Wall clock time and date at job start Tue Mar 31 2020 13:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35729 * 117.00078 * 2 1 4 4 C 1.41853 * 126.78497 * 179.97438 * 3 2 1 5 5 C 1.36667 * 103.81328 * 180.02562 * 4 3 2 6 6 C 1.47536 * 126.88040 * 179.97438 * 5 4 3 7 7 O 1.21576 * 119.99966 * 7.07073 * 6 5 4 8 8 N 1.34777 * 120.00120 * 187.06523 * 6 5 4 9 9 C 1.46800 * 119.57885 * 187.06386 * 8 6 5 10 10 C 1.53467 * 107.59404 * 232.05356 * 9 8 6 11 11 C 1.52733 * 108.44211 * 301.92573 * 10 9 8 12 12 C 1.53012 * 110.80842 * 63.76253 * 11 10 9 13 13 H 1.09001 * 111.38429 * 68.76928 * 12 11 10 14 14 C 1.45129 * 119.57441 * 6.79181 * 8 6 5 15 15 H 1.08994 * 109.96638 * 11.93057 * 14 8 6 16 16 C 1.54419 * 111.60394 * 248.64523 * 14 8 6 17 17 C 1.54570 * 102.44468 * 203.41928 * 16 14 8 18 18 N 1.48212 * 107.11583 * 191.93296 * 12 11 10 19 19 C 1.36940 * 125.76572 * 270.86026 * 18 12 11 20 20 H 1.08002 * 119.99705 * 4.30994 * 19 18 12 21 21 C 1.38812 * 119.99823 * 184.30393 * 19 18 12 22 22 N 1.31614 * 119.99861 * 351.79046 * 21 19 18 23 23 Si 1.86802 * 119.99924 * 171.79048 * 21 19 18 24 24 H 1.48495 * 109.47240 * 94.97725 * 23 21 19 25 25 H 1.48500 * 109.46996 * 214.97818 * 23 21 19 26 26 H 1.48496 * 109.46986 * 334.97634 * 23 21 19 27 27 O 1.34661 * 106.23627 * 0.02562 * 5 4 3 28 28 N 1.20875 * 111.63535 * 0.02562 * 27 5 4 29 29 H 1.08995 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47170 * 300.00188 * 1 2 3 31 31 H 1.09000 * 109.46784 * 60.00038 * 1 2 3 32 32 H 1.08002 * 128.09494 * 359.97438 * 4 3 2 33 33 H 1.08998 * 109.83384 * 351.58213 * 9 8 6 34 34 H 1.09005 * 109.83243 * 112.47140 * 9 8 6 35 35 H 1.09005 * 109.63654 * 61.60828 * 10 9 8 36 36 H 1.08992 * 109.63883 * 182.02043 * 10 9 8 37 37 H 1.08998 * 109.20948 * 184.10768 * 11 10 9 38 38 H 1.09004 * 109.20530 * 303.46432 * 11 10 9 39 39 H 1.08998 * 110.81491 * 321.65889 * 16 14 8 40 40 H 1.09002 * 110.80987 * 84.98905 * 16 14 8 41 41 H 1.08998 * 109.88716 * 141.08958 * 17 16 14 42 42 H 1.08997 * 109.88417 * 262.26772 * 17 16 14 43 43 H 0.97002 * 120.00191 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4431 1.4504 0.0005 5 6 3.5392 2.8137 0.0009 6 6 4.7786 3.6140 0.0020 7 8 5.8561 3.0660 -0.1269 8 7 4.7163 4.9527 0.1458 9 6 5.9353 5.7557 -0.0097 10 6 6.0656 6.6465 1.2332 11 6 4.8090 7.5074 1.3445 12 6 3.5715 6.6363 1.5702 13 1 3.5867 6.1720 2.5563 14 6 3.4437 5.5823 0.4464 15 1 2.7107 4.8255 0.7256 16 6 2.9323 6.4264 -0.7412 17 6 1.9858 7.4344 -0.0504 18 7 2.3858 7.5040 1.3753 19 6 1.7689 8.2463 2.3467 20 1 2.1847 8.2846 3.3427 21 6 0.6092 8.9497 2.0511 22 7 0.1915 9.0363 0.8060 23 14 -0.3584 9.7731 3.4204 24 1 0.0537 11.1954 3.5316 25 1 -1.8096 9.7008 3.1137 26 1 -0.0886 9.0778 4.7045 27 8 2.2759 3.2801 0.0011 28 7 1.4687 2.3804 0.0015 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 4.2442 0.7260 0.0014 33 1 6.8026 5.1001 -0.0875 34 1 5.8586 6.3751 -0.9034 35 1 6.1626 6.0231 2.1221 36 1 6.9436 7.2849 1.1359 37 1 4.9197 8.1970 2.1813 38 1 4.6824 8.0777 0.4242 39 1 3.7567 6.9433 -1.2324 40 1 2.3884 5.8047 -1.4524 41 1 2.0878 8.4159 -0.5132 42 1 0.9549 7.0897 -0.1304 43 1 -0.6187 9.5281 0.5993 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049434081.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:32 Heat of formation + Delta-G solvation = 25.068843 kcal Electronic energy + Delta-G solvation = -28507.202333 eV Core-core repulsion = 24557.373284 eV Total energy + Delta-G solvation = -3949.829048 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.16718 -41.69595 -39.94494 -39.64703 -36.60457 -34.50073 -34.33151 -33.97937 -32.73034 -30.80775 -29.79548 -28.64587 -26.73380 -26.26926 -24.72678 -24.19540 -23.23941 -22.11791 -21.80642 -20.59674 -19.23397 -19.10906 -18.59105 -18.01996 -17.56182 -16.99826 -16.73073 -16.63858 -16.25008 -16.06442 -15.89082 -15.41296 -15.07112 -14.93941 -14.75374 -14.28356 -14.11000 -13.71282 -13.48725 -13.15094 -13.10549 -12.93612 -12.72101 -12.64419 -12.56860 -12.35537 -12.26596 -12.04178 -11.93940 -11.66447 -11.50773 -11.44070 -11.10823 -11.04477 -10.64074 -10.46957 -9.75319 -8.85493 -7.82494 -5.14867 -0.42643 0.94609 1.36605 1.47671 1.49228 1.53545 1.57838 1.73816 2.08764 2.52056 2.93346 3.27450 3.36795 3.58275 3.65064 3.80857 3.88961 3.98859 4.06539 4.12917 4.21197 4.22929 4.28170 4.42366 4.53752 4.59836 4.62816 4.65039 4.69073 4.82372 4.87856 5.02628 5.07691 5.13040 5.36388 5.42747 5.48831 5.60757 5.68036 5.79246 5.80653 6.05924 6.21633 6.65827 6.95379 7.11479 7.78166 8.44322 9.28663 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011700 B = 0.004746 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.677061 B = 5898.826433 C = 7725.754114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.286 6.286 3 C 0.201 3.799 4 C -0.143 4.143 5 C -0.069 4.069 6 C 0.608 3.392 7 O -0.531 6.531 8 N -0.573 5.573 9 C 0.109 3.891 10 C -0.120 4.120 11 C -0.122 4.122 12 C 0.152 3.848 13 H 0.058 0.942 14 C 0.130 3.870 15 H 0.100 0.900 16 C -0.134 4.134 17 C 0.190 3.810 18 N -0.617 5.617 19 C -0.233 4.233 20 H 0.082 0.918 21 C -0.060 4.060 22 N -0.948 5.948 23 Si 0.968 3.032 24 H -0.288 1.288 25 H -0.297 1.297 26 H -0.270 1.270 27 O 0.111 5.889 28 N -0.408 5.408 29 H 0.141 0.859 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.213 0.787 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.101 0.899 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.012 0.988 42 H 0.016 0.984 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.586 -14.587 -3.103 17.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.192 6.192 3 C 0.004 3.996 4 C -0.165 4.165 5 C -0.134 4.134 6 C 0.393 3.607 7 O -0.409 6.409 8 N -0.303 5.303 9 C -0.011 4.011 10 C -0.159 4.159 11 C -0.162 4.162 12 C 0.045 3.955 13 H 0.076 0.924 14 C 0.024 3.976 15 H 0.117 0.883 16 C -0.173 4.173 17 C 0.065 3.935 18 N -0.342 5.342 19 C -0.362 4.362 20 H 0.099 0.901 21 C -0.253 4.253 22 N -0.596 5.596 23 Si 0.797 3.203 24 H -0.215 1.215 25 H -0.224 1.224 26 H -0.195 1.195 27 O 0.048 5.952 28 N -0.135 5.135 29 H 0.159 0.841 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.230 0.770 33 H 0.125 0.875 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.119 0.881 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.030 0.970 42 H 0.034 0.966 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 7.820 -14.610 -3.135 16.866 hybrid contribution -0.902 0.563 0.617 1.229 sum 6.918 -14.047 -2.519 15.860 Atomic orbital electron populations 1.23373 0.75004 1.06334 1.02321 1.86211 1.24314 1.19497 1.89205 1.22104 0.91037 0.86029 1.00442 1.22445 0.94636 0.94550 1.04873 1.24107 0.87004 0.94307 1.08001 1.16608 0.85013 0.81747 0.77324 1.90824 1.27205 1.70986 1.51874 1.47581 1.10536 1.05138 1.67022 1.22046 0.85825 0.94038 0.99191 1.21857 0.98093 0.98233 0.97691 1.21958 0.94404 0.98303 1.01519 1.21603 0.87907 0.90178 0.95839 0.92437 1.22073 0.83763 0.95586 0.96136 0.88251 1.22937 0.99726 0.97706 0.96895 1.21058 0.94573 0.94717 0.83110 1.45163 1.32112 1.51220 1.05676 1.19352 1.04287 1.21224 0.91311 0.90061 1.25512 0.99409 1.02070 0.98339 1.70153 1.24829 1.46960 1.17701 0.85215 0.77746 0.78132 0.79187 1.21524 1.22395 1.19528 1.85212 1.12255 1.29094 1.68676 1.74042 1.17130 0.97414 1.24901 0.84078 0.92560 0.92299 0.76976 0.87455 0.89499 0.91460 0.88077 0.93130 0.92761 0.89996 0.90542 0.96958 0.96586 0.94488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.73 113.37 1.22 1.62 16 2 O -0.29 -6.52 10.57 -90.53 -0.96 -7.48 16 3 C 0.20 5.35 8.00 85.78 0.69 6.03 16 4 C -0.14 -3.45 10.98 22.80 0.25 -3.20 16 5 C -0.07 -1.91 6.84 24.36 0.17 -1.74 16 6 C 0.61 17.09 7.64 86.70 0.66 17.75 16 7 O -0.53 -15.93 16.25 -3.95 -0.06 -16.00 16 8 N -0.57 -15.80 2.73 -797.35 -2.18 -17.97 16 9 C 0.11 2.47 6.17 86.48 0.53 3.01 16 10 C -0.12 -2.75 6.11 30.66 0.19 -2.57 16 11 C -0.12 -3.90 5.10 30.51 0.16 -3.74 16 12 C 0.15 5.74 3.61 45.21 0.16 5.90 16 13 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 14 C 0.13 4.30 2.69 46.28 0.12 4.42 16 15 H 0.10 3.54 4.38 -10.68 -0.05 3.50 16 16 C -0.13 -4.68 6.08 31.61 0.19 -4.48 16 17 C 0.19 9.01 5.23 86.58 0.45 9.46 16 18 N -0.62 -29.90 2.94 -663.46 -1.95 -31.86 16 19 C -0.23 -12.57 10.28 84.03 0.86 -11.71 16 20 H 0.08 4.22 7.84 -2.91 -0.02 4.20 16 21 C -0.06 -3.34 5.47 84.86 0.46 -2.88 16 22 N -0.95 -55.97 10.42 21.65 0.23 -55.74 16 23 Si 0.97 45.22 29.56 68.60 2.03 47.24 16 24 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 25 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 27 O 0.11 3.48 7.91 65.65 0.52 4.00 16 28 N -0.41 -12.62 11.50 -172.03 -1.98 -14.60 16 29 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.21 3.92 8.06 -2.91 -0.02 3.90 16 33 H 0.11 2.25 6.93 -2.39 -0.02 2.23 16 34 H 0.09 1.79 7.51 -2.38 -0.02 1.78 16 35 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.05 1.86 7.11 -2.38 -0.02 1.84 16 39 H 0.08 2.57 6.78 -2.39 -0.02 2.56 16 40 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.01 0.65 7.66 -2.39 -0.02 0.63 16 42 H 0.02 0.86 7.31 -2.39 -0.02 0.84 16 43 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -66.54 345.14 2.76 -63.78 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 1.00 Total: 10.74 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 6.12 Total: 17.88 kcal Atomic # 7 Polarization: -114.29 SS G_CDS: -5.88 Total: -120.17 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.50 Total: -19.47 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -66.54 2.76 -63.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049434081.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.851 kcal (2) G-P(sol) polarization free energy of solvation -66.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds