Wall clock time and date at job start Tue Mar 31 2020 13:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99723 * 2 1 4 4 C 1.50702 * 109.46877 * 179.97438 * 3 2 1 5 5 N 1.30006 * 127.33826 * 269.97322 * 4 3 2 6 6 O 1.20656 * 112.30783 * 180.02562 * 5 4 3 7 7 C 1.33500 * 113.15563 * 359.97438 * 6 5 4 8 8 C 1.37366 * 106.33483 * 0.02562 * 7 6 5 9 9 C 1.47396 * 128.55829 * 180.02562 * 8 7 6 10 10 O 1.21610 * 119.99782 * 186.19476 * 9 8 7 11 11 N 1.34777 * 120.00710 * 6.19402 * 9 8 7 12 12 C 1.46663 * 125.34286 * 185.40154 * 11 9 8 13 13 C 1.53724 * 107.94243 * 180.54487 * 12 11 9 14 14 H 1.09002 * 112.56169 * 139.72368 * 13 12 11 15 15 C 1.53689 * 109.34126 * 266.25260 * 13 12 11 16 16 N 1.46642 * 108.00904 * 127.55836 * 15 13 12 17 17 C 1.36941 * 125.32852 * 180.81596 * 16 15 13 18 18 H 1.07997 * 119.99691 * 180.02562 * 17 16 15 19 19 C 1.38818 * 119.99941 * 0.02562 * 17 16 15 20 20 N 1.31620 * 119.99781 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99798 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46799 * 90.00242 * 21 19 17 23 23 H 1.48502 * 109.46914 * 210.00194 * 21 19 17 24 24 H 1.48496 * 109.46970 * 330.00203 * 21 19 17 25 25 C 1.46742 * 109.34140 * 0.83628 * 16 15 13 26 26 C 1.53932 * 106.72092 * 341.66104 * 25 16 15 27 27 H 1.08994 * 113.01365 * 150.83494 * 26 25 16 28 28 C 1.46778 * 125.33018 * 5.09661 * 11 9 8 29 29 H 1.09000 * 109.46782 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47015 * 299.99816 * 1 2 3 31 31 H 1.08998 * 109.47015 * 60.00078 * 1 2 3 32 32 H 1.08994 * 109.47223 * 60.00123 * 3 2 1 33 33 H 1.09002 * 109.47153 * 299.99655 * 3 2 1 34 34 H 1.07990 * 126.83340 * 180.02562 * 7 6 5 35 35 H 1.09001 * 109.77207 * 300.16564 * 12 11 9 36 36 H 1.09003 * 109.77161 * 60.92671 * 12 11 9 37 37 H 1.09009 * 109.76532 * 247.19668 * 15 13 12 38 38 H 1.08994 * 109.76486 * 7.91490 * 15 13 12 39 39 H 0.97007 * 119.99414 * 180.02562 * 20 19 17 40 40 H 1.09000 * 110.00986 * 222.34148 * 25 16 15 41 41 H 1.09006 * 110.00974 * 100.97492 * 25 16 15 42 42 H 1.08999 * 110.02848 * 280.77257 * 28 11 9 43 43 H 1.08997 * 110.03150 * 42.19423 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2981 1.1249 1.0346 6 8 5.4599 1.0332 0.7222 7 6 5.6485 1.0173 -0.5993 8 6 4.4023 1.1156 -1.1686 9 6 4.0448 1.1424 -2.5983 10 8 2.8940 1.3473 -2.9336 11 7 4.9933 0.9397 -3.5342 12 6 4.7934 1.0512 -4.9828 13 6 6.1285 0.7253 -5.6716 14 1 5.9992 0.1222 -6.5703 15 6 6.9007 2.0293 -5.9278 16 7 8.2478 1.8757 -5.3692 17 6 9.2267 2.8331 -5.3879 18 1 10.1920 2.6269 -4.9498 19 6 8.9780 4.0687 -5.9697 20 7 7.8013 4.3201 -6.5031 21 14 10.3131 5.3750 -5.9945 22 1 11.1216 5.2330 -7.2319 23 1 9.6884 6.7219 -5.9631 24 1 11.1905 5.2085 -4.8081 25 6 8.3828 0.5352 -4.7876 26 6 6.9557 -0.0009 -4.5745 27 1 6.8948 -1.0873 -4.6381 28 6 6.3900 0.5790 -3.2629 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 6.5929 0.9422 -1.1177 35 1 4.0298 0.3434 -5.3052 36 1 4.4862 2.0660 -5.2356 37 1 6.9653 2.2148 -7.0001 38 1 6.3920 2.8607 -5.4401 39 1 7.6277 5.1834 -6.9100 40 1 8.9057 0.5938 -3.8330 41 1 8.9273 -0.1153 -5.4722 42 1 6.9539 1.4643 -2.9691 43 1 6.4352 -0.1718 -2.4740 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049168085.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:18 Heat of formation + Delta-G solvation = 29.307650 kcal Electronic energy + Delta-G solvation = -27802.981786 eV Core-core repulsion = 23853.336546 eV Total energy + Delta-G solvation = -3949.645240 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.06626 -40.26009 -38.35055 -37.92475 -35.08353 -34.11207 -32.71960 -32.04771 -30.25903 -29.56873 -28.47979 -26.23252 -25.80437 -25.67500 -24.48706 -22.63615 -21.47270 -20.17406 -20.05379 -19.38160 -17.92347 -17.56901 -17.14589 -16.76477 -16.44561 -16.16154 -15.92243 -15.54929 -15.08030 -14.80713 -14.40227 -13.90781 -13.73158 -13.31172 -13.03754 -12.84574 -12.67555 -12.55864 -12.17234 -12.02930 -11.75177 -11.61729 -11.58713 -11.50001 -10.96643 -10.86793 -10.53543 -10.31507 -10.19724 -10.16205 -10.07701 -9.98300 -9.81753 -9.79518 -9.70678 -8.68180 -8.47381 -6.92608 -5.80189 -3.14571 0.98987 1.50078 2.69493 3.14709 3.21190 3.35030 3.40321 3.42434 3.54960 3.99602 4.26998 4.42384 4.51534 4.69063 4.75095 4.94514 5.01281 5.11397 5.12856 5.19634 5.24766 5.42409 5.42947 5.46594 5.47192 5.54720 5.55370 5.66610 5.70382 5.86970 6.05375 6.16579 6.24378 6.42317 6.47386 6.50925 6.70212 6.86108 7.46812 7.48680 7.58633 7.73631 8.00380 8.17765 8.19039 9.13610 9.74179 10.36843 11.31047 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017858 B = 0.003381 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.588944 B = 8278.553687 C = 8667.267542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.384 6.384 3 C 0.142 3.858 4 C 0.063 3.937 5 N -0.341 5.341 6 O 0.104 5.896 7 C -0.012 4.012 8 C -0.230 4.230 9 C 0.608 3.392 10 O -0.534 6.534 11 N -0.599 5.599 12 C 0.123 3.877 13 C -0.123 4.123 14 H 0.093 0.907 15 C 0.183 3.817 16 N -0.603 5.603 17 C -0.233 4.233 18 H 0.079 0.921 19 C -0.005 4.005 20 N -0.920 5.920 21 Si 0.912 3.088 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.145 3.855 26 C -0.110 4.110 27 H 0.093 0.907 28 C 0.098 3.902 29 H 0.088 0.912 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.235 0.765 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.052 0.948 39 H 0.253 0.747 40 H 0.039 0.961 41 H 0.022 0.978 42 H 0.085 0.915 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.352 -9.364 10.113 16.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.302 6.302 3 C 0.065 3.935 4 C -0.100 4.100 5 N -0.047 5.047 6 O 0.041 5.959 7 C -0.093 4.093 8 C -0.238 4.238 9 C 0.396 3.604 10 O -0.412 6.412 11 N -0.331 5.331 12 C 0.001 3.999 13 C -0.142 4.142 14 H 0.111 0.889 15 C 0.059 3.941 16 N -0.329 5.329 17 C -0.361 4.361 18 H 0.097 0.903 19 C -0.202 4.202 20 N -0.567 5.567 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.018 3.982 26 C -0.130 4.130 27 H 0.111 0.889 28 C -0.025 4.025 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.251 0.749 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.040 0.960 42 H 0.103 0.897 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.102 -9.155 11.225 17.107 hybrid contribution 0.597 0.975 -0.982 1.507 sum -8.505 -8.180 10.242 15.625 Atomic orbital electron populations 1.22761 0.80161 1.03009 1.00302 1.87901 1.20241 1.26480 1.95542 1.20578 0.84209 0.86016 1.02668 1.24292 0.97313 1.01582 0.86769 1.73637 0.89633 1.17751 1.23641 1.84589 1.21472 1.66364 1.23520 1.27128 1.01001 0.97771 0.83426 1.22260 0.92691 1.13316 0.95526 1.16324 0.84232 0.77365 0.82491 1.90764 1.18563 1.50283 1.81615 1.48009 1.10205 1.67846 1.07069 1.21874 0.97717 1.02175 0.78088 1.23179 0.93635 1.00137 0.97296 0.88858 1.21139 0.84177 0.90130 0.98704 1.44217 1.11325 1.10095 1.67281 1.19018 0.92476 0.91813 1.32784 0.90315 1.24808 0.97111 0.97825 1.00442 1.69952 1.20778 1.22901 1.43040 0.86126 0.80666 0.81205 0.77781 1.21561 1.21686 1.20649 1.21180 0.92208 0.88138 0.96684 1.22945 0.97512 0.99125 0.93377 0.88872 1.22475 0.81677 0.99798 0.98531 0.89375 0.93979 0.93399 0.91391 0.89122 0.74882 0.91883 0.90534 0.93632 0.92989 0.93643 0.94322 0.96040 0.89727 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -5.25 10.69 -35.23 -0.38 -5.63 16 3 C 0.14 1.87 6.24 36.01 0.22 2.10 16 4 C 0.06 0.93 7.21 -79.77 -0.58 0.35 16 5 N -0.34 -4.88 12.01 34.78 0.42 -4.46 16 6 O 0.10 1.31 11.06 18.63 0.21 1.51 16 7 C -0.01 -0.14 10.69 30.41 0.33 0.19 16 8 C -0.23 -3.38 6.37 -102.89 -0.66 -4.04 16 9 C 0.61 10.17 7.82 -12.53 -0.10 10.07 16 10 O -0.53 -10.22 15.98 5.27 0.08 -10.14 16 11 N -0.60 -9.42 3.31 -173.44 -0.57 -10.00 16 12 C 0.12 2.00 6.24 -3.58 -0.02 1.97 16 13 C -0.12 -2.02 4.02 -88.61 -0.36 -2.38 16 14 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 15 C 0.18 4.04 4.75 -3.61 -0.02 4.02 16 16 N -0.60 -13.86 3.37 -171.93 -0.58 -14.44 16 17 C -0.23 -6.03 10.25 -15.06 -0.15 -6.18 16 18 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 19 C -0.01 -0.14 5.48 -17.43 -0.10 -0.23 16 20 N -0.92 -25.80 10.25 55.49 0.57 -25.23 16 21 Si 0.91 21.25 29.55 -169.99 -5.02 16.23 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 C 0.14 2.55 6.37 -3.42 -0.02 2.53 16 26 C -0.11 -1.59 4.19 -88.24 -0.37 -1.96 16 27 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 28 C 0.10 1.34 4.36 -3.28 -0.01 1.32 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 1.23 7.03 -51.93 -0.37 0.87 16 34 H 0.24 2.08 5.07 -52.49 -0.27 1.81 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 1.37 7.44 -51.93 -0.39 0.99 16 37 H 0.05 1.14 7.46 -51.92 -0.39 0.75 16 38 H 0.05 1.30 6.50 -51.93 -0.34 0.97 16 39 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.04 0.64 7.95 -51.93 -0.41 0.23 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 1.28 7.15 -51.93 -0.37 0.91 16 43 H 0.07 0.73 6.33 -51.93 -0.33 0.40 16 LS Contribution 348.74 15.07 5.26 5.26 Total: -1.00 -32.22 348.74 -6.52 -38.75 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -5.78 Total: -1.04 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: -0.72 Total: 9.20 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.17 Total: -54.13 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.09 Total: -14.26 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.22 -6.52 -38.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049168085.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.054 kcal (2) G-P(sol) polarization free energy of solvation -32.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds