal Electronic energy + Delta-G solvation = -27314.305888 eV Core-core repulsion = 23363.714642 eV Total energy + Delta-G solvation = -3950.591246 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.28841 -41.63199 -39.76364 -38.90550 -36.71848 -35.25141 -34.26776 -33.73410 -31.92356 -31.19387 -28.73312 -27.85103 -27.13100 -26.53746 -25.94754 -24.32837 -23.37704 -21.85963 -20.91903 -20.55604 -19.09470 -18.94412 -18.62629 -18.17115 -17.47877 -17.20566 -16.79839 -16.69290 -16.55886 -16.00852 -15.95094 -15.55849 -14.88449 -14.76664 -14.49873 -14.41811 -13.89751 -13.68763 -13.60913 -13.37391 -13.17521 -13.14103 -12.77986 -12.71939 -12.54498 -12.38408 -12.06316 -11.98284 -11.90359 -11.67200 -11.57497 -11.54140 -11.39384 -10.76436 -10.71027 -10.69810 -9.88235 -8.89617 -7.86810 -5.21994 -0.10003 0.43321 1.43502 1.46778 1.52944 1.54388 1.82982 1.88777 2.47914 2.68072 2.95783 3.25210 3.30594 3.43882 3.53602 3.75990 3.79316 3.85421 3.95498 4.04696 4.18182 4.24489 4.39706 4.45406 4.50301 4.54548 4.59651 4.65869 4.67687 4.76093 4.77053 4.85626 4.96783 4.98796 5.02940 5.08665 5.32566 5.45428 5.60146 5.74128 6.10719 6.16893 6.19676 6.64310 6.92500 7.09398 7.78200 8.39522 9.23144 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017127 B = 0.003064 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.465409 B = 9134.821198 C = 9764.737491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.414 6.414 3 C 0.145 3.855 4 C -0.026 4.026 5 C -0.161 4.161 6 C -0.048 4.048 7 C 0.603 3.397 8 O -0.558 6.558 9 N -0.596 5.596 10 C 0.123 3.877 11 C -0.110 4.110 12 H 0.125 0.875 13 C 0.197 3.803 14 N -0.624 5.624 15 C -0.241 4.241 16 H 0.085 0.915 17 C -0.068 4.068 18 N -0.952 5.952 19 Si 0.977 3.023 20 H -0.274 1.274 21 H -0.297 1.297 22 H -0.278 1.278 23 C 0.140 3.860 24 C -0.095 4.095 25 H 0.136 0.864 26 C 0.123 3.877 27 N -0.333 5.333 28 O 0.138 5.862 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.117 0.883 34 H 0.199 0.801 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.010 0.990 38 H 0.006 0.994 39 H 0.245 0.755 40 H 0.043 0.957 41 H 0.037 0.963 42 H 0.046 0.954 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.253 -10.585 -0.126 24.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C 0.069 3.931 4 C -0.090 4.090 5 C -0.183 4.183 6 C -0.205 4.205 7 C 0.390 3.610 8 O -0.436 6.436 9 N -0.327 5.327 10 C 0.001 3.999 11 C -0.130 4.130 12 H 0.143 0.857 13 C 0.072 3.928 14 N -0.350 5.350 15 C -0.370 4.370 16 H 0.102 0.898 17 C -0.260 4.260 18 N -0.601 5.601 19 Si 0.806 3.194 20 H -0.200 1.200 21 H -0.223 1.223 22 H -0.205 1.205 23 C 0.015 3.985 24 C -0.114 4.114 25 H 0.154 0.846 26 C 0.000 4.000 27 N -0.031 5.031 28 O 0.057 5.943 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.120 0.880 33 H 0.135 0.865 34 H 0.216 0.784 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.028 0.972 38 H 0.025 0.975 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.065 0.935 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -21.180 -10.628 0.138 23.697 hybrid contribution 0.297 1.558 -0.569 1.685 sum -20.883 -9.070 -0.431 22.771 Atomic orbital electron populations 1.23012 0.77851 1.04246 1.01846 1.87923 1.22555 1.27064 1.95892 1.20953 0.80223 0.86201 1.05772 1.24567 0.96495 1.03473 0.84434 1.22699 0.88473 1.04353 1.02814 1.23347 0.96702 1.09836 0.90591 1.16769 0.81437 0.77041 0.85739 1.90746 1.86750 1.52849 1.13291 1.48211 1.05928 1.69678 1.08915 1.21867 0.80277 1.01955 0.95769 1.23055 0.97277 0.98671 0.93966 0.85746 1.20785 0.96852 0.90747 0.84414 1.44507 1.73686 1.12909 1.03915 1.19414 1.34210 0.91151 0.92184 0.89753 1.25655 1.02130 1.01618 0.96633 1.70190 1.51367 1.31534 1.06996 0.85165 0.78166 0.78955 0.77149 1.19959 1.22309 1.20452 1.21370 0.95436 0.87366 0.94337 1.23034 0.92273 1.01117 0.95001 0.84594 1.22157 0.98396 1.00805 0.78623 1.74334 0.97949 1.15207 1.15564 1.84781 1.11195 1.64274 1.34054 0.88687 0.92161 0.92056 0.88036 0.86494 0.78381 0.89166 0.93036 0.97161 0.97532 0.94554 0.93913 0.94566 0.93532 0.88793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 113.37 1.25 1.42 16 2 O -0.41 -5.95 10.69 -148.98 -1.59 -7.54 16 3 C 0.15 1.59 6.50 71.24 0.46 2.05 16 4 C -0.03 -0.52 7.10 25.01 0.18 -0.35 16 5 C -0.16 -3.85 10.92 22.60 0.25 -3.60 16 6 C -0.05 -1.51 7.01 42.96 0.30 -1.20 16 7 C 0.60 22.39 7.86 86.93 0.68 23.07 16 8 O -0.56 -22.92 17.26 -3.70 -0.06 -22.98 16 9 N -0.60 -21.80 3.31 -819.82 -2.72 -24.51 16 10 C 0.12 4.41 6.23 86.59 0.54 4.95 16 11 C -0.11 -3.95 4.02 -9.49 -0.04 -3.99 16 12 H 0.12 3.75 8.14 -2.38 -0.02 3.73 16 13 C 0.20 9.77 4.75 86.58 0.41 10.18 16 14 N -0.62 -31.87 3.37 -697.87 -2.35 -34.22 16 15 C -0.24 -13.55 10.25 84.03 0.86 -12.69 16 16 H 0.08 4.51 7.83 -2.91 -0.02 4.48 16 17 C -0.07 -3.91 5.48 84.86 0.47 -3.44 16 18 N -0.95 -58.49 10.25 21.65 0.22 -58.26 16 19 Si 0.98 46.56 29.55 68.60 2.03 48.59 16 20 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 21 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 C 0.14 5.48 6.37 86.65 0.55 6.03 16 24 C -0.09 -3.05 4.19 -9.25 -0.04 -3.09 16 25 H 0.14 3.29 8.14 -2.39 -0.02 3.27 16 26 C 0.12 4.25 5.22 86.72 0.45 4.71 16 27 N -0.33 -10.08 9.38 -49.51 -0.46 -10.54 16 28 O 0.14 3.42 11.18 71.86 0.80 4.22 16 29 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.20 3.89 8.06 -2.91 -0.02 3.87 16 35 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.05 2.11 7.44 -2.38 -0.02 2.09 16 37 H 0.01 0.57 7.45 -2.39 -0.02 0.55 16 38 H 0.01 0.38 6.51 -2.39 -0.02 0.36 16 39 H 0.25 14.78 8.31 -92.70 -0.77 14.01 16 40 H 0.04 1.64 7.94 -2.39 -0.02 1.62 16 41 H 0.04 1.34 8.14 -2.39 -0.02 1.33 16 42 H 0.05 1.95 7.72 -2.39 -0.02 1.93 16 43 H 0.09 2.93 6.52 -2.38 -0.02 2.91 16 Total: -1.00 -76.76 354.28 3.22 -73.55 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 1.02 Total: 7.65 kcal Atomic # 6 Polarization: 17.73 SS G_CDS: 6.33 Total: 24.05 kcal Atomic # 7 Polarization: -122.23 SS G_CDS: -5.31 Total: -127.53 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.85 Total: -26.31 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -76.76 3.22 -73.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049102327.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.040 kcal (2) G-P(sol) polarization free energy of solvation -76.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds