Wall clock time and date at job start Tue Mar 31 2020 13:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 O 1.20927 * 124.57166 * 2 1 4 4 C 1.34166 * 112.19404 * 180.15397 * 3 2 1 5 5 C 1.48201 * 126.38852 * 179.78015 * 4 3 2 6 6 O 1.21492 * 120.00398 * 173.32443 * 5 4 3 7 7 N 1.34777 * 119.99778 * 353.33321 * 5 4 3 8 8 C 1.45729 * 117.76210 * 174.06411 * 7 5 4 9 9 C 1.53051 * 109.56042 * 141.10429 * 8 7 5 10 10 C 1.52941 * 108.49188 * 53.81142 * 9 8 7 11 11 C 1.52932 * 109.79108 * 294.00871 * 10 9 8 12 12 H 1.08996 * 111.26377 * 293.34981 * 11 10 9 13 13 C 1.44192 * 117.76128 * 354.05457 * 7 5 4 14 14 H 1.09006 * 108.69666 * 332.97512 * 13 7 5 15 15 C 1.54068 * 111.76508 * 93.51030 * 13 7 5 16 16 C 1.54058 * 103.74796 * 153.25051 * 15 13 7 17 17 N 1.46888 * 107.70669 * 342.88016 * 16 15 13 18 18 C 1.36926 * 125.58147 * 177.07059 * 17 16 15 19 19 H 1.08007 * 120.00274 * 179.97438 * 18 17 16 20 20 C 1.38814 * 120.00273 * 359.97043 * 18 17 16 21 21 N 1.31617 * 119.99751 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00075 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47362 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47158 * 120.00789 * 22 20 18 25 25 H 1.48503 * 109.47035 * 240.00258 * 22 20 18 26 26 C 1.36320 * 107.22682 * 359.52461 * 4 3 2 27 27 C 1.34834 * 124.56788 * 179.62551 * 2 1 3 28 28 O 1.21983 * 127.14157 * 0.05292 * 27 2 1 29 29 H 1.08998 * 109.46829 * 270.37710 * 1 2 3 30 30 H 1.09004 * 109.46760 * 30.37347 * 1 2 3 31 31 H 1.08990 * 109.47431 * 150.37666 * 1 2 3 32 32 H 1.09004 * 109.45947 * 21.07704 * 8 7 5 33 33 H 1.09003 * 109.44580 * 261.12135 * 8 7 5 34 34 H 1.08998 * 109.63410 * 294.11544 * 9 8 7 35 35 H 1.09000 * 109.64080 * 173.51389 * 9 8 7 36 36 H 1.08992 * 109.42214 * 173.90621 * 10 9 8 37 37 H 1.09001 * 109.36208 * 54.06794 * 10 9 8 38 38 H 1.08997 * 110.57808 * 271.82072 * 15 13 7 39 39 H 1.09007 * 110.57108 * 34.54209 * 15 13 7 40 40 H 1.09002 * 109.80851 * 102.42594 * 16 15 13 41 41 H 1.08993 * 109.81634 * 223.32981 * 16 15 13 42 42 H 0.97001 * 120.00089 * 179.97438 * 21 20 18 43 43 H 1.08005 * 127.98993 * 180.23345 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1512 0.9957 0.0000 4 6 3.4616 0.7081 -0.0033 5 6 4.5761 1.6850 -0.0089 6 8 5.7221 1.2999 0.1108 7 7 4.3183 3.0007 -0.1465 8 6 5.4340 3.9286 -0.0133 9 6 5.2892 5.0548 -1.0396 10 6 3.9047 5.6840 -0.8772 11 6 2.8265 4.6680 -1.2568 12 1 2.8643 4.4300 -2.3198 13 6 2.9574 3.3938 -0.4158 14 1 2.4513 2.5742 -0.9261 15 6 2.1935 3.7316 0.8789 16 6 1.1144 4.7295 0.4176 17 7 1.5134 5.2416 -0.9000 18 6 0.7871 6.1094 -1.6709 19 1 1.1682 6.4289 -2.6297 20 6 -0.4391 6.5786 -1.2203 21 7 -0.9034 6.1897 -0.0518 22 14 -1.4296 7.7631 -2.2717 23 1 -0.6929 8.0426 -3.5303 24 1 -2.7465 7.1569 -2.5935 25 1 -1.6372 9.0311 -1.5271 26 6 3.5769 -0.6501 0.0051 27 6 2.2300 -1.1103 0.0073 28 8 1.8472 -2.2685 0.0139 29 1 -0.3633 0.0068 1.0276 30 1 -0.3633 0.8867 -0.5196 31 1 -0.3634 -0.8932 -0.5079 32 1 6.3703 3.3980 -0.1864 33 1 5.4366 4.3512 0.9914 34 1 5.3911 4.6486 -2.0459 35 1 6.0568 5.8091 -0.8665 36 1 3.8247 6.5565 -1.5255 37 1 3.7658 5.9892 0.1600 38 1 1.7336 2.8363 1.2970 39 1 2.8598 4.1942 1.6071 40 1 0.1519 4.2236 0.3413 41 1 1.0445 5.5530 1.1282 42 1 -1.7602 6.5179 0.2634 43 1 4.4813 -1.2406 0.0089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049445553.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:27 Heat of formation + Delta-G solvation = 37.486004 kcal Electronic energy + Delta-G solvation = -29012.509319 eV Core-core repulsion = 25063.218719 eV Total energy + Delta-G solvation = -3949.290600 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.26283 -41.90728 -39.76709 -39.34235 -36.78076 -35.55050 -34.29518 -34.03031 -33.39278 -30.84105 -30.16784 -29.00760 -26.54768 -26.28756 -24.82231 -24.12781 -23.25398 -22.15976 -21.60841 -20.19785 -19.56555 -19.16555 -18.62220 -18.35247 -17.50093 -16.75892 -16.51361 -16.40340 -16.28058 -16.01063 -15.53866 -15.18179 -15.05754 -14.96302 -14.73071 -14.42279 -14.22895 -14.18973 -13.83770 -13.69280 -13.49280 -13.12772 -12.80912 -12.67510 -12.38158 -12.34186 -12.01200 -11.95477 -11.77050 -11.54034 -11.51123 -11.39692 -11.15583 -11.08725 -10.67200 -9.85916 -9.63630 -8.87653 -7.81909 -5.16891 -0.63320 0.52488 1.33610 1.48371 1.50095 1.54368 1.59212 1.76802 2.13145 2.51145 3.06814 3.36166 3.54260 3.60793 3.69797 3.81743 3.87650 3.99011 4.07952 4.15178 4.23387 4.30186 4.36794 4.55913 4.58476 4.61329 4.64471 4.69088 4.74272 4.82461 4.86042 5.01097 5.05605 5.12083 5.34329 5.40244 5.48340 5.58320 5.66748 5.79705 5.93159 6.22519 6.40706 6.62047 6.84943 7.13625 7.79249 8.41657 9.27741 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013278 B = 0.005013 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.245828 B = 5584.306760 C = 7274.686017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.446 5.446 3 O 0.013 5.987 4 C 0.028 3.972 5 C 0.600 3.400 6 O -0.518 6.518 7 N -0.566 5.566 8 C 0.109 3.891 9 C -0.119 4.119 10 C -0.124 4.124 11 C 0.158 3.842 12 H 0.057 0.943 13 C 0.137 3.863 14 H 0.094 0.906 15 C -0.136 4.136 16 C 0.193 3.807 17 N -0.612 5.612 18 C -0.230 4.230 19 H 0.083 0.917 20 C -0.058 4.058 21 N -0.948 5.948 22 Si 0.969 3.031 23 H -0.267 1.267 24 H -0.295 1.295 25 H -0.297 1.297 26 C -0.235 4.235 27 C 0.470 3.530 28 O -0.565 6.565 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.114 0.886 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.103 0.897 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.023 0.977 41 H 0.006 0.994 42 H 0.246 0.754 43 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.611 -6.780 0.421 11.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.207 5.207 3 O 0.002 5.998 4 C -0.031 4.031 5 C 0.385 3.615 6 O -0.395 6.395 7 N -0.295 5.295 8 C -0.011 4.011 9 C -0.158 4.158 10 C -0.164 4.164 11 C 0.050 3.950 12 H 0.075 0.925 13 C 0.031 3.969 14 H 0.111 0.889 15 C -0.175 4.175 16 C 0.067 3.933 17 N -0.337 5.337 18 C -0.359 4.359 19 H 0.101 0.899 20 C -0.252 4.252 21 N -0.597 5.597 22 Si 0.798 3.202 23 H -0.192 1.192 24 H -0.222 1.222 25 H -0.224 1.224 26 C -0.260 4.260 27 C 0.269 3.731 28 O -0.450 6.450 29 H 0.116 0.884 30 H 0.123 0.877 31 H 0.133 0.867 32 H 0.124 0.876 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.121 0.879 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.041 0.959 41 H 0.024 0.976 42 H 0.055 0.945 43 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 9.466 -7.195 0.476 11.899 hybrid contribution -1.202 0.824 -0.257 1.479 sum 8.265 -6.371 0.219 10.437 Atomic orbital electron populations 1.22506 0.68792 1.06678 1.06038 1.46478 1.07079 0.99682 1.67418 1.84471 1.15270 1.20316 1.79791 1.23316 0.82094 0.96149 1.01505 1.16914 0.85255 0.81509 0.77847 1.90837 1.19067 1.78478 1.51120 1.47104 1.09524 1.05403 1.67519 1.21721 0.88479 0.90358 1.00567 1.21803 0.97155 0.97528 0.99277 1.21953 0.94467 0.98696 1.01239 1.21086 0.86425 0.90879 0.96565 0.92456 1.21304 0.80187 0.98440 0.96926 0.88897 1.22902 0.98007 0.99792 0.96797 1.20732 0.93761 0.92880 0.85896 1.44700 1.18297 1.52364 1.18309 1.19364 0.99035 1.17844 0.99611 0.89941 1.25471 0.98979 1.02372 0.98346 1.70147 1.20323 1.48768 1.20463 0.85149 0.78482 0.78226 0.78314 1.19152 1.22220 1.22423 1.23435 0.99635 0.93177 1.09751 1.18511 0.87310 0.85385 0.81857 1.90927 1.79720 1.17138 1.57170 0.88353 0.87718 0.86736 0.87609 0.90241 0.90916 0.87895 0.92696 0.93068 0.90443 0.91043 0.95889 0.97604 0.94491 0.77641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.83 11.22 127.77 1.43 3.27 16 2 N -0.45 -11.38 3.68 -492.75 -1.82 -13.19 16 3 O 0.01 0.33 6.10 70.43 0.43 0.76 16 4 C 0.03 0.72 6.70 24.47 0.16 0.89 16 5 C 0.60 15.60 7.59 86.89 0.66 16.26 16 6 O -0.52 -14.76 16.11 -3.69 -0.06 -14.82 16 7 N -0.57 -14.23 2.80 -805.47 -2.25 -16.48 16 8 C 0.11 2.29 6.29 86.54 0.54 2.83 16 9 C -0.12 -2.47 6.10 30.59 0.19 -2.28 16 10 C -0.12 -3.67 5.31 30.55 0.16 -3.51 16 11 C 0.16 5.43 3.29 44.82 0.15 5.58 16 12 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 13 C 0.14 4.03 2.28 45.86 0.10 4.14 16 14 H 0.09 2.80 5.06 -2.38 -0.01 2.79 16 15 C -0.14 -4.37 6.20 31.31 0.19 -4.17 16 16 C 0.19 8.44 5.39 86.66 0.47 8.90 16 17 N -0.61 -27.47 2.94 -671.95 -1.97 -29.44 16 18 C -0.23 -11.61 10.27 84.04 0.86 -10.75 16 19 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 20 C -0.06 -3.07 5.49 84.86 0.47 -2.61 16 21 N -0.95 -52.88 10.29 21.65 0.22 -52.66 16 22 Si 0.97 43.02 29.55 68.60 2.03 45.05 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 24 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 25 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 26 C -0.24 -5.98 10.94 22.84 0.25 -5.73 16 27 C 0.47 13.66 8.02 85.25 0.68 14.35 16 28 O -0.56 -19.80 17.84 -5.26 -0.09 -19.89 16 29 H 0.10 1.60 8.14 -2.39 -0.02 1.59 16 30 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.11 1.98 8.03 -2.39 -0.02 1.96 16 32 H 0.11 2.07 6.90 -2.38 -0.02 2.05 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.05 1.66 8.02 -2.39 -0.02 1.64 16 38 H 0.08 2.30 6.76 -2.39 -0.02 2.28 16 39 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 40 H 0.02 1.13 7.25 -2.39 -0.02 1.11 16 41 H 0.01 0.29 7.60 -2.39 -0.02 0.27 16 42 H 0.25 13.48 8.31 -92.71 -0.77 12.71 16 43 H 0.21 4.45 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -65.74 344.67 3.84 -61.90 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 1.03 Total: 11.61 kcal Atomic # 6 Polarization: 20.84 SS G_CDS: 6.33 Total: 27.17 kcal Atomic # 7 Polarization: -105.96 SS G_CDS: -5.82 Total: -111.78 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: 0.28 Total: -33.95 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -65.74 3.84 -61.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049445553.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.390 kcal (2) G-P(sol) polarization free energy of solvation -65.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds