Wall clock time and date at job start Tue Mar 31 2020 13:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 O 1.20927 * 124.57166 * 2 1 4 4 C 1.34166 * 112.19404 * 180.15397 * 3 2 1 5 5 C 1.48201 * 126.38852 * 179.78015 * 4 3 2 6 6 O 1.21492 * 120.00398 * 173.32443 * 5 4 3 7 7 N 1.34777 * 119.99778 * 353.33321 * 5 4 3 8 8 C 1.45729 * 117.76210 * 174.06411 * 7 5 4 9 9 C 1.53051 * 109.56042 * 141.10429 * 8 7 5 10 10 C 1.52941 * 108.49188 * 53.81142 * 9 8 7 11 11 C 1.52932 * 109.79108 * 294.00871 * 10 9 8 12 12 H 1.08996 * 111.26377 * 293.34981 * 11 10 9 13 13 C 1.44192 * 117.76128 * 354.05457 * 7 5 4 14 14 H 1.09006 * 108.69666 * 332.97512 * 13 7 5 15 15 C 1.54068 * 111.76508 * 93.51030 * 13 7 5 16 16 C 1.54058 * 103.74796 * 153.25051 * 15 13 7 17 17 N 1.46888 * 107.70669 * 342.88016 * 16 15 13 18 18 C 1.36926 * 125.58147 * 177.07059 * 17 16 15 19 19 H 1.08007 * 120.00274 * 179.97438 * 18 17 16 20 20 C 1.38814 * 120.00273 * 359.97043 * 18 17 16 21 21 N 1.31617 * 119.99751 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00075 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47362 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47158 * 120.00789 * 22 20 18 25 25 H 1.48503 * 109.47035 * 240.00258 * 22 20 18 26 26 C 1.36320 * 107.22682 * 359.52461 * 4 3 2 27 27 C 1.34834 * 124.56788 * 179.62551 * 2 1 3 28 28 O 1.21983 * 127.14157 * 0.05292 * 27 2 1 29 29 H 1.08998 * 109.46829 * 270.37710 * 1 2 3 30 30 H 1.09004 * 109.46760 * 30.37347 * 1 2 3 31 31 H 1.08990 * 109.47431 * 150.37666 * 1 2 3 32 32 H 1.09004 * 109.45947 * 21.07704 * 8 7 5 33 33 H 1.09003 * 109.44580 * 261.12135 * 8 7 5 34 34 H 1.08998 * 109.63410 * 294.11544 * 9 8 7 35 35 H 1.09000 * 109.64080 * 173.51389 * 9 8 7 36 36 H 1.08992 * 109.42214 * 173.90621 * 10 9 8 37 37 H 1.09001 * 109.36208 * 54.06794 * 10 9 8 38 38 H 1.08997 * 110.57808 * 271.82072 * 15 13 7 39 39 H 1.09007 * 110.57108 * 34.54209 * 15 13 7 40 40 H 1.09002 * 109.80851 * 102.42594 * 16 15 13 41 41 H 1.08993 * 109.81634 * 223.32981 * 16 15 13 42 42 H 0.97001 * 120.00089 * 179.97438 * 21 20 18 43 43 H 1.08005 * 127.98993 * 180.23345 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1512 0.9957 0.0000 4 6 3.4616 0.7081 -0.0033 5 6 4.5761 1.6850 -0.0089 6 8 5.7221 1.2999 0.1108 7 7 4.3183 3.0007 -0.1465 8 6 5.4340 3.9286 -0.0133 9 6 5.2892 5.0548 -1.0396 10 6 3.9047 5.6840 -0.8772 11 6 2.8265 4.6680 -1.2568 12 1 2.8643 4.4300 -2.3198 13 6 2.9574 3.3938 -0.4158 14 1 2.4513 2.5742 -0.9261 15 6 2.1935 3.7316 0.8789 16 6 1.1144 4.7295 0.4176 17 7 1.5134 5.2416 -0.9000 18 6 0.7871 6.1094 -1.6709 19 1 1.1682 6.4289 -2.6297 20 6 -0.4391 6.5786 -1.2203 21 7 -0.9034 6.1897 -0.0518 22 14 -1.4296 7.7631 -2.2717 23 1 -0.6929 8.0426 -3.5303 24 1 -2.7465 7.1569 -2.5935 25 1 -1.6372 9.0311 -1.5271 26 6 3.5769 -0.6501 0.0051 27 6 2.2300 -1.1103 0.0073 28 8 1.8472 -2.2685 0.0139 29 1 -0.3633 0.0068 1.0276 30 1 -0.3633 0.8867 -0.5196 31 1 -0.3634 -0.8932 -0.5079 32 1 6.3703 3.3980 -0.1864 33 1 5.4366 4.3512 0.9914 34 1 5.3911 4.6486 -2.0459 35 1 6.0568 5.8091 -0.8665 36 1 3.8247 6.5565 -1.5255 37 1 3.7658 5.9892 0.1600 38 1 1.7336 2.8363 1.2970 39 1 2.8598 4.1942 1.6071 40 1 0.1519 4.2236 0.3413 41 1 1.0445 5.5530 1.1282 42 1 -1.7602 6.5179 0.2634 43 1 4.4813 -1.2406 0.0089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049445553.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:28 Heat of formation + Delta-G solvation = 55.635373 kcal Electronic energy + Delta-G solvation = -29011.722303 eV Core-core repulsion = 25063.218719 eV Total energy + Delta-G solvation = -3948.503584 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.14301 -40.69077 -38.43074 -38.12645 -35.34980 -34.47990 -33.11810 -32.27544 -32.24790 -29.20681 -28.81565 -27.92099 -25.25536 -24.63912 -23.68038 -22.97407 -22.01139 -20.73938 -20.13563 -19.04519 -18.44841 -17.82674 -17.31973 -16.95823 -16.30081 -15.36493 -15.27620 -15.02109 -14.91598 -14.62228 -14.13543 -13.98644 -13.83893 -13.67003 -13.51481 -13.38883 -13.06564 -12.85433 -12.78008 -12.23074 -12.09790 -11.59742 -11.21908 -11.07373 -10.92324 -10.84228 -10.73936 -10.53373 -10.20010 -10.16971 -10.07153 -10.04715 -9.79257 -9.77934 -8.75282 -8.67275 -8.48933 -7.02490 -5.85747 -3.20782 0.47713 1.57000 2.49185 2.65680 2.90368 3.25738 3.30684 3.37293 3.39000 4.19892 4.38482 4.63978 4.86901 4.95308 5.04113 5.06625 5.08659 5.11532 5.16072 5.32983 5.37650 5.40519 5.45280 5.53295 5.68243 5.70164 5.86823 5.91546 5.97505 6.04514 6.09864 6.16713 6.31533 6.36792 6.54351 6.65187 6.87050 7.11028 7.41920 7.43914 7.55145 7.67699 7.75940 7.96600 8.09377 9.06509 9.65801 10.29105 11.25202 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013278 B = 0.005013 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.245828 B = 5584.306760 C = 7274.686017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.451 5.451 3 O 0.014 5.986 4 C 0.034 3.966 5 C 0.593 3.407 6 O -0.508 6.508 7 N -0.568 5.568 8 C 0.113 3.887 9 C -0.132 4.132 10 C -0.132 4.132 11 C 0.164 3.836 12 H 0.058 0.942 13 C 0.119 3.881 14 H 0.094 0.906 15 C -0.152 4.152 16 C 0.181 3.819 17 N -0.595 5.595 18 C -0.229 4.229 19 H 0.080 0.920 20 C -0.004 4.004 21 N -0.920 5.920 22 Si 0.911 3.089 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 C -0.244 4.244 27 C 0.479 3.521 28 O -0.531 6.531 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.043 0.957 42 H 0.253 0.747 43 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.861 -6.577 0.889 10.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.214 5.214 3 O 0.004 5.996 4 C -0.025 4.025 5 C 0.377 3.623 6 O -0.385 6.385 7 N -0.298 5.298 8 C -0.009 4.009 9 C -0.171 4.171 10 C -0.172 4.172 11 C 0.056 3.944 12 H 0.076 0.924 13 C 0.015 3.985 14 H 0.111 0.889 15 C -0.192 4.192 16 C 0.056 3.944 17 N -0.319 5.319 18 C -0.357 4.357 19 H 0.097 0.903 20 C -0.200 4.200 21 N -0.567 5.567 22 Si 0.742 3.258 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.217 1.217 26 C -0.269 4.269 27 C 0.277 3.723 28 O -0.413 6.413 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 7.678 -7.006 0.963 10.439 hybrid contribution -0.675 0.743 -0.385 1.075 sum 7.004 -6.263 0.578 9.413 Atomic orbital electron populations 1.22204 0.70448 1.05952 1.04693 1.46243 1.06236 1.00124 1.68764 1.84485 1.15033 1.20120 1.79999 1.23359 0.82182 0.96119 1.00827 1.17015 0.85451 0.81614 0.78264 1.90834 1.18654 1.78405 1.50582 1.47145 1.09976 1.05106 1.67606 1.21524 0.88804 0.90612 0.99932 1.21868 0.99125 0.97166 0.98905 1.22134 0.92848 0.99672 1.02532 1.20874 0.87830 0.89567 0.96175 0.92386 1.21669 0.79160 0.99518 0.98201 0.88873 1.23105 0.99237 1.00676 0.96156 1.21055 0.93258 0.93415 0.86693 1.44505 1.16649 1.52521 1.18235 1.19053 0.98993 1.18191 0.99434 0.90259 1.24784 0.97695 1.00382 0.97188 1.69957 1.20340 1.47403 1.19024 0.86057 0.80015 0.80438 0.79302 1.20463 1.21715 1.21705 1.23251 0.99676 0.93207 1.10774 1.18325 0.86642 0.85562 0.81731 1.90947 1.79112 1.15942 1.55272 0.89966 0.88119 0.87792 0.88839 0.91267 0.91514 0.90635 0.91482 0.91748 0.91790 0.92012 0.92851 0.93927 0.93681 0.79213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.06 11.22 59.85 0.67 1.73 16 2 N -0.45 -6.06 3.68 -69.78 -0.26 -6.31 16 3 O 0.01 0.19 6.10 16.84 0.10 0.30 16 4 C 0.03 0.47 6.70 -36.18 -0.24 0.23 16 5 C 0.59 8.51 7.59 -12.17 -0.09 8.41 16 6 O -0.51 -8.01 16.11 5.37 0.09 -7.92 16 7 N -0.57 -7.92 2.80 -168.55 -0.47 -8.39 16 8 C 0.11 1.38 6.29 -4.43 -0.03 1.35 16 9 C -0.13 -1.59 6.10 -26.74 -0.16 -1.75 16 10 C -0.13 -2.06 5.31 -26.80 -0.14 -2.20 16 11 C 0.16 2.92 3.29 -67.21 -0.22 2.70 16 12 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 13 C 0.12 1.86 2.28 -68.48 -0.16 1.70 16 14 H 0.09 1.49 5.06 -51.93 -0.26 1.22 16 15 C -0.15 -2.53 6.20 -25.62 -0.16 -2.69 16 16 C 0.18 3.88 5.39 -3.28 -0.02 3.86 16 17 N -0.59 -13.26 2.94 -163.74 -0.48 -13.74 16 18 C -0.23 -5.75 10.27 -15.06 -0.15 -5.90 16 19 H 0.08 1.94 7.83 -52.48 -0.41 1.53 16 20 C 0.00 -0.10 5.49 -17.43 -0.10 -0.20 16 21 N -0.92 -24.90 10.29 55.49 0.57 -24.33 16 22 Si 0.91 20.70 29.55 -169.99 -5.02 15.67 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 26 C -0.24 -3.33 10.94 -38.70 -0.42 -3.75 16 27 C 0.48 7.24 8.02 -14.66 -0.12 7.13 16 28 O -0.53 -9.47 17.84 4.93 0.09 -9.38 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.10 0.95 8.03 -51.93 -0.42 0.54 16 32 H 0.09 1.10 6.90 -51.93 -0.36 0.74 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 1.09 8.02 -51.93 -0.42 0.67 16 38 H 0.06 1.00 6.76 -51.93 -0.35 0.64 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 1.27 7.25 -51.93 -0.38 0.90 16 41 H 0.04 1.04 7.60 -51.93 -0.39 0.64 16 42 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 43 H 0.19 2.26 8.06 -52.48 -0.42 1.84 16 LS Contribution 344.67 15.07 5.19 5.19 Total: -1.00 -30.26 344.67 -7.46 -37.72 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -5.93 Total: 0.58 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: -1.34 Total: 10.61 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.64 Total: -52.78 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: 0.28 Total: -17.01 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.26 -7.46 -37.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049445553.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.358 kcal (2) G-P(sol) polarization free energy of solvation -30.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds