Wall clock time and date at job start Tue Mar 31 2020 13:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 O 1.20923 * 124.56844 * 2 1 4 4 C 1.34165 * 112.19376 * 180.26248 * 3 2 1 5 5 C 1.48203 * 126.38625 * 179.97438 * 4 3 2 6 6 O 1.21495 * 119.99932 * 186.77576 * 5 4 3 7 7 N 1.34772 * 119.99935 * 6.78021 * 5 4 3 8 8 C 1.46801 * 119.57549 * 186.82098 * 7 5 4 9 9 C 1.53013 * 107.83218 * 231.98626 * 8 7 5 10 10 C 1.52737 * 108.53235 * 302.15881 * 9 8 7 11 11 C 1.53009 * 110.80179 * 63.64740 * 10 9 8 12 12 H 1.08996 * 112.10151 * 69.27905 * 11 10 9 13 13 C 1.45125 * 119.57713 * 7.08726 * 7 5 4 14 14 H 1.09000 * 109.96607 * 11.94250 * 13 7 5 15 15 C 1.54410 * 111.60956 * 248.65765 * 13 7 5 16 16 C 1.54563 * 102.45007 * 203.42324 * 15 13 7 17 17 N 1.47117 * 107.25419 * 21.66901 * 16 15 13 18 18 C 1.36939 * 125.76996 * 182.62691 * 17 16 15 19 19 H 1.08003 * 120.00028 * 184.07924 * 18 17 16 20 20 C 1.38812 * 119.99980 * 4.06752 * 18 17 16 21 21 N 1.31624 * 119.99698 * 351.80279 * 20 18 17 22 22 Si 1.86796 * 120.00105 * 171.79433 * 20 18 17 23 23 H 1.48507 * 109.46964 * 94.98345 * 22 20 18 24 24 H 1.48502 * 109.47128 * 214.98289 * 22 20 18 25 25 H 1.48504 * 109.47134 * 334.98544 * 22 20 18 26 26 C 1.36317 * 107.22964 * 0.02562 * 4 3 2 27 27 C 1.34828 * 124.56537 * 180.29735 * 2 1 3 28 28 O 1.21978 * 127.15104 * 359.77674 * 27 2 1 29 29 H 1.08998 * 109.47197 * 269.70097 * 1 2 3 30 30 H 1.08997 * 109.47397 * 29.69811 * 1 2 3 31 31 H 1.09002 * 109.47342 * 149.70159 * 1 2 3 32 32 H 1.08993 * 109.83463 * 351.56835 * 8 7 5 33 33 H 1.09000 * 109.83538 * 112.52548 * 8 7 5 34 34 H 1.09011 * 109.69855 * 182.38378 * 9 8 7 35 35 H 1.08998 * 109.67218 * 61.91549 * 9 8 7 36 36 H 1.09005 * 109.20694 * 303.30793 * 10 9 8 37 37 H 1.08999 * 109.21247 * 183.98996 * 10 9 8 38 38 H 1.09007 * 110.81072 * 321.66134 * 15 13 7 39 39 H 1.08998 * 110.81417 * 85.17999 * 15 13 7 40 40 H 1.09002 * 109.88864 * 262.25248 * 16 15 13 41 41 H 1.09003 * 109.88765 * 141.08340 * 16 15 13 42 42 H 0.97009 * 119.99580 * 179.97438 * 21 20 18 43 43 H 1.08004 * 127.99801 * 179.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 8 2.1510 0.9957 0.0000 4 6 3.4615 0.7082 -0.0057 5 6 4.5759 1.6852 -0.0079 6 8 5.7210 1.3002 -0.1373 7 7 4.3192 3.0006 0.1337 8 6 5.4089 3.9722 -0.0197 9 6 5.4087 4.8755 1.2154 10 6 4.0401 5.5442 1.3276 11 6 2.9434 4.5022 1.5576 12 1 3.0118 4.0461 2.5451 13 6 2.9701 3.4380 0.4417 14 1 2.3577 2.5829 0.7275 15 6 2.3329 4.1945 -0.7441 16 6 1.2536 5.0551 -0.0489 17 7 1.6435 5.1871 1.3634 18 6 0.9263 5.8331 2.3349 19 1 1.3322 5.9306 3.3309 20 6 -0.3222 6.3627 2.0392 21 7 -0.7481 6.3886 0.7941 22 14 -1.3981 7.0387 3.4085 23 1 -1.1944 8.5055 3.5197 24 1 -2.8238 6.7587 3.1018 25 1 -1.0312 6.3892 4.6926 26 6 3.5769 -0.6500 -0.0102 27 6 2.2299 -1.1103 -0.0058 28 8 1.8472 -2.2685 -0.0080 29 1 -0.3633 -0.0054 1.0276 30 1 -0.3634 0.8926 -0.5091 31 1 -0.3634 -0.8873 -0.5185 32 1 6.3625 3.4497 -0.0940 33 1 5.2451 4.5736 -0.9139 34 1 6.1816 5.6374 1.1135 35 1 5.5987 4.2780 2.1070 36 1 3.8303 6.0884 0.4067 37 1 4.0504 6.2444 2.1628 38 1 3.0696 4.8250 -1.2420 39 1 1.8784 3.4979 -1.4485 40 1 0.2836 4.5631 -0.1214 41 1 1.2078 6.0397 -0.5145 42 1 -1.6208 6.7584 0.5875 43 1 4.4812 -1.2405 -0.0157 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049445549.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:21 Heat of formation + Delta-G solvation = 40.316938 kcal Electronic energy + Delta-G solvation = -28936.401629 eV Core-core repulsion = 24987.233788 eV Total energy + Delta-G solvation = -3949.167841 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.26173 -41.80646 -39.77661 -39.35624 -36.69826 -35.51200 -34.09605 -34.01390 -33.40422 -30.85937 -30.07724 -28.96589 -26.63349 -26.19203 -24.82187 -24.09014 -23.28231 -21.99154 -21.66795 -20.30602 -19.56098 -19.12524 -18.61056 -18.31302 -17.51045 -16.73880 -16.42379 -16.38609 -16.30434 -15.99261 -15.52079 -15.13871 -15.05025 -14.97207 -14.78020 -14.37867 -14.21338 -14.18784 -13.78405 -13.66939 -13.46355 -13.12383 -12.74073 -12.67108 -12.38374 -12.31464 -12.05015 -11.98277 -11.78050 -11.55016 -11.51983 -11.39983 -11.12145 -11.09952 -10.64143 -9.83159 -9.66083 -8.86470 -7.83544 -5.15966 -0.63207 0.50378 1.34017 1.47431 1.49857 1.53325 1.58058 1.77386 2.13574 2.51169 3.06856 3.35411 3.53415 3.60001 3.75359 3.83637 3.87314 4.01825 4.08077 4.17877 4.22993 4.29297 4.37995 4.55007 4.57267 4.60661 4.65276 4.68421 4.73661 4.83544 4.91385 5.00588 5.05688 5.10609 5.34121 5.39139 5.48090 5.59409 5.67360 5.78881 5.98251 6.21441 6.40168 6.61960 6.85817 7.12845 7.78309 8.42478 9.26773 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012510 B = 0.005098 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.622881 B = 5490.659145 C = 7157.920659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.447 5.447 3 O 0.010 5.990 4 C 0.029 3.971 5 C 0.605 3.395 6 O -0.520 6.520 7 N -0.571 5.571 8 C 0.109 3.891 9 C -0.122 4.122 10 C -0.122 4.122 11 C 0.151 3.849 12 H 0.058 0.942 13 C 0.130 3.870 14 H 0.104 0.896 15 C -0.134 4.134 16 C 0.191 3.809 17 N -0.614 5.614 18 C -0.233 4.233 19 H 0.080 0.920 20 C -0.056 4.056 21 N -0.945 5.945 22 Si 0.965 3.035 23 H -0.291 1.291 24 H -0.296 1.296 25 H -0.271 1.271 26 C -0.236 4.236 27 C 0.470 3.530 28 O -0.565 6.565 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.020 0.980 41 H 0.009 0.991 42 H 0.246 0.754 43 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.132 -6.929 -3.220 11.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.208 5.208 3 O 0.000 6.000 4 C -0.029 4.029 5 C 0.389 3.611 6 O -0.397 6.397 7 N -0.301 5.301 8 C -0.011 4.011 9 C -0.160 4.160 10 C -0.162 4.162 11 C 0.044 3.956 12 H 0.076 0.924 13 C 0.025 3.975 14 H 0.121 0.879 15 C -0.173 4.173 16 C 0.066 3.934 17 N -0.339 5.339 18 C -0.362 4.362 19 H 0.098 0.902 20 C -0.249 4.249 21 N -0.594 5.594 22 Si 0.795 3.205 23 H -0.219 1.219 24 H -0.223 1.223 25 H -0.196 1.196 26 C -0.261 4.261 27 C 0.270 3.730 28 O -0.449 6.449 29 H 0.111 0.889 30 H 0.128 0.872 31 H 0.134 0.866 32 H 0.126 0.874 33 H 0.107 0.893 34 H 0.119 0.881 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.038 0.962 41 H 0.027 0.973 42 H 0.056 0.944 43 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 8.982 -7.375 -3.259 12.070 hybrid contribution -1.208 0.680 0.679 1.544 sum 7.773 -6.694 -2.580 10.578 Atomic orbital electron populations 1.22510 0.68799 1.06895 1.05859 1.46502 1.07115 0.99697 1.67484 1.84410 1.15344 1.20346 1.79944 1.23370 0.82021 0.96190 1.01361 1.16844 0.85206 0.81297 0.77747 1.90840 1.19139 1.78336 1.51376 1.47625 1.10682 1.05119 1.66681 1.21975 0.89703 0.90056 0.99344 1.21792 0.97193 0.99273 0.97776 1.21951 0.94391 0.98301 1.01560 1.21556 0.86544 0.91554 0.95946 0.92356 1.22032 0.81205 0.97960 0.96319 0.87934 1.22977 0.98621 0.98868 0.96845 1.20885 0.93798 0.95530 0.83228 1.44899 1.20610 1.62466 1.05935 1.19312 0.97512 1.28062 0.91269 0.90236 1.25449 0.98949 1.02338 0.98208 1.70146 1.19891 1.51872 1.17490 0.85263 0.78211 0.77749 0.79311 1.21856 1.22255 1.19633 1.23440 0.99636 0.93199 1.09778 1.18511 0.87326 0.85386 0.81823 1.90926 1.79736 1.17133 1.57149 0.88918 0.87210 0.86613 0.87443 0.89315 0.88096 0.91423 0.92700 0.93155 0.90204 0.90185 0.96192 0.97287 0.94434 0.77653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.79 11.22 127.77 1.43 3.23 16 2 N -0.45 -11.39 3.68 -492.75 -1.82 -13.21 16 3 O 0.01 0.26 7.55 70.44 0.53 0.79 16 4 C 0.03 0.75 6.82 24.47 0.17 0.92 16 5 C 0.60 15.69 7.66 86.89 0.67 16.36 16 6 O -0.52 -14.85 16.23 -3.70 -0.06 -14.91 16 7 N -0.57 -14.20 2.74 -798.26 -2.19 -16.39 16 8 C 0.11 2.25 6.15 86.33 0.53 2.78 16 9 C -0.12 -2.57 6.09 30.51 0.19 -2.38 16 10 C -0.12 -3.63 5.10 30.51 0.16 -3.47 16 11 C 0.15 5.24 3.60 45.08 0.16 5.40 16 12 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 13 C 0.13 3.81 2.67 46.14 0.12 3.94 16 14 H 0.10 3.14 4.38 -11.71 -0.05 3.09 16 15 C -0.13 -4.16 6.08 31.61 0.19 -3.97 16 16 C 0.19 8.25 5.19 86.79 0.45 8.70 16 17 N -0.61 -27.58 2.91 -667.07 -1.94 -29.52 16 18 C -0.23 -11.85 10.28 84.03 0.86 -10.99 16 19 H 0.08 3.93 7.84 -2.91 -0.02 3.91 16 20 C -0.06 -2.95 5.47 84.86 0.46 -2.48 16 21 N -0.95 -52.70 10.39 21.65 0.23 -52.47 16 22 Si 0.97 43.13 29.56 68.60 2.03 45.15 16 23 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 24 H -0.30 -13.41 7.11 99.48 0.71 -12.70 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 26 C -0.24 -6.02 10.94 22.84 0.25 -5.77 16 27 C 0.47 13.71 8.02 85.26 0.68 14.40 16 28 O -0.56 -19.83 17.84 -5.24 -0.09 -19.93 16 29 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.12 1.92 8.03 -2.39 -0.02 1.90 16 32 H 0.11 2.06 6.93 -2.39 -0.02 2.04 16 33 H 0.09 1.64 7.54 -2.39 -0.02 1.63 16 34 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.05 1.76 7.12 -2.38 -0.02 1.74 16 37 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.08 2.27 6.83 -2.38 -0.02 2.26 16 39 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.02 0.97 7.31 -2.39 -0.02 0.96 16 41 H 0.01 0.44 7.62 -2.39 -0.02 0.43 16 42 H 0.25 13.51 8.31 -92.70 -0.77 12.74 16 43 H 0.21 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -66.19 344.50 4.01 -62.18 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.99 Total: 11.65 kcal Atomic # 6 Polarization: 20.32 SS G_CDS: 6.33 Total: 26.65 kcal Atomic # 7 Polarization: -105.87 SS G_CDS: -5.72 Total: -111.59 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: 0.38 Total: -34.05 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -66.19 4.01 -62.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049445549.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.497 kcal (2) G-P(sol) polarization free energy of solvation -66.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds