Wall clock time and date at job start Tue Mar 31 2020 13:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35350 * 117.00040 * 2 1 4 4 N 1.30552 * 125.44337 * 179.97438 * 3 2 1 5 5 C 1.36332 * 108.38128 * 179.97438 * 4 3 2 6 6 C 1.47372 * 126.41502 * 180.02562 * 5 4 3 7 7 O 1.21622 * 120.00279 * 174.39285 * 6 5 4 8 8 N 1.34771 * 119.99469 * 354.39716 * 6 5 4 9 9 C 1.47847 * 122.23531 * 5.53116 * 8 6 5 10 10 C 1.52718 * 111.06322 * 232.49186 * 9 8 6 11 11 C 1.53865 * 111.52700 * 311.46852 * 10 9 8 12 12 C 1.51082 * 107.33934 * 56.92198 * 11 10 9 13 13 H 1.09001 * 108.73591 * 51.47355 * 12 11 10 14 14 C 1.45730 * 122.22500 * 185.24918 * 8 6 5 15 15 H 1.08997 * 111.07419 * 240.50937 * 14 8 6 16 16 C 1.53425 * 116.37804 * 9.88495 * 14 8 6 17 17 C 1.55473 * 101.67501 * 152.72284 * 16 14 8 18 18 N 1.45029 * 119.18991 * 176.11068 * 12 11 10 19 19 C 1.36944 * 126.55588 * 331.17997 * 18 12 11 20 20 H 1.07995 * 120.00448 * 359.97438 * 19 18 12 21 21 C 1.38815 * 119.99479 * 179.97438 * 19 18 12 22 22 N 1.31621 * 120.00284 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99806 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47167 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46918 * 120.00046 * 23 21 19 26 26 H 1.48502 * 109.46857 * 239.99707 * 23 21 19 27 27 C 1.35915 * 107.17440 * 359.97438 * 5 4 3 28 28 O 1.34199 * 125.44743 * 359.95687 * 3 2 1 29 29 H 1.08997 * 109.47336 * 300.00399 * 1 2 3 30 30 H 1.09000 * 109.46568 * 60.00216 * 1 2 3 31 31 H 1.08998 * 109.47101 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.16105 * 352.90095 * 9 8 6 33 33 H 1.08997 * 109.16161 * 112.13718 * 9 8 6 34 34 H 1.09001 * 109.06775 * 71.99984 * 10 9 8 35 35 H 1.08997 * 109.06684 * 191.01025 * 10 9 8 36 36 H 1.09002 * 109.88547 * 176.38136 * 11 10 9 37 37 H 1.08999 * 109.88642 * 297.39245 * 11 10 9 38 38 H 1.08999 * 110.99015 * 270.82111 * 16 14 8 39 39 H 1.09005 * 110.98906 * 34.59167 * 16 14 8 40 40 H 1.08995 * 109.95823 * 96.78272 * 17 16 14 41 41 H 1.09002 * 109.96029 * 218.01970 * 17 16 14 42 42 H 0.96999 * 119.99960 * 179.97438 * 22 21 19 43 43 H 1.08002 * 126.45714 * 179.73921 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 7 3.3349 1.3977 0.0005 5 6 3.5702 2.7405 -0.0003 6 6 4.8893 3.3976 -0.0006 7 8 4.9664 4.6069 -0.1042 8 7 6.0103 2.6582 0.1138 9 6 5.9826 1.1800 0.1221 10 6 6.7265 0.6239 1.3344 11 6 8.1082 1.2807 1.4990 12 6 7.8884 2.7718 1.6036 13 1 7.1391 2.9621 2.3720 14 6 7.3312 3.2625 0.2315 15 1 7.9758 2.9593 -0.5934 16 6 7.3691 4.7800 0.4545 17 6 8.7141 4.9527 1.2150 18 7 9.0243 3.6385 1.8522 19 6 10.1679 3.3100 2.5303 20 1 10.2859 2.3185 2.9418 21 6 11.1755 4.2516 2.6886 22 7 11.0320 5.4599 2.1866 23 14 12.7352 3.8039 3.6140 24 1 12.6496 2.3952 4.0759 25 1 13.9065 3.9603 2.7147 26 1 12.8890 4.7007 4.7877 27 6 2.3604 3.3599 -0.0018 28 8 1.4228 2.3958 -0.0008 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 4.9468 0.8417 0.1518 33 1 6.4542 0.8082 -0.7875 34 1 6.1350 0.8092 2.2310 35 1 6.8569 -0.4510 1.2098 36 1 8.5882 0.9122 2.4057 37 1 8.7308 1.0566 0.6329 38 1 7.3864 5.3140 -0.4955 39 1 6.5287 5.1056 1.0677 40 1 9.5031 5.2316 0.5167 41 1 8.6107 5.7174 1.9848 42 1 11.7360 6.1179 2.2976 43 1 2.1850 4.4256 0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049621122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:42 Heat of formation + Delta-G solvation = 15.612631 kcal Electronic energy + Delta-G solvation = -28065.628675 eV Core-core repulsion = 24115.389575 eV Total energy + Delta-G solvation = -3950.239101 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.70959 -40.14486 -39.16616 -37.65508 -35.60938 -34.81800 -32.53085 -32.03444 -30.36964 -28.86002 -28.04726 -27.83136 -25.38306 -24.38754 -23.26613 -22.78779 -21.31292 -20.91090 -19.91345 -19.40796 -18.30599 -17.80117 -17.01515 -16.68909 -16.28558 -15.68650 -15.55429 -15.37020 -14.96344 -14.62014 -14.16456 -14.04067 -13.66193 -13.61205 -13.27906 -12.88435 -12.72941 -12.37959 -12.35068 -12.14112 -11.80690 -11.64320 -11.28079 -11.25450 -10.85364 -10.79911 -10.57332 -10.36937 -10.07468 -9.97885 -9.78289 -9.68419 -9.53154 -9.17953 -8.94435 -8.55304 -8.11604 -6.76265 -5.64476 -2.97804 0.95419 1.60075 1.84582 2.45811 3.15342 3.38659 3.44257 3.49490 3.51996 4.20695 4.44075 4.52547 4.55439 4.67212 4.79080 4.94154 5.09357 5.24710 5.35212 5.43038 5.49076 5.56671 5.63977 5.73797 5.83990 5.93309 6.09985 6.17043 6.22057 6.32858 6.42615 6.52972 6.61671 6.68632 6.82385 6.86970 6.96436 7.23894 7.26759 7.63884 7.69664 7.76968 7.89433 8.29101 8.36977 9.24341 9.88914 10.57968 11.48146 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.027777 B = 0.003188 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.775865 B = 8781.348001 C = 9504.865211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.245 6.245 3 C 0.378 3.622 4 N -0.452 5.452 5 C -0.035 4.035 6 C 0.598 3.402 7 O -0.529 6.529 8 N -0.577 5.577 9 C 0.072 3.928 10 C -0.124 4.124 11 C -0.118 4.118 12 C 0.160 3.840 13 H 0.018 0.982 14 C 0.115 3.885 15 H 0.082 0.918 16 C -0.128 4.128 17 C 0.173 3.827 18 N -0.595 5.595 19 C -0.222 4.222 20 H 0.079 0.921 21 C -0.009 4.009 22 N -0.921 5.921 23 Si 0.909 3.091 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.001 4.001 28 O -0.226 6.226 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.119 0.881 32 H 0.141 0.859 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.057 0.943 41 H 0.041 0.959 42 H 0.251 0.749 43 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.620 -10.292 -6.177 25.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.153 6.153 3 C 0.133 3.867 4 N -0.198 5.198 5 C -0.154 4.154 6 C 0.384 3.616 7 O -0.406 6.406 8 N -0.307 5.307 9 C -0.050 4.050 10 C -0.163 4.163 11 C -0.156 4.156 12 C 0.051 3.949 13 H 0.035 0.965 14 C 0.011 3.989 15 H 0.100 0.900 16 C -0.167 4.167 17 C 0.048 3.952 18 N -0.320 5.320 19 C -0.350 4.350 20 H 0.097 0.903 21 C -0.205 4.205 22 N -0.568 5.568 23 Si 0.740 3.260 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.219 1.219 27 C -0.073 4.073 28 O -0.117 6.117 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.137 0.863 32 H 0.158 0.842 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -21.953 -10.271 -6.145 25.004 hybrid contribution 0.194 0.221 0.495 0.576 sum -21.759 -10.050 -5.651 24.625 Atomic orbital electron populations 1.23301 0.75169 1.05635 1.03020 1.86389 1.23639 1.16021 1.89220 1.23742 0.85901 0.79516 0.97534 1.70902 1.08568 1.15697 1.24619 1.21939 0.96230 0.87973 1.09220 1.16673 0.81451 0.85756 0.77700 1.90844 1.85924 1.12747 1.51129 1.47829 1.05819 1.07581 1.69476 1.22732 1.06159 0.78154 0.97927 1.21851 0.96637 0.99597 0.98240 1.21472 0.95653 0.96401 1.02092 1.20853 0.90771 0.90478 0.92805 0.96467 1.22606 0.80974 0.96181 0.99178 0.89963 1.22918 1.00165 0.92551 1.01051 1.21897 0.90920 0.87361 0.94984 1.44356 1.15905 1.08551 1.63150 1.19052 0.92218 0.97261 1.26518 0.90311 1.24797 0.98585 0.96010 1.01141 1.69954 1.33352 1.03792 1.49729 0.86076 0.83375 0.77430 0.79083 1.20558 1.21837 1.21853 1.24944 0.84758 0.93734 1.03882 1.84375 1.39555 1.15832 1.71976 0.91375 0.91417 0.86322 0.84206 0.92255 0.92186 0.91140 0.91669 0.91893 0.91816 0.90425 0.92516 0.94085 0.93835 0.74707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 10.73 101.05 1.08 1.18 16 2 O -0.25 -2.13 10.55 -40.97 -0.43 -2.57 16 3 C 0.38 4.11 8.98 52.22 0.47 4.58 16 4 N -0.45 -5.96 7.82 -11.71 -0.09 -6.05 16 5 C -0.04 -0.49 6.78 -82.98 -0.56 -1.05 16 6 C 0.60 10.18 7.63 -12.55 -0.10 10.09 16 7 O -0.53 -10.06 13.88 5.26 0.07 -9.99 16 8 N -0.58 -10.03 2.90 -164.94 -0.48 -10.51 16 9 C 0.07 1.08 6.30 -3.45 -0.02 1.05 16 10 C -0.12 -1.85 5.93 -26.43 -0.16 -2.01 16 11 C -0.12 -2.17 5.45 -27.25 -0.15 -2.32 16 12 C 0.16 3.50 2.59 -68.07 -0.18 3.32 16 13 H 0.02 0.42 8.06 -51.93 -0.42 0.00 16 14 C 0.11 2.30 3.33 -66.51 -0.22 2.07 16 15 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 16 C -0.13 -2.77 4.94 -25.20 -0.12 -2.90 16 17 C 0.17 4.42 5.49 -1.16 -0.01 4.42 16 18 N -0.59 -15.62 3.38 -162.18 -0.55 -16.17 16 19 C -0.22 -6.25 9.95 -15.05 -0.15 -6.40 16 20 H 0.08 2.14 7.31 -52.49 -0.38 1.75 16 21 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 22 N -0.92 -27.61 10.47 55.49 0.58 -27.03 16 23 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 C 0.00 -0.01 11.94 29.90 0.36 0.34 16 28 O -0.23 -2.20 10.20 -17.75 -0.18 -2.38 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.12 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.14 2.00 3.85 -67.54 -0.26 1.74 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 1.24 7.70 -51.93 -0.40 0.84 16 37 H 0.06 1.16 8.12 -51.93 -0.42 0.74 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.08 1.73 6.38 -51.93 -0.33 1.40 16 40 H 0.06 1.57 7.23 -51.93 -0.38 1.20 16 41 H 0.04 1.15 7.80 -51.93 -0.40 0.74 16 42 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.24 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 343.53 15.07 5.18 5.18 Total: -1.00 -33.75 343.53 -6.71 -40.46 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -5.93 Total: -0.39 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: 0.15 Total: 12.02 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: -0.54 Total: -59.77 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.54 Total: -14.93 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.75 -6.71 -40.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049621122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.073 kcal (2) G-P(sol) polarization free energy of solvation -33.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds