Wall clock time and date at job start Tue Mar 31 2020 13:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 O 1.20923 * 124.56844 * 2 1 4 4 C 1.34165 * 112.19376 * 180.26248 * 3 2 1 5 5 C 1.48203 * 126.38625 * 179.97438 * 4 3 2 6 6 O 1.21495 * 119.99932 * 186.77576 * 5 4 3 7 7 N 1.34772 * 119.99935 * 6.78021 * 5 4 3 8 8 C 1.46801 * 119.57549 * 186.82098 * 7 5 4 9 9 C 1.53013 * 107.83218 * 231.98626 * 8 7 5 10 10 C 1.52737 * 108.53235 * 302.15881 * 9 8 7 11 11 C 1.53009 * 110.80179 * 63.64740 * 10 9 8 12 12 H 1.08996 * 112.10151 * 69.27905 * 11 10 9 13 13 C 1.45125 * 119.57713 * 7.08726 * 7 5 4 14 14 H 1.09000 * 109.96607 * 11.94250 * 13 7 5 15 15 C 1.54410 * 111.60956 * 248.65765 * 13 7 5 16 16 C 1.54563 * 102.45007 * 203.42324 * 15 13 7 17 17 N 1.47117 * 107.25419 * 21.66901 * 16 15 13 18 18 C 1.36939 * 125.76996 * 182.62691 * 17 16 15 19 19 H 1.08003 * 120.00028 * 184.07924 * 18 17 16 20 20 C 1.38812 * 119.99980 * 4.06752 * 18 17 16 21 21 N 1.31624 * 119.99698 * 351.80279 * 20 18 17 22 22 Si 1.86796 * 120.00105 * 171.79433 * 20 18 17 23 23 H 1.48507 * 109.46964 * 94.98345 * 22 20 18 24 24 H 1.48502 * 109.47128 * 214.98289 * 22 20 18 25 25 H 1.48504 * 109.47134 * 334.98544 * 22 20 18 26 26 C 1.36317 * 107.22964 * 0.02562 * 4 3 2 27 27 C 1.34828 * 124.56537 * 180.29735 * 2 1 3 28 28 O 1.21978 * 127.15104 * 359.77674 * 27 2 1 29 29 H 1.08998 * 109.47197 * 269.70097 * 1 2 3 30 30 H 1.08997 * 109.47397 * 29.69811 * 1 2 3 31 31 H 1.09002 * 109.47342 * 149.70159 * 1 2 3 32 32 H 1.08993 * 109.83463 * 351.56835 * 8 7 5 33 33 H 1.09000 * 109.83538 * 112.52548 * 8 7 5 34 34 H 1.09011 * 109.69855 * 182.38378 * 9 8 7 35 35 H 1.08998 * 109.67218 * 61.91549 * 9 8 7 36 36 H 1.09005 * 109.20694 * 303.30793 * 10 9 8 37 37 H 1.08999 * 109.21247 * 183.98996 * 10 9 8 38 38 H 1.09007 * 110.81072 * 321.66134 * 15 13 7 39 39 H 1.08998 * 110.81417 * 85.17999 * 15 13 7 40 40 H 1.09002 * 109.88864 * 262.25248 * 16 15 13 41 41 H 1.09003 * 109.88765 * 141.08340 * 16 15 13 42 42 H 0.97009 * 119.99580 * 179.97438 * 21 20 18 43 43 H 1.08004 * 127.99801 * 179.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 8 2.1510 0.9957 0.0000 4 6 3.4615 0.7082 -0.0057 5 6 4.5759 1.6852 -0.0079 6 8 5.7210 1.3002 -0.1373 7 7 4.3192 3.0006 0.1337 8 6 5.4089 3.9722 -0.0197 9 6 5.4087 4.8755 1.2154 10 6 4.0401 5.5442 1.3276 11 6 2.9434 4.5022 1.5576 12 1 3.0118 4.0461 2.5451 13 6 2.9701 3.4380 0.4417 14 1 2.3577 2.5829 0.7275 15 6 2.3329 4.1945 -0.7441 16 6 1.2536 5.0551 -0.0489 17 7 1.6435 5.1871 1.3634 18 6 0.9263 5.8331 2.3349 19 1 1.3322 5.9306 3.3309 20 6 -0.3222 6.3627 2.0392 21 7 -0.7481 6.3886 0.7941 22 14 -1.3981 7.0387 3.4085 23 1 -1.1944 8.5055 3.5197 24 1 -2.8238 6.7587 3.1018 25 1 -1.0312 6.3892 4.6926 26 6 3.5769 -0.6500 -0.0102 27 6 2.2299 -1.1103 -0.0058 28 8 1.8472 -2.2685 -0.0080 29 1 -0.3633 -0.0054 1.0276 30 1 -0.3634 0.8926 -0.5091 31 1 -0.3634 -0.8873 -0.5185 32 1 6.3625 3.4497 -0.0940 33 1 5.2451 4.5736 -0.9139 34 1 6.1816 5.6374 1.1135 35 1 5.5987 4.2780 2.1070 36 1 3.8303 6.0884 0.4067 37 1 4.0504 6.2444 2.1628 38 1 3.0696 4.8250 -1.2420 39 1 1.8784 3.4979 -1.4485 40 1 0.2836 4.5631 -0.1214 41 1 1.2078 6.0397 -0.5145 42 1 -1.6208 6.7584 0.5875 43 1 4.4812 -1.2405 -0.0157 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049445549.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:21 Heat of formation + Delta-G solvation = 58.594625 kcal Electronic energy + Delta-G solvation = -28935.609049 eV Core-core repulsion = 24987.233788 eV Total energy + Delta-G solvation = -3948.375261 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.14526 -40.58757 -38.45068 -38.14516 -35.26391 -34.45405 -32.92572 -32.27675 -32.23565 -29.26975 -28.71662 -27.86608 -25.33248 -24.54703 -23.68663 -22.93820 -22.06592 -20.60207 -20.16256 -19.15661 -18.45084 -17.79025 -17.31576 -16.92436 -16.30498 -15.28648 -15.21950 -15.08430 -14.89732 -14.58935 -14.18024 -13.89244 -13.80796 -13.72693 -13.52150 -13.38844 -13.04253 -12.90524 -12.73439 -12.18858 -12.09604 -11.54808 -11.14795 -11.09146 -10.98374 -10.82054 -10.70094 -10.55609 -10.22607 -10.18934 -10.09003 -10.05194 -9.79108 -9.77751 -8.73935 -8.62361 -8.51608 -7.02106 -5.86875 -3.19598 0.47708 1.54352 2.49668 2.63960 2.90794 3.25675 3.31244 3.38061 3.38950 4.19991 4.39187 4.62629 4.90642 4.94686 5.04221 5.06718 5.07825 5.11083 5.17545 5.35462 5.38096 5.38995 5.44097 5.51007 5.65268 5.69216 5.86095 5.92315 5.98299 6.04576 6.10937 6.17420 6.30154 6.32311 6.53942 6.65204 6.88167 7.15421 7.39601 7.42287 7.54548 7.66994 7.75557 7.97267 8.07749 9.05657 9.65426 10.30049 11.24857 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012510 B = 0.005098 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.622881 B = 5490.659145 C = 7157.920659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.452 5.452 3 O 0.010 5.990 4 C 0.035 3.965 5 C 0.597 3.403 6 O -0.510 6.510 7 N -0.575 5.575 8 C 0.112 3.888 9 C -0.134 4.134 10 C -0.131 4.131 11 C 0.158 3.842 12 H 0.063 0.937 13 C 0.113 3.887 14 H 0.106 0.894 15 C -0.151 4.151 16 C 0.180 3.820 17 N -0.597 5.597 18 C -0.230 4.230 19 H 0.079 0.921 20 C -0.003 4.003 21 N -0.918 5.918 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.280 1.280 26 C -0.243 4.243 27 C 0.480 3.520 28 O -0.531 6.531 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.051 0.949 41 H 0.044 0.956 42 H 0.253 0.747 43 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.499 -6.575 -3.275 10.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.215 5.215 3 O 0.001 5.999 4 C -0.024 4.024 5 C 0.381 3.619 6 O -0.386 6.386 7 N -0.305 5.305 8 C -0.009 4.009 9 C -0.172 4.172 10 C -0.171 4.171 11 C 0.049 3.951 12 H 0.081 0.919 13 C 0.008 3.992 14 H 0.124 0.876 15 C -0.190 4.190 16 C 0.055 3.945 17 N -0.321 5.321 18 C -0.358 4.358 19 H 0.097 0.903 20 C -0.199 4.199 21 N -0.565 5.565 22 Si 0.739 3.261 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.206 1.206 26 C -0.268 4.268 27 C 0.278 3.722 28 O -0.412 6.412 29 H 0.102 0.898 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 7.315 -7.030 -3.326 10.677 hybrid contribution -0.725 0.549 0.668 1.128 sum 6.590 -6.481 -2.658 9.618 Atomic orbital electron populations 1.22189 0.70526 1.05693 1.04840 1.46257 1.06223 1.00151 1.68863 1.84422 1.15132 1.20180 1.80194 1.23411 0.82079 0.96170 1.00725 1.16943 0.85422 0.81377 0.78170 1.90837 1.18705 1.78249 1.50814 1.47677 1.11134 1.04843 1.66826 1.21770 0.89885 0.90302 0.98939 1.21863 0.99022 0.98836 0.97525 1.22138 0.92979 0.99255 1.02743 1.21347 0.87852 0.90642 0.95240 0.91877 1.22411 0.80176 0.98838 0.97773 0.87640 1.23155 0.99877 0.99228 0.96777 1.21191 0.93270 0.96818 0.83203 1.44706 1.19072 1.62379 1.05974 1.19011 0.97304 1.28918 0.90577 0.90344 1.24785 0.97615 1.01034 0.96506 1.69963 1.20040 1.50452 1.16058 0.86164 0.80186 0.78625 0.81173 1.21623 1.21592 1.20600 1.23257 0.99670 0.93203 1.10718 1.18321 0.86648 0.85543 0.81685 1.90946 1.79121 1.15930 1.55235 0.89822 0.88344 0.87850 0.88673 0.90679 0.90821 0.91615 0.91617 0.91801 0.91673 0.91852 0.93085 0.93735 0.93640 0.79190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.05 11.22 59.84 0.67 1.72 16 2 N -0.45 -6.06 3.68 -69.77 -0.26 -6.32 16 3 O 0.01 0.14 7.55 16.84 0.13 0.27 16 4 C 0.03 0.48 6.82 -36.18 -0.25 0.23 16 5 C 0.60 8.56 7.66 -12.17 -0.09 8.47 16 6 O -0.51 -8.05 16.23 5.37 0.09 -7.96 16 7 N -0.57 -7.96 2.74 -166.27 -0.46 -8.41 16 8 C 0.11 1.36 6.15 -3.87 -0.02 1.33 16 9 C -0.13 -1.63 6.09 -26.86 -0.16 -1.79 16 10 C -0.13 -2.05 5.10 -26.86 -0.14 -2.19 16 11 C 0.16 2.82 3.60 -66.35 -0.24 2.58 16 12 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 13 C 0.11 1.75 2.67 -67.29 -0.18 1.57 16 14 H 0.11 1.70 4.38 -52.52 -0.23 1.47 16 15 C -0.15 -2.46 6.08 -25.17 -0.15 -2.61 16 16 C 0.18 3.83 5.19 -2.88 -0.01 3.82 16 17 N -0.60 -13.31 2.91 -162.20 -0.47 -13.78 16 18 C -0.23 -5.81 10.28 -15.06 -0.15 -5.97 16 19 H 0.08 1.94 7.84 -52.48 -0.41 1.53 16 20 C 0.00 -0.07 5.47 -17.43 -0.10 -0.17 16 21 N -0.92 -24.88 10.39 55.49 0.58 -24.30 16 22 Si 0.91 20.73 29.56 -169.99 -5.03 15.70 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 26 C -0.24 -3.32 10.94 -38.70 -0.42 -3.75 16 27 C 0.48 7.26 8.02 -14.66 -0.12 7.14 16 28 O -0.53 -9.46 17.84 4.94 0.09 -9.37 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.10 0.92 8.03 -51.93 -0.42 0.50 16 32 H 0.09 1.11 6.93 -51.93 -0.36 0.75 16 33 H 0.07 0.85 7.54 -51.93 -0.39 0.46 16 34 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 1.10 7.12 -51.93 -0.37 0.73 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 1.00 6.83 -51.92 -0.35 0.65 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.05 1.21 7.31 -51.93 -0.38 0.83 16 41 H 0.04 1.07 7.62 -51.93 -0.40 0.68 16 42 H 0.25 6.73 8.31 -40.82 -0.34 6.40 16 43 H 0.19 2.27 8.06 -52.48 -0.42 1.84 16 LS Contribution 344.50 15.07 5.19 5.19 Total: -1.00 -30.42 344.50 -7.34 -37.75 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.83 Total: 0.83 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: -1.37 Total: 10.40 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.61 Total: -52.82 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: 0.30 Total: -17.06 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.42 -7.34 -37.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049445549.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.349 kcal (2) G-P(sol) polarization free energy of solvation -30.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds