Wall clock time and date at job start Tue Mar 31 2020 13:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35725 * 117.00221 * 2 1 4 4 C 1.41862 * 126.78889 * 179.71299 * 3 2 1 5 5 C 1.36662 * 103.81138 * 180.25973 * 4 3 2 6 6 C 1.47545 * 126.87676 * 179.97438 * 5 4 3 7 7 O 1.21579 * 119.99783 * 354.45004 * 6 5 4 8 8 N 1.34771 * 119.99974 * 174.45075 * 6 5 4 9 9 C 1.47847 * 122.22921 * 5.24281 * 8 6 5 10 10 C 1.52254 * 111.32876 * 232.41955 * 9 8 6 11 11 C 1.53877 * 111.58248 * 311.74570 * 10 9 8 12 12 C 1.51085 * 107.33759 * 56.76405 * 11 10 9 13 13 H 1.08996 * 108.30497 * 51.23070 * 12 11 10 14 14 C 1.45731 * 122.22963 * 185.52329 * 8 6 5 15 15 H 1.08995 * 111.07301 * 240.53392 * 14 8 6 16 16 C 1.53437 * 116.36708 * 9.03734 * 14 8 6 17 17 C 1.55468 * 101.67076 * 152.71541 * 16 14 8 18 18 N 1.45573 * 120.04412 * 175.87877 * 12 11 10 19 19 C 1.36938 * 126.06618 * 330.96944 * 18 12 11 20 20 H 1.08004 * 120.00050 * 359.13740 * 19 18 12 21 21 C 1.38812 * 119.99914 * 179.12924 * 19 18 12 22 22 N 1.31619 * 119.99908 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00218 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47240 * 59.99742 * 23 21 19 25 25 H 1.48502 * 109.47266 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46781 * 300.00347 * 23 21 19 27 27 O 1.34657 * 106.24285 * 359.97438 * 5 4 3 28 28 N 1.20873 * 111.63302 * 0.02562 * 27 5 4 29 29 H 1.09002 * 109.47184 * 60.00130 * 1 2 3 30 30 H 1.09000 * 109.47258 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47560 * 300.00320 * 1 2 3 32 32 H 1.07997 * 128.09039 * 0.21501 * 4 3 2 33 33 H 1.09006 * 109.16072 * 352.88495 * 9 8 6 34 34 H 1.09001 * 109.16658 * 112.06885 * 9 8 6 35 35 H 1.08992 * 109.16446 * 191.11566 * 10 9 8 36 36 H 1.09002 * 108.85335 * 72.16364 * 10 9 8 37 37 H 1.08994 * 109.87943 * 297.30719 * 11 10 9 38 38 H 1.08998 * 109.94002 * 176.25609 * 11 10 9 39 39 H 1.09003 * 110.98257 * 270.81085 * 16 14 8 40 40 H 1.08997 * 110.98833 * 34.61581 * 16 14 8 41 41 H 1.09002 * 109.96283 * 96.77857 * 17 16 14 42 42 H 1.08998 * 109.95961 * 217.98551 * 17 16 14 43 43 H 0.97006 * 120.00179 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 3.4431 1.4504 0.0057 5 6 3.5390 2.8137 0.0090 6 6 4.7785 3.6141 0.0159 7 8 5.8572 3.0632 0.1210 8 7 4.7148 4.9558 -0.0943 9 6 3.4291 5.6855 -0.1106 10 6 3.3343 6.6137 -1.3137 11 6 4.6047 7.4677 -1.4711 12 6 5.7753 6.5182 -1.5753 13 1 5.5502 5.7804 -2.3453 14 6 5.9085 5.7835 -0.2115 15 1 5.9784 6.4898 0.6157 16 6 7.2351 5.0408 -0.4188 17 6 8.0741 6.1031 -1.1834 18 7 7.1133 7.0354 -1.8233 19 6 7.4209 8.1806 -2.5081 20 1 6.6323 8.7836 -2.9337 21 6 8.7461 8.5667 -2.6551 22 7 9.7070 7.8317 -2.1367 23 14 9.1657 10.1293 -3.5886 24 1 8.5254 11.2914 -2.9217 25 1 10.6388 10.3165 -3.6038 26 1 8.6664 10.0220 -4.9831 27 8 2.2758 3.2801 0.0048 28 7 1.4686 2.3805 0.0000 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 4.2441 0.7261 0.0077 33 1 2.6103 4.9669 -0.1498 34 1 3.3415 6.2766 0.8010 35 1 2.4751 7.2729 -1.1902 36 1 3.1956 6.0126 -2.2123 37 1 4.7273 8.1134 -0.6017 38 1 4.5363 8.0725 -2.3753 39 1 7.6969 4.7925 0.5369 40 1 7.0912 4.1465 -1.0251 41 1 8.7114 6.6465 -0.4858 42 1 8.6850 5.6174 -1.9443 43 1 10.6331 8.1017 -2.2391 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049434082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:35 Heat of formation + Delta-G solvation = 29.382209 kcal Electronic energy + Delta-G solvation = -28041.284179 eV Core-core repulsion = 24091.642172 eV Total energy + Delta-G solvation = -3949.642007 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -46.13806 -41.74177 -39.94545 -39.36158 -37.05467 -34.43873 -34.31884 -34.00882 -32.89742 -30.77528 -29.74573 -28.61305 -26.82467 -26.29531 -24.69326 -24.09767 -22.86755 -22.57836 -21.63173 -21.05066 -19.16752 -19.05712 -18.36867 -18.16424 -17.39199 -16.92398 -16.68971 -16.59853 -16.33563 -16.08430 -15.71968 -15.41504 -15.33132 -15.05406 -14.77028 -14.30394 -14.10703 -13.89325 -13.42771 -13.16607 -13.13480 -12.89952 -12.86726 -12.66611 -12.60920 -12.29608 -12.11739 -11.95280 -11.78546 -11.67848 -11.53895 -11.48687 -11.02793 -10.89216 -10.65811 -10.46218 -9.70535 -8.88839 -7.81310 -5.17720 -0.40769 0.94919 1.28794 1.48439 1.51516 1.54712 1.57749 1.81098 2.07889 2.52866 2.92607 3.23046 3.37398 3.51707 3.64551 3.87424 3.98263 4.01492 4.05254 4.07316 4.25004 4.27118 4.30853 4.34235 4.54730 4.57619 4.58399 4.65430 4.66530 4.88641 4.89729 5.02146 5.10743 5.16284 5.30628 5.38541 5.51517 5.57596 5.61995 5.74530 5.84727 6.18267 6.20478 6.71470 6.96361 7.08806 7.78426 8.46560 9.30101 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.029906 B = 0.003075 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.028876 B = 9103.682277 C = 9674.810602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.290 6.290 3 C 0.206 3.794 4 C -0.153 4.153 5 C -0.053 4.053 6 C 0.602 3.398 7 O -0.533 6.533 8 N -0.583 5.583 9 C 0.096 3.904 10 C -0.119 4.119 11 C -0.111 4.111 12 C 0.151 3.849 13 H 0.002 0.998 14 C 0.132 3.868 15 H 0.094 0.906 16 C -0.115 4.115 17 C 0.184 3.816 18 N -0.612 5.612 19 C -0.232 4.232 20 H 0.089 0.911 21 C -0.069 4.069 22 N -0.954 5.954 23 Si 0.977 3.023 24 H -0.273 1.273 25 H -0.299 1.299 26 H -0.279 1.279 27 O 0.118 5.882 28 N -0.398 5.398 29 H 0.061 0.939 30 H 0.136 0.864 31 H 0.063 0.937 32 H 0.201 0.799 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.115 0.885 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.028 0.972 42 H 0.002 0.998 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.303 -10.865 6.515 24.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.196 6.196 3 C 0.009 3.991 4 C -0.175 4.175 5 C -0.119 4.119 6 C 0.387 3.613 7 O -0.410 6.410 8 N -0.314 5.314 9 C -0.025 4.025 10 C -0.157 4.157 11 C -0.150 4.150 12 C 0.043 3.957 13 H 0.020 0.980 14 C 0.028 3.972 15 H 0.112 0.888 16 C -0.154 4.154 17 C 0.059 3.941 18 N -0.337 5.337 19 C -0.361 4.361 20 H 0.107 0.893 21 C -0.261 4.261 22 N -0.603 5.603 23 Si 0.805 3.195 24 H -0.199 1.199 25 H -0.225 1.225 26 H -0.205 1.205 27 O 0.055 5.945 28 N -0.126 5.126 29 H 0.080 0.920 30 H 0.154 0.846 31 H 0.082 0.918 32 H 0.218 0.782 33 H 0.129 0.871 34 H 0.117 0.883 35 H 0.133 0.867 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.047 0.953 42 H 0.020 0.980 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -21.713 -10.953 6.497 25.172 hybrid contribution 1.441 0.325 -0.692 1.631 sum -20.273 -10.628 5.805 23.614 Atomic orbital electron populations 1.23398 0.74721 1.06322 1.02630 1.86232 1.24619 1.19712 1.89077 1.21934 0.90603 0.86154 1.00428 1.22398 0.95059 0.94851 1.05226 1.23815 0.86560 0.93849 1.07631 1.16745 0.85370 0.81463 0.77677 1.90881 1.27602 1.71381 1.51155 1.47993 1.09128 1.04555 1.69687 1.22346 0.83178 0.96343 1.00656 1.21789 0.97962 0.98034 0.97913 1.21420 0.93439 0.97825 1.02320 1.21056 0.86755 0.94757 0.93152 0.98022 1.22187 0.84579 0.91834 0.98607 0.88816 1.22725 0.94490 0.97432 1.00726 1.21432 0.90584 0.88541 0.93553 1.44481 1.01001 1.25492 1.62723 1.19379 0.92193 0.98675 1.25854 0.89312 1.25661 0.95778 1.02192 1.02496 1.70155 0.98903 1.40342 1.50933 0.85173 0.76230 0.79545 0.78509 1.19858 1.22508 1.20531 1.85012 1.11620 1.28845 1.69017 1.73928 1.16546 0.97057 1.25032 0.92012 0.84603 0.91838 0.78173 0.87134 0.88260 0.86657 0.92040 0.91157 0.92161 0.90778 0.91061 0.95336 0.97993 0.94482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.73 113.37 1.22 1.48 16 2 O -0.29 -5.44 10.57 -90.48 -0.96 -6.39 16 3 C 0.21 4.45 8.00 85.78 0.69 5.14 16 4 C -0.15 -3.40 10.97 22.80 0.25 -3.15 16 5 C -0.05 -1.28 7.02 24.36 0.17 -1.11 16 6 C 0.60 17.82 7.64 86.70 0.66 18.48 16 7 O -0.53 -19.00 13.87 -3.97 -0.06 -19.06 16 8 N -0.58 -16.56 2.92 -795.73 -2.32 -18.88 16 9 C 0.10 1.94 6.28 85.87 0.54 2.48 16 10 C -0.12 -2.50 5.90 30.64 0.18 -2.31 16 11 C -0.11 -3.41 5.50 30.27 0.17 -3.24 16 12 C 0.15 6.00 2.62 45.40 0.12 6.12 16 13 H 0.00 0.10 8.03 -2.39 -0.02 0.08 16 14 C 0.13 4.69 3.29 46.14 0.15 4.84 16 15 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 16 C -0.12 -4.77 4.98 31.59 0.16 -4.61 16 17 C 0.18 9.46 5.48 86.87 0.48 9.94 16 18 N -0.61 -31.25 3.36 -669.26 -2.25 -33.51 16 19 C -0.23 -12.72 9.95 84.03 0.84 -11.89 16 20 H 0.09 4.55 7.35 -2.91 -0.02 4.53 16 21 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 22 N -0.95 -58.03 10.46 21.65 0.23 -57.80 16 23 Si 0.98 45.53 29.55 68.60 2.03 47.56 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 25 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 26 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 27 O 0.12 2.55 7.84 65.69 0.52 3.06 16 28 N -0.40 -8.74 11.50 -172.01 -1.98 -10.71 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.20 3.89 8.06 -2.91 -0.02 3.87 16 33 H 0.11 1.97 4.06 -23.85 -0.10 1.87 16 34 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.12 1.66 8.14 -2.39 -0.02 1.65 16 36 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 2.10 8.12 -2.39 -0.02 2.08 16 38 H 0.06 1.95 7.74 -2.39 -0.02 1.93 16 39 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 40 H 0.07 3.07 6.32 -2.39 -0.02 3.05 16 41 H 0.03 1.61 7.19 -2.39 -0.02 1.59 16 42 H 0.00 0.10 7.81 -2.39 -0.02 0.09 16 43 H 0.25 14.64 8.31 -92.70 -0.77 13.87 16 Total: -1.00 -70.23 343.35 2.23 -68.01 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 0.95 Total: 8.99 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: 6.08 Total: 18.73 kcal Atomic # 7 Polarization: -114.57 SS G_CDS: -6.33 Total: -120.90 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.50 Total: -22.39 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -70.23 2.23 -68.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049434082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.387 kcal (2) G-P(sol) polarization free energy of solvation -70.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds