Wall clock time and date at job start Tue Mar 31 2020 13:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99723 * 2 1 4 4 C 1.50702 * 109.46877 * 179.97438 * 3 2 1 5 5 N 1.30006 * 127.33826 * 269.97322 * 4 3 2 6 6 O 1.20656 * 112.30783 * 180.02562 * 5 4 3 7 7 C 1.33500 * 113.15563 * 359.97438 * 6 5 4 8 8 C 1.37366 * 106.33483 * 0.02562 * 7 6 5 9 9 C 1.47396 * 128.55829 * 180.02562 * 8 7 6 10 10 O 1.21610 * 119.99782 * 186.19476 * 9 8 7 11 11 N 1.34777 * 120.00710 * 6.19402 * 9 8 7 12 12 C 1.46663 * 125.34286 * 185.40154 * 11 9 8 13 13 C 1.53724 * 107.94243 * 180.54487 * 12 11 9 14 14 H 1.09002 * 112.56169 * 139.72368 * 13 12 11 15 15 C 1.53689 * 109.34126 * 266.25260 * 13 12 11 16 16 N 1.46642 * 108.00904 * 127.55836 * 15 13 12 17 17 C 1.36941 * 125.32852 * 180.81596 * 16 15 13 18 18 H 1.07997 * 119.99691 * 180.02562 * 17 16 15 19 19 C 1.38818 * 119.99941 * 0.02562 * 17 16 15 20 20 N 1.31620 * 119.99781 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99798 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46799 * 90.00242 * 21 19 17 23 23 H 1.48502 * 109.46914 * 210.00194 * 21 19 17 24 24 H 1.48496 * 109.46970 * 330.00203 * 21 19 17 25 25 C 1.46742 * 109.34140 * 0.83628 * 16 15 13 26 26 C 1.53932 * 106.72092 * 341.66104 * 25 16 15 27 27 H 1.08994 * 113.01365 * 150.83494 * 26 25 16 28 28 C 1.46778 * 125.33018 * 5.09661 * 11 9 8 29 29 H 1.09000 * 109.46782 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47015 * 299.99816 * 1 2 3 31 31 H 1.08998 * 109.47015 * 60.00078 * 1 2 3 32 32 H 1.08994 * 109.47223 * 60.00123 * 3 2 1 33 33 H 1.09002 * 109.47153 * 299.99655 * 3 2 1 34 34 H 1.07990 * 126.83340 * 180.02562 * 7 6 5 35 35 H 1.09001 * 109.77207 * 300.16564 * 12 11 9 36 36 H 1.09003 * 109.77161 * 60.92671 * 12 11 9 37 37 H 1.09009 * 109.76532 * 247.19668 * 15 13 12 38 38 H 1.08994 * 109.76486 * 7.91490 * 15 13 12 39 39 H 0.97007 * 119.99414 * 180.02562 * 20 19 17 40 40 H 1.09000 * 110.00986 * 222.34148 * 25 16 15 41 41 H 1.09006 * 110.00974 * 100.97492 * 25 16 15 42 42 H 1.08999 * 110.02848 * 280.77257 * 28 11 9 43 43 H 1.08997 * 110.03150 * 42.19423 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2981 1.1249 1.0346 6 8 5.4599 1.0332 0.7222 7 6 5.6485 1.0173 -0.5993 8 6 4.4023 1.1156 -1.1686 9 6 4.0448 1.1424 -2.5983 10 8 2.8940 1.3473 -2.9336 11 7 4.9933 0.9397 -3.5342 12 6 4.7934 1.0512 -4.9828 13 6 6.1285 0.7253 -5.6716 14 1 5.9992 0.1222 -6.5703 15 6 6.9007 2.0293 -5.9278 16 7 8.2478 1.8757 -5.3692 17 6 9.2267 2.8331 -5.3879 18 1 10.1920 2.6269 -4.9498 19 6 8.9780 4.0687 -5.9697 20 7 7.8013 4.3201 -6.5031 21 14 10.3131 5.3750 -5.9945 22 1 11.1216 5.2330 -7.2319 23 1 9.6884 6.7219 -5.9631 24 1 11.1905 5.2085 -4.8081 25 6 8.3828 0.5352 -4.7876 26 6 6.9557 -0.0009 -4.5745 27 1 6.8948 -1.0873 -4.6381 28 6 6.3900 0.5790 -3.2629 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 6.5929 0.9422 -1.1177 35 1 4.0298 0.3434 -5.3052 36 1 4.4862 2.0660 -5.2356 37 1 6.9653 2.2148 -7.0001 38 1 6.3920 2.8607 -5.4401 39 1 7.6277 5.1834 -6.9100 40 1 8.9057 0.5938 -3.8330 41 1 8.9273 -0.1153 -5.4722 42 1 6.9539 1.4643 -2.9691 43 1 6.4352 -0.1718 -2.4740 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049168085.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:17 Heat of formation + Delta-G solvation = 7.096166 kcal Electronic energy + Delta-G solvation = -27803.944948 eV Core-core repulsion = 23853.336546 eV Total energy + Delta-G solvation = -3950.608402 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.12544 -41.56173 -39.65280 -38.94042 -36.62631 -35.17475 -34.24262 -33.39988 -31.64023 -31.12967 -29.42495 -27.67882 -27.11210 -26.75209 -25.91696 -23.99070 -22.54049 -21.74861 -21.24076 -20.72041 -18.99168 -18.92736 -18.50952 -18.11115 -17.47663 -17.36446 -16.98446 -16.68082 -16.54558 -16.05486 -15.89679 -15.48222 -14.94655 -14.69076 -14.39594 -14.28194 -13.66186 -13.56456 -13.54834 -13.40898 -13.17584 -13.04719 -12.73453 -12.65155 -12.59556 -12.56663 -11.96793 -11.87097 -11.81887 -11.49068 -11.36523 -11.36095 -11.31022 -10.88974 -10.78070 -10.65447 -9.74218 -8.82364 -7.81504 -5.15480 -0.05183 0.43721 1.49086 1.49274 1.57785 1.58888 1.97045 2.11489 2.52542 2.57186 2.97975 3.25183 3.35755 3.37394 3.53027 3.69129 3.74464 3.87189 3.98499 4.06610 4.21341 4.22836 4.32182 4.44615 4.47395 4.50593 4.52632 4.55216 4.63521 4.72115 4.79193 4.87149 4.92045 5.09422 5.12478 5.20792 5.42185 5.54293 5.67748 5.82699 5.99300 6.25642 6.34741 6.90515 7.01417 7.15622 7.85672 8.46013 9.28306 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017858 B = 0.003381 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.588944 B = 8278.553687 C = 8667.267542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.408 6.408 3 C 0.143 3.857 4 C 0.050 3.950 5 N -0.352 5.352 6 O 0.112 5.888 7 C 0.021 3.979 8 C -0.259 4.259 9 C 0.605 3.395 10 O -0.569 6.569 11 N -0.600 5.600 12 C 0.128 3.872 13 C -0.112 4.112 14 H 0.115 0.885 15 C 0.196 3.804 16 N -0.623 5.623 17 C -0.232 4.232 18 H 0.089 0.911 19 C -0.067 4.067 20 N -0.951 5.951 21 Si 0.971 3.029 22 H -0.290 1.290 23 H -0.303 1.303 24 H -0.265 1.265 25 C 0.137 3.863 26 C -0.091 4.091 27 H 0.137 0.863 28 C 0.095 3.905 29 H 0.103 0.897 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.266 0.734 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.002 0.998 38 H 0.010 0.990 39 H 0.242 0.758 40 H 0.058 0.942 41 H 0.030 0.970 42 H 0.071 0.929 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.211 -11.639 11.780 18.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.327 6.327 3 C 0.066 3.934 4 C -0.113 4.113 5 N -0.057 5.057 6 O 0.049 5.951 7 C -0.061 4.061 8 C -0.267 4.267 9 C 0.395 3.605 10 O -0.450 6.450 11 N -0.331 5.331 12 C 0.005 3.995 13 C -0.131 4.131 14 H 0.133 0.867 15 C 0.071 3.929 16 N -0.349 5.349 17 C -0.361 4.361 18 H 0.106 0.894 19 C -0.260 4.260 20 N -0.601 5.601 21 Si 0.800 3.200 22 H -0.217 1.217 23 H -0.230 1.230 24 H -0.190 1.190 25 C 0.012 3.988 26 C -0.110 4.110 27 H 0.155 0.845 28 C -0.027 4.027 29 H 0.121 0.879 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.282 0.718 35 H 0.098 0.902 36 H 0.065 0.935 37 H 0.020 0.980 38 H 0.029 0.971 39 H 0.052 0.948 40 H 0.076 0.924 41 H 0.048 0.952 42 H 0.089 0.911 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.929 -11.477 12.925 19.017 hybrid contribution 0.275 1.654 -1.498 2.248 sum -7.654 -9.824 11.427 16.901 Atomic orbital electron populations 1.22986 0.78266 1.04351 1.01209 1.87853 1.22404 1.26727 1.95705 1.20589 0.83795 0.86111 1.02952 1.24589 0.98130 1.01617 0.86921 1.73634 0.90062 1.18321 1.23704 1.84584 1.20859 1.65775 1.23834 1.27570 1.00963 0.94714 0.82812 1.22133 0.94079 1.15976 0.94497 1.16599 0.83881 0.76689 0.83363 1.90739 1.20026 1.51894 1.82292 1.48048 1.10956 1.67500 1.06600 1.21734 0.97945 1.00962 0.78829 1.23004 0.93217 0.97702 0.99224 0.86690 1.20774 0.84597 0.92052 0.95481 1.44503 1.10973 1.11844 1.67575 1.19442 0.93375 0.92288 1.30996 0.89350 1.25576 0.98929 1.00121 1.01374 1.70193 1.22612 1.22601 1.44687 0.85181 0.78480 0.78261 0.78058 1.21679 1.22966 1.18957 1.21434 0.94622 0.85477 0.97226 1.22999 0.94555 1.01149 0.92346 0.84512 1.22625 0.80105 1.00417 0.99558 0.87863 0.92084 0.93469 0.89529 0.90336 0.71844 0.90203 0.93542 0.97951 0.97140 0.94820 0.92371 0.95191 0.91133 0.86957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.41 -10.91 10.69 -148.98 -1.59 -12.50 16 3 C 0.14 3.71 6.24 71.24 0.44 4.15 16 4 C 0.05 1.42 7.21 45.16 0.33 1.75 16 5 N -0.35 -9.47 12.01 -44.78 -0.54 -10.01 16 6 O 0.11 2.54 11.06 76.92 0.85 3.39 16 7 C 0.02 0.43 10.69 67.61 0.72 1.15 16 8 C -0.26 -7.21 6.37 -18.74 -0.12 -7.33 16 9 C 0.61 19.82 7.82 86.65 0.68 20.49 16 10 O -0.57 -22.08 15.98 -4.06 -0.06 -22.15 16 11 N -0.60 -17.93 3.31 -820.90 -2.72 -20.65 16 12 C 0.13 4.07 6.24 86.59 0.54 4.61 16 13 C -0.11 -3.52 4.02 -9.49 -0.04 -3.56 16 14 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 15 C 0.20 8.87 4.75 86.58 0.41 9.28 16 16 N -0.62 -28.29 3.37 -697.85 -2.35 -30.64 16 17 C -0.23 -11.93 10.25 84.03 0.86 -11.07 16 18 H 0.09 4.27 7.83 -2.91 -0.02 4.25 16 19 C -0.07 -3.66 5.48 84.86 0.47 -3.19 16 20 N -0.95 -55.78 10.25 21.65 0.22 -55.55 16 21 Si 0.97 44.27 29.55 68.60 2.03 46.30 16 22 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 23 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 24 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 25 C 0.14 4.40 6.37 86.65 0.55 4.95 16 26 C -0.09 -2.27 4.19 -9.25 -0.04 -2.31 16 27 H 0.14 2.40 8.14 -2.39 -0.02 2.38 16 28 C 0.09 2.25 4.36 86.72 0.38 2.63 16 29 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.08 2.19 7.03 -2.39 -0.02 2.18 16 34 H 0.27 3.51 5.07 -2.92 -0.01 3.50 16 35 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.05 1.75 7.44 -2.39 -0.02 1.74 16 37 H 0.00 0.12 7.46 -2.38 -0.02 0.10 16 38 H 0.01 0.55 6.50 -2.39 -0.02 0.54 16 39 H 0.24 14.10 8.31 -92.70 -0.77 13.33 16 40 H 0.06 1.67 7.95 -2.39 -0.02 1.65 16 41 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 42 H 0.07 1.92 7.15 -2.39 -0.02 1.91 16 43 H 0.11 1.75 6.33 -2.39 -0.02 1.73 16 Total: -1.00 -73.75 348.74 3.30 -70.45 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 1.04 Total: 8.07 kcal Atomic # 6 Polarization: 16.86 SS G_CDS: 6.43 Total: 23.29 kcal Atomic # 7 Polarization: -111.46 SS G_CDS: -5.39 Total: -116.85 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.81 Total: -31.26 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -73.75 3.30 -70.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049168085.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.545 kcal (2) G-P(sol) polarization free energy of solvation -73.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds