Wall clock time and date at job start Tue Mar 31 2020 13:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35725 * 117.00221 * 2 1 4 4 C 1.41862 * 126.78889 * 179.71299 * 3 2 1 5 5 C 1.36662 * 103.81138 * 180.25973 * 4 3 2 6 6 C 1.47545 * 126.87676 * 179.97438 * 5 4 3 7 7 O 1.21579 * 119.99783 * 354.45004 * 6 5 4 8 8 N 1.34771 * 119.99974 * 174.45075 * 6 5 4 9 9 C 1.47847 * 122.22921 * 5.24281 * 8 6 5 10 10 C 1.52254 * 111.32876 * 232.41955 * 9 8 6 11 11 C 1.53877 * 111.58248 * 311.74570 * 10 9 8 12 12 C 1.51085 * 107.33759 * 56.76405 * 11 10 9 13 13 H 1.08996 * 108.30497 * 51.23070 * 12 11 10 14 14 C 1.45731 * 122.22963 * 185.52329 * 8 6 5 15 15 H 1.08995 * 111.07301 * 240.53392 * 14 8 6 16 16 C 1.53437 * 116.36708 * 9.03734 * 14 8 6 17 17 C 1.55468 * 101.67076 * 152.71541 * 16 14 8 18 18 N 1.45573 * 120.04412 * 175.87877 * 12 11 10 19 19 C 1.36938 * 126.06618 * 330.96944 * 18 12 11 20 20 H 1.08004 * 120.00050 * 359.13740 * 19 18 12 21 21 C 1.38812 * 119.99914 * 179.12924 * 19 18 12 22 22 N 1.31619 * 119.99908 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00218 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47240 * 59.99742 * 23 21 19 25 25 H 1.48502 * 109.47266 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46781 * 300.00347 * 23 21 19 27 27 O 1.34657 * 106.24285 * 359.97438 * 5 4 3 28 28 N 1.20873 * 111.63302 * 0.02562 * 27 5 4 29 29 H 1.09002 * 109.47184 * 60.00130 * 1 2 3 30 30 H 1.09000 * 109.47258 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47560 * 300.00320 * 1 2 3 32 32 H 1.07997 * 128.09039 * 0.21501 * 4 3 2 33 33 H 1.09006 * 109.16072 * 352.88495 * 9 8 6 34 34 H 1.09001 * 109.16658 * 112.06885 * 9 8 6 35 35 H 1.08992 * 109.16446 * 191.11566 * 10 9 8 36 36 H 1.09002 * 108.85335 * 72.16364 * 10 9 8 37 37 H 1.08994 * 109.87943 * 297.30719 * 11 10 9 38 38 H 1.08998 * 109.94002 * 176.25609 * 11 10 9 39 39 H 1.09003 * 110.98257 * 270.81085 * 16 14 8 40 40 H 1.08997 * 110.98833 * 34.61581 * 16 14 8 41 41 H 1.09002 * 109.96283 * 96.77857 * 17 16 14 42 42 H 1.08998 * 109.95961 * 217.98551 * 17 16 14 43 43 H 0.97006 * 120.00179 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 3.4431 1.4504 0.0057 5 6 3.5390 2.8137 0.0090 6 6 4.7785 3.6141 0.0159 7 8 5.8572 3.0632 0.1210 8 7 4.7148 4.9558 -0.0943 9 6 3.4291 5.6855 -0.1106 10 6 3.3343 6.6137 -1.3137 11 6 4.6047 7.4677 -1.4711 12 6 5.7753 6.5182 -1.5753 13 1 5.5502 5.7804 -2.3453 14 6 5.9085 5.7835 -0.2115 15 1 5.9784 6.4898 0.6157 16 6 7.2351 5.0408 -0.4188 17 6 8.0741 6.1031 -1.1834 18 7 7.1133 7.0354 -1.8233 19 6 7.4209 8.1806 -2.5081 20 1 6.6323 8.7836 -2.9337 21 6 8.7461 8.5667 -2.6551 22 7 9.7070 7.8317 -2.1367 23 14 9.1657 10.1293 -3.5886 24 1 8.5254 11.2914 -2.9217 25 1 10.6388 10.3165 -3.6038 26 1 8.6664 10.0220 -4.9831 27 8 2.2758 3.2801 0.0048 28 7 1.4686 2.3805 0.0000 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 4.2441 0.7261 0.0077 33 1 2.6103 4.9669 -0.1498 34 1 3.3415 6.2766 0.8010 35 1 2.4751 7.2729 -1.1902 36 1 3.1956 6.0126 -2.2123 37 1 4.7273 8.1134 -0.6017 38 1 4.5363 8.0725 -2.3753 39 1 7.6969 4.7925 0.5369 40 1 7.0912 4.1465 -1.0251 41 1 8.7114 6.6465 -0.4858 42 1 8.6850 5.6174 -1.9443 43 1 10.6331 8.1017 -2.2391 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049434082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:36 Heat of formation + Delta-G solvation = 51.221037 kcal Electronic energy + Delta-G solvation = -28040.337176 eV Core-core repulsion = 24091.642172 eV Total energy + Delta-G solvation = -3948.695004 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.19407 -40.40439 -39.16782 -37.92931 -35.56363 -33.48329 -32.75459 -32.56524 -31.63583 -28.99036 -28.30093 -27.98210 -25.47430 -24.50239 -23.67394 -22.94776 -21.55083 -21.26933 -20.20433 -19.55253 -18.17179 -17.87389 -17.28867 -16.65941 -16.15076 -15.86993 -15.54446 -15.28859 -15.05677 -14.72106 -14.35280 -14.31333 -13.83761 -13.65287 -13.45417 -12.94012 -12.59429 -12.51915 -12.32184 -12.22819 -11.90573 -11.66881 -11.57555 -11.11957 -10.86378 -10.74372 -10.63230 -10.49509 -10.15270 -10.11827 -9.99772 -9.89773 -9.65056 -9.60981 -9.40642 -8.60906 -8.40424 -6.84905 -5.70766 -3.05164 0.61497 1.87731 2.34461 2.42150 2.95734 3.14912 3.40770 3.45200 3.46574 3.82620 4.32168 4.49112 4.57918 4.73590 4.78232 4.87647 4.97248 5.07908 5.11297 5.28130 5.32436 5.40756 5.44141 5.57677 5.65059 5.78945 5.82216 5.95669 6.01627 6.18871 6.26342 6.34786 6.47436 6.61927 6.66371 6.69120 6.81449 7.07597 7.37103 7.56804 7.63137 7.78985 7.81970 8.05838 8.23712 9.18561 9.81875 10.48637 11.41163 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.029906 B = 0.003075 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.028876 B = 9103.682277 C = 9674.810602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.282 6.282 3 C 0.207 3.793 4 C -0.159 4.159 5 C -0.046 4.046 6 C 0.600 3.400 7 O -0.500 6.500 8 N -0.582 5.582 9 C 0.098 3.902 10 C -0.128 4.128 11 C -0.116 4.116 12 C 0.158 3.842 13 H 0.020 0.980 14 C 0.116 3.884 15 H 0.087 0.913 16 C -0.132 4.132 17 C 0.174 3.826 18 N -0.592 5.592 19 C -0.228 4.228 20 H 0.079 0.921 21 C -0.006 4.006 22 N -0.920 5.920 23 Si 0.911 3.089 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 O 0.111 5.889 28 N -0.398 5.398 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.060 0.940 32 H 0.190 0.810 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.042 0.958 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.983 -10.873 5.997 21.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.188 6.188 3 C 0.009 3.991 4 C -0.182 4.182 5 C -0.112 4.112 6 C 0.384 3.616 7 O -0.375 6.375 8 N -0.314 5.314 9 C -0.024 4.024 10 C -0.167 4.167 11 C -0.155 4.155 12 C 0.048 3.952 13 H 0.037 0.963 14 C 0.012 3.988 15 H 0.105 0.895 16 C -0.170 4.170 17 C 0.050 3.950 18 N -0.317 5.317 19 C -0.356 4.356 20 H 0.096 0.904 21 C -0.203 4.203 22 N -0.567 5.567 23 Si 0.741 3.259 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 O 0.050 5.950 28 N -0.125 5.125 29 H 0.079 0.921 30 H 0.125 0.875 31 H 0.078 0.922 32 H 0.207 0.793 33 H 0.113 0.887 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.307 -10.951 5.976 22.154 hybrid contribution 0.517 0.440 -0.508 0.848 sum -17.789 -10.512 5.467 21.374 Atomic orbital electron populations 1.23091 0.76650 1.04211 1.02454 1.86218 1.22708 1.20493 1.89365 1.21862 0.90622 0.85766 1.00834 1.22177 0.94404 0.94962 1.06610 1.24365 0.86925 0.93946 1.05975 1.16579 0.84969 0.81481 0.78529 1.90899 1.26107 1.70755 1.49765 1.47978 1.09011 1.04544 1.69834 1.22068 0.84612 0.96028 0.99709 1.21813 0.99013 0.98073 0.97814 1.21444 0.93423 0.98090 1.02560 1.20870 0.87595 0.93973 0.92718 0.96311 1.22588 0.84500 0.92051 0.99627 0.89491 1.22977 0.93569 0.99139 1.01322 1.21732 0.90285 0.88020 0.94962 1.44238 0.98719 1.25961 1.62788 1.18953 0.91884 0.98313 1.26479 0.90364 1.24805 0.95668 0.98934 1.00888 1.69925 0.99073 1.38607 1.49111 0.86227 0.77173 0.82907 0.79596 1.21176 1.21628 1.21213 1.85041 1.12171 1.28878 1.68940 1.73951 1.16726 0.96839 1.24969 0.92118 0.87543 0.92152 0.79279 0.88734 0.90679 0.90430 0.91707 0.91597 0.91216 0.91561 0.90302 0.92419 0.94027 0.93627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.73 101.05 1.08 1.30 16 2 O -0.28 -2.97 10.57 -18.88 -0.20 -3.17 16 3 C 0.21 2.46 8.00 -16.72 -0.13 2.33 16 4 C -0.16 -1.91 10.97 -38.77 -0.43 -2.34 16 5 C -0.05 -0.60 7.02 -36.36 -0.26 -0.86 16 6 C 0.60 9.25 7.64 -12.47 -0.10 9.15 16 7 O -0.50 -8.98 13.87 5.30 0.07 -8.90 16 8 N -0.58 -8.77 2.92 -165.48 -0.48 -9.25 16 9 C 0.10 1.17 6.28 -3.68 -0.02 1.14 16 10 C -0.13 -1.57 5.90 -26.66 -0.16 -1.73 16 11 C -0.12 -1.89 5.50 -27.24 -0.15 -2.04 16 12 C 0.16 3.15 2.62 -68.07 -0.18 2.97 16 13 H 0.02 0.42 8.03 -51.93 -0.42 0.00 16 14 C 0.12 2.08 3.29 -66.80 -0.22 1.86 16 15 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 16 C -0.13 -2.65 4.98 -25.19 -0.13 -2.77 16 17 C 0.17 4.25 5.48 -1.69 -0.01 4.24 16 18 N -0.59 -14.72 3.36 -162.89 -0.55 -15.27 16 19 C -0.23 -6.15 9.95 -15.06 -0.15 -6.30 16 20 H 0.08 2.02 7.35 -52.48 -0.39 1.63 16 21 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 22 N -0.92 -26.79 10.46 55.49 0.58 -26.21 16 23 Si 0.91 21.80 29.55 -169.99 -5.02 16.77 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 O 0.11 1.36 7.84 15.51 0.12 1.48 16 28 N -0.40 -4.88 11.50 30.47 0.35 -4.53 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.19 1.98 8.06 -52.49 -0.42 1.56 16 33 H 0.10 1.02 4.06 -53.28 -0.22 0.81 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.07 1.06 8.12 -51.93 -0.42 0.64 16 38 H 0.07 1.18 7.74 -51.93 -0.40 0.78 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 40 H 0.08 1.64 6.32 -51.93 -0.33 1.31 16 41 H 0.06 1.53 7.19 -51.93 -0.37 1.16 16 42 H 0.04 1.12 7.81 -51.93 -0.41 0.71 16 43 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 343.35 15.07 5.17 5.17 Total: -1.00 -31.19 343.35 -6.78 -37.97 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -5.89 Total: -0.76 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -0.93 Total: 6.69 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -0.10 Total: -55.25 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.00 Total: -10.59 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.19 -6.78 -37.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049434082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.191 kcal (2) G-P(sol) polarization free energy of solvation -31.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds