Wall clock time and date at job start Tue Mar 31 2020 13:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35729 * 117.00078 * 2 1 4 4 C 1.41853 * 126.78497 * 179.97438 * 3 2 1 5 5 C 1.36667 * 103.81328 * 180.02562 * 4 3 2 6 6 C 1.47536 * 126.88040 * 179.97438 * 5 4 3 7 7 O 1.21576 * 119.99966 * 7.07073 * 6 5 4 8 8 N 1.34777 * 120.00120 * 187.06523 * 6 5 4 9 9 C 1.46800 * 119.57885 * 187.06386 * 8 6 5 10 10 C 1.53467 * 107.59404 * 232.05356 * 9 8 6 11 11 C 1.52733 * 108.44211 * 301.92573 * 10 9 8 12 12 C 1.53012 * 110.80842 * 63.76253 * 11 10 9 13 13 H 1.09001 * 111.38429 * 68.76928 * 12 11 10 14 14 C 1.45129 * 119.57441 * 6.79181 * 8 6 5 15 15 H 1.08994 * 109.96638 * 11.93057 * 14 8 6 16 16 C 1.54419 * 111.60394 * 248.64523 * 14 8 6 17 17 C 1.54570 * 102.44468 * 203.41928 * 16 14 8 18 18 N 1.48212 * 107.11583 * 191.93296 * 12 11 10 19 19 C 1.36940 * 125.76572 * 270.86026 * 18 12 11 20 20 H 1.08002 * 119.99705 * 4.30994 * 19 18 12 21 21 C 1.38812 * 119.99823 * 184.30393 * 19 18 12 22 22 N 1.31614 * 119.99861 * 351.79046 * 21 19 18 23 23 Si 1.86802 * 119.99924 * 171.79048 * 21 19 18 24 24 H 1.48495 * 109.47240 * 94.97725 * 23 21 19 25 25 H 1.48500 * 109.46996 * 214.97818 * 23 21 19 26 26 H 1.48496 * 109.46986 * 334.97634 * 23 21 19 27 27 O 1.34661 * 106.23627 * 0.02562 * 5 4 3 28 28 N 1.20875 * 111.63535 * 0.02562 * 27 5 4 29 29 H 1.08995 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47170 * 300.00188 * 1 2 3 31 31 H 1.09000 * 109.46784 * 60.00038 * 1 2 3 32 32 H 1.08002 * 128.09494 * 359.97438 * 4 3 2 33 33 H 1.08998 * 109.83384 * 351.58213 * 9 8 6 34 34 H 1.09005 * 109.83243 * 112.47140 * 9 8 6 35 35 H 1.09005 * 109.63654 * 61.60828 * 10 9 8 36 36 H 1.08992 * 109.63883 * 182.02043 * 10 9 8 37 37 H 1.08998 * 109.20948 * 184.10768 * 11 10 9 38 38 H 1.09004 * 109.20530 * 303.46432 * 11 10 9 39 39 H 1.08998 * 110.81491 * 321.65889 * 16 14 8 40 40 H 1.09002 * 110.80987 * 84.98905 * 16 14 8 41 41 H 1.08998 * 109.88716 * 141.08958 * 17 16 14 42 42 H 1.08997 * 109.88417 * 262.26772 * 17 16 14 43 43 H 0.97002 * 120.00191 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4431 1.4504 0.0005 5 6 3.5392 2.8137 0.0009 6 6 4.7786 3.6140 0.0020 7 8 5.8561 3.0660 -0.1269 8 7 4.7163 4.9527 0.1458 9 6 5.9353 5.7557 -0.0097 10 6 6.0656 6.6465 1.2332 11 6 4.8090 7.5074 1.3445 12 6 3.5715 6.6363 1.5702 13 1 3.5867 6.1720 2.5563 14 6 3.4437 5.5823 0.4464 15 1 2.7107 4.8255 0.7256 16 6 2.9323 6.4264 -0.7412 17 6 1.9858 7.4344 -0.0504 18 7 2.3858 7.5040 1.3753 19 6 1.7689 8.2463 2.3467 20 1 2.1847 8.2846 3.3427 21 6 0.6092 8.9497 2.0511 22 7 0.1915 9.0363 0.8060 23 14 -0.3584 9.7731 3.4204 24 1 0.0537 11.1954 3.5316 25 1 -1.8096 9.7008 3.1137 26 1 -0.0886 9.0778 4.7045 27 8 2.2759 3.2801 0.0011 28 7 1.4687 2.3804 0.0015 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 4.2442 0.7260 0.0014 33 1 6.8026 5.1001 -0.0875 34 1 5.8586 6.3751 -0.9034 35 1 6.1626 6.0231 2.1221 36 1 6.9436 7.2849 1.1359 37 1 4.9197 8.1970 2.1813 38 1 4.6824 8.0777 0.4242 39 1 3.7567 6.9433 -1.2324 40 1 2.3884 5.8047 -1.4524 41 1 2.0878 8.4159 -0.5132 42 1 0.9549 7.0897 -0.1304 43 1 -0.6187 9.5281 0.5993 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049434081.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:32 Heat of formation + Delta-G solvation = 45.174010 kcal Electronic energy + Delta-G solvation = -28506.330507 eV Core-core repulsion = 24557.373284 eV Total energy + Delta-G solvation = -3948.957223 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.05175 -40.40751 -38.99591 -38.24389 -35.08030 -33.35733 -33.17704 -32.12013 -31.55135 -29.08270 -28.28938 -27.82068 -25.42496 -24.46258 -23.56470 -23.01530 -21.97065 -20.87351 -20.09051 -19.38389 -18.08808 -17.68745 -17.15944 -16.75247 -16.34370 -15.83780 -15.67968 -15.08324 -14.94241 -14.77284 -14.46893 -14.05664 -13.73104 -13.66178 -13.42395 -12.93682 -12.59801 -12.43168 -12.11561 -12.03548 -11.93307 -11.49076 -11.41853 -11.02875 -10.99298 -10.87951 -10.68231 -10.55741 -10.38593 -10.11489 -9.97497 -9.94879 -9.69802 -9.66990 -9.38262 -8.63096 -8.46218 -6.90542 -5.76174 -3.08150 0.70076 2.02172 2.49821 2.51873 2.90515 3.24036 3.38543 3.44848 3.46266 3.99041 4.39878 4.51742 4.69223 4.89294 4.97207 5.04751 5.09893 5.17147 5.20562 5.27912 5.30004 5.47319 5.50156 5.51687 5.55434 5.73472 5.78717 6.02589 6.08837 6.15134 6.22528 6.28189 6.43843 6.44315 6.65647 6.75645 6.78083 6.98898 7.31189 7.50068 7.56364 7.78092 7.84226 8.08322 8.17688 9.14791 9.76010 10.41774 11.36067 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011700 B = 0.004746 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.677061 B = 5898.826433 C = 7725.754114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.283 6.283 3 C 0.200 3.800 4 C -0.157 4.157 5 C -0.055 4.055 6 C 0.600 3.400 7 O -0.522 6.522 8 N -0.575 5.575 9 C 0.112 3.888 10 C -0.132 4.132 11 C -0.132 4.132 12 C 0.159 3.841 13 H 0.062 0.938 14 C 0.111 3.889 15 H 0.108 0.892 16 C -0.151 4.151 17 C 0.179 3.821 18 N -0.597 5.597 19 C -0.228 4.228 20 H 0.078 0.922 21 C -0.003 4.003 22 N -0.918 5.918 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.290 1.290 26 H -0.281 1.281 27 O 0.130 5.870 28 N -0.387 5.387 29 H 0.105 0.895 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.188 0.812 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.044 0.956 42 H 0.054 0.946 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.805 -13.000 -3.302 15.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.190 6.190 3 C 0.002 3.998 4 C -0.180 4.180 5 C -0.121 4.121 6 C 0.385 3.615 7 O -0.400 6.400 8 N -0.305 5.305 9 C -0.009 4.009 10 C -0.171 4.171 11 C -0.172 4.172 12 C 0.050 3.950 13 H 0.080 0.920 14 C 0.007 3.993 15 H 0.125 0.875 16 C -0.190 4.190 17 C 0.055 3.945 18 N -0.322 5.322 19 C -0.356 4.356 20 H 0.096 0.904 21 C -0.200 4.200 22 N -0.565 5.565 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.216 1.216 26 H -0.206 1.206 27 O 0.064 5.936 28 N -0.111 5.111 29 H 0.124 0.876 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.206 0.794 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.980 -13.008 -3.348 14.703 hybrid contribution -0.349 0.166 0.661 0.766 sum 5.631 -12.842 -2.687 14.277 Atomic orbital electron populations 1.23099 0.76564 1.04085 1.02731 1.86189 1.22778 1.20476 1.89544 1.21871 0.90540 0.85884 1.01471 1.22110 0.94408 0.94761 1.06756 1.24048 0.87364 0.93686 1.06991 1.16661 0.85067 0.81895 0.77835 1.90826 1.26850 1.70941 1.51348 1.47640 1.10851 1.04991 1.67005 1.21835 0.86383 0.93911 0.98782 1.21929 0.99236 0.98514 0.97449 1.22162 0.93803 0.98604 1.02644 1.21384 0.88543 0.89865 0.95174 0.91985 1.22496 0.82771 0.96408 0.97637 0.87482 1.23123 1.00282 0.98773 0.96801 1.21382 0.95142 0.95129 0.82857 1.44949 1.30696 1.50830 1.05760 1.19007 1.04293 1.21761 0.90571 0.90390 1.24778 0.98183 1.00585 0.96449 1.69952 1.24720 1.45732 1.16060 0.86175 0.79716 0.79074 0.81261 1.21711 1.21648 1.20643 1.85252 1.11789 1.28710 1.67807 1.74055 1.16629 0.96721 1.23655 0.87622 0.91969 0.92060 0.79425 0.88805 0.90785 0.91698 0.90998 0.91932 0.91668 0.91831 0.91678 0.93745 0.92780 0.93694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.73 101.05 1.08 1.36 16 2 O -0.28 -3.48 10.57 -18.90 -0.20 -3.68 16 3 C 0.20 2.78 8.00 -16.72 -0.13 2.65 16 4 C -0.16 -2.07 10.98 -38.77 -0.43 -2.49 16 5 C -0.05 -0.80 6.84 -36.36 -0.25 -1.05 16 6 C 0.60 9.11 7.64 -12.47 -0.10 9.01 16 7 O -0.52 -8.58 16.25 5.30 0.09 -8.49 16 8 N -0.57 -8.54 2.73 -165.99 -0.45 -8.99 16 9 C 0.11 1.45 6.17 -3.64 -0.02 1.43 16 10 C -0.13 -1.72 6.11 -26.63 -0.16 -1.88 16 11 C -0.13 -2.19 5.10 -26.86 -0.14 -2.32 16 12 C 0.16 3.03 3.61 -66.14 -0.24 2.79 16 13 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 14 C 0.11 1.89 2.69 -67.08 -0.18 1.71 16 15 H 0.11 1.91 4.38 -52.46 -0.23 1.68 16 16 C -0.15 -2.66 6.08 -25.16 -0.15 -2.81 16 17 C 0.18 4.09 5.23 -2.26 -0.01 4.08 16 18 N -0.60 -14.15 2.94 -161.06 -0.47 -14.63 16 19 C -0.23 -6.04 10.28 -15.06 -0.15 -6.19 16 20 H 0.08 2.01 7.84 -52.49 -0.41 1.59 16 21 C 0.00 -0.09 5.47 -17.43 -0.10 -0.18 16 22 N -0.92 -26.04 10.42 55.49 0.58 -25.46 16 23 Si 0.91 21.55 29.56 -169.99 -5.03 16.52 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 O 0.13 2.06 7.91 15.50 0.12 2.19 16 28 N -0.39 -6.06 11.50 30.47 0.35 -5.71 16 29 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.19 2.02 8.06 -52.49 -0.42 1.60 16 33 H 0.09 1.17 6.93 -51.93 -0.36 0.81 16 34 H 0.07 0.90 7.51 -51.93 -0.39 0.51 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 1.15 7.11 -51.93 -0.37 0.78 16 39 H 0.06 1.04 6.78 -51.93 -0.35 0.69 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.04 1.12 7.66 -51.93 -0.40 0.72 16 42 H 0.05 1.39 7.31 -51.93 -0.38 1.01 16 43 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 345.14 15.07 5.20 5.20 Total: -1.00 -30.05 345.14 -6.62 -36.67 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.83 Total: 0.30 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -0.98 Total: 6.08 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.00 Total: -54.78 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.01 Total: -9.99 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.05 -6.62 -36.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049434081.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.843 kcal (2) G-P(sol) polarization free energy of solvation -30.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds