Wall clock time and date at job start Tue Mar 31 2020 13:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35350 * 117.00040 * 2 1 4 4 N 1.30552 * 125.44337 * 179.97438 * 3 2 1 5 5 C 1.36332 * 108.38128 * 179.97438 * 4 3 2 6 6 C 1.47372 * 126.41502 * 180.02562 * 5 4 3 7 7 O 1.21622 * 120.00279 * 174.39285 * 6 5 4 8 8 N 1.34771 * 119.99469 * 354.39716 * 6 5 4 9 9 C 1.47847 * 122.23531 * 5.53116 * 8 6 5 10 10 C 1.52718 * 111.06322 * 232.49186 * 9 8 6 11 11 C 1.53865 * 111.52700 * 311.46852 * 10 9 8 12 12 C 1.51082 * 107.33934 * 56.92198 * 11 10 9 13 13 H 1.09001 * 108.73591 * 51.47355 * 12 11 10 14 14 C 1.45730 * 122.22500 * 185.24918 * 8 6 5 15 15 H 1.08997 * 111.07419 * 240.50937 * 14 8 6 16 16 C 1.53425 * 116.37804 * 9.88495 * 14 8 6 17 17 C 1.55473 * 101.67501 * 152.72284 * 16 14 8 18 18 N 1.45029 * 119.18991 * 176.11068 * 12 11 10 19 19 C 1.36944 * 126.55588 * 331.17997 * 18 12 11 20 20 H 1.07995 * 120.00448 * 359.97438 * 19 18 12 21 21 C 1.38815 * 119.99479 * 179.97438 * 19 18 12 22 22 N 1.31621 * 120.00284 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99806 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47167 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46918 * 120.00046 * 23 21 19 26 26 H 1.48502 * 109.46857 * 239.99707 * 23 21 19 27 27 C 1.35915 * 107.17440 * 359.97438 * 5 4 3 28 28 O 1.34199 * 125.44743 * 359.95687 * 3 2 1 29 29 H 1.08997 * 109.47336 * 300.00399 * 1 2 3 30 30 H 1.09000 * 109.46568 * 60.00216 * 1 2 3 31 31 H 1.08998 * 109.47101 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.16105 * 352.90095 * 9 8 6 33 33 H 1.08997 * 109.16161 * 112.13718 * 9 8 6 34 34 H 1.09001 * 109.06775 * 71.99984 * 10 9 8 35 35 H 1.08997 * 109.06684 * 191.01025 * 10 9 8 36 36 H 1.09002 * 109.88547 * 176.38136 * 11 10 9 37 37 H 1.08999 * 109.88642 * 297.39245 * 11 10 9 38 38 H 1.08999 * 110.99015 * 270.82111 * 16 14 8 39 39 H 1.09005 * 110.98906 * 34.59167 * 16 14 8 40 40 H 1.08995 * 109.95823 * 96.78272 * 17 16 14 41 41 H 1.09002 * 109.96029 * 218.01970 * 17 16 14 42 42 H 0.96999 * 119.99960 * 179.97438 * 22 21 19 43 43 H 1.08002 * 126.45714 * 179.73921 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 7 3.3349 1.3977 0.0005 5 6 3.5702 2.7405 -0.0003 6 6 4.8893 3.3976 -0.0006 7 8 4.9664 4.6069 -0.1042 8 7 6.0103 2.6582 0.1138 9 6 5.9826 1.1800 0.1221 10 6 6.7265 0.6239 1.3344 11 6 8.1082 1.2807 1.4990 12 6 7.8884 2.7718 1.6036 13 1 7.1391 2.9621 2.3720 14 6 7.3312 3.2625 0.2315 15 1 7.9758 2.9593 -0.5934 16 6 7.3691 4.7800 0.4545 17 6 8.7141 4.9527 1.2150 18 7 9.0243 3.6385 1.8522 19 6 10.1679 3.3100 2.5303 20 1 10.2859 2.3185 2.9418 21 6 11.1755 4.2516 2.6886 22 7 11.0320 5.4599 2.1866 23 14 12.7352 3.8039 3.6140 24 1 12.6496 2.3952 4.0759 25 1 13.9065 3.9603 2.7147 26 1 12.8890 4.7007 4.7877 27 6 2.3604 3.3599 -0.0018 28 8 1.4228 2.3958 -0.0008 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 4.9468 0.8417 0.1518 33 1 6.4542 0.8082 -0.7875 34 1 6.1350 0.8092 2.2310 35 1 6.8569 -0.4510 1.2098 36 1 8.5882 0.9122 2.4057 37 1 8.7308 1.0566 0.6329 38 1 7.3864 5.3140 -0.4955 39 1 6.5287 5.1056 1.0677 40 1 9.5031 5.2316 0.5167 41 1 8.6107 5.7174 1.9848 42 1 11.7360 6.1179 2.2976 43 1 2.1850 4.4256 0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049621122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:41 Heat of formation + Delta-G solvation = -9.070591 kcal Electronic energy + Delta-G solvation = -28066.699020 eV Core-core repulsion = 24115.389575 eV Total energy + Delta-G solvation = -3951.309445 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.56285 -41.59519 -39.81648 -39.16989 -37.00678 -35.99805 -34.22945 -33.80746 -31.38017 -30.64003 -29.65190 -28.27810 -26.81831 -26.27519 -24.49575 -23.72481 -22.83215 -22.25886 -21.52266 -20.83835 -19.32136 -18.65874 -18.56150 -17.72505 -17.43243 -17.21790 -16.71220 -16.43292 -16.18681 -15.99000 -15.74407 -15.44214 -15.26496 -14.98643 -14.53456 -14.24264 -14.17544 -13.87886 -13.41186 -13.18830 -13.06012 -12.96914 -12.93441 -12.74725 -12.48196 -12.31120 -12.06877 -11.99442 -11.81046 -11.73085 -11.65404 -11.46129 -11.00636 -10.74463 -10.55800 -9.83790 -9.52338 -8.90165 -7.83223 -5.19588 0.04568 0.87215 0.90946 1.46590 1.48018 1.58241 1.66489 1.95436 2.18972 2.51302 3.15870 3.35555 3.42141 3.76498 3.84231 3.96260 4.08465 4.10704 4.15058 4.23581 4.28914 4.29152 4.33605 4.42566 4.56371 4.58206 4.60885 4.69256 4.69675 4.90745 5.04825 5.08068 5.11582 5.21089 5.29676 5.44318 5.49060 5.59294 5.59747 5.71767 5.82876 6.17789 6.33287 6.50997 7.04488 7.06057 7.75329 8.46288 9.29192 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.027777 B = 0.003188 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.775865 B = 8781.348001 C = 9504.865211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.253 6.253 3 C 0.387 3.613 4 N -0.476 5.476 5 C -0.069 4.069 6 C 0.596 3.404 7 O -0.558 6.558 8 N -0.583 5.583 9 C 0.072 3.928 10 C -0.114 4.114 11 C -0.112 4.112 12 C 0.155 3.845 13 H -0.001 1.001 14 C 0.129 3.871 15 H 0.082 0.918 16 C -0.110 4.110 17 C 0.183 3.817 18 N -0.614 5.614 19 C -0.231 4.231 20 H 0.087 0.913 21 C -0.070 4.070 22 N -0.954 5.954 23 Si 0.979 3.021 24 H -0.263 1.263 25 H -0.292 1.292 26 H -0.295 1.295 27 C 0.032 3.968 28 O -0.213 6.213 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.146 0.854 32 H 0.154 0.846 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.104 0.896 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.028 0.972 41 H 0.005 0.995 42 H 0.246 0.754 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.840 -12.723 -6.514 28.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.161 6.161 3 C 0.142 3.858 4 N -0.223 5.223 5 C -0.186 4.186 6 C 0.384 3.616 7 O -0.438 6.438 8 N -0.313 5.313 9 C -0.049 4.049 10 C -0.152 4.152 11 C -0.150 4.150 12 C 0.047 3.953 13 H 0.016 0.984 14 C 0.024 3.976 15 H 0.100 0.900 16 C -0.148 4.148 17 C 0.058 3.942 18 N -0.339 5.339 19 C -0.360 4.360 20 H 0.105 0.895 21 C -0.262 4.262 22 N -0.603 5.603 23 Si 0.808 3.192 24 H -0.187 1.187 25 H -0.219 1.219 26 H -0.222 1.222 27 C -0.041 4.041 28 O -0.104 6.104 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.164 0.836 32 H 0.171 0.829 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.123 0.877 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.047 0.953 41 H 0.023 0.977 42 H 0.056 0.944 43 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -24.223 -12.767 -6.487 28.140 hybrid contribution 0.693 0.943 0.603 1.317 sum -23.530 -11.823 -5.884 26.983 Atomic orbital electron populations 1.23712 0.72638 1.07786 1.03904 1.86430 1.26114 1.14741 1.88786 1.23736 0.85624 0.80284 0.96191 1.70630 1.10116 1.15373 1.26175 1.21431 0.95375 0.88813 1.13027 1.17044 0.82409 0.85542 0.76580 1.90814 1.86603 1.13984 1.52366 1.47878 1.04802 1.08671 1.69927 1.22939 1.07200 0.76427 0.98333 1.21809 0.94027 1.01198 0.98188 1.21433 0.98030 0.93811 1.01749 1.20989 0.88746 0.92399 0.93166 0.98352 1.22217 0.82826 0.94598 0.97939 0.90001 1.22664 0.97287 0.94369 1.00509 1.21616 0.92193 0.86785 0.93607 1.44606 1.16532 1.09607 1.63128 1.19446 0.92775 0.97532 1.26222 0.89487 1.25684 1.01943 0.96023 1.02566 1.70173 1.34106 1.04786 1.51280 0.84991 0.79087 0.77807 0.77350 1.18706 1.21885 1.22217 1.25460 0.83749 0.94733 1.00139 1.84430 1.38883 1.15495 1.71580 0.90586 0.90427 0.83613 0.82944 0.91053 0.92603 0.87739 0.92441 0.91768 0.91042 0.91042 0.95326 0.97695 0.94430 0.71972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 10.73 113.37 1.22 1.28 16 2 O -0.25 -3.67 10.55 -64.19 -0.68 -4.35 16 3 C 0.39 7.38 8.98 130.43 1.17 8.55 16 4 N -0.48 -11.57 7.82 -419.39 -3.28 -14.84 16 5 C -0.07 -1.80 6.78 40.31 0.27 -1.52 16 6 C 0.60 19.90 7.63 86.65 0.66 20.56 16 7 O -0.56 -21.17 13.88 -4.10 -0.06 -21.23 16 8 N -0.58 -19.90 2.90 -794.02 -2.31 -22.20 16 9 C 0.07 2.00 6.30 86.03 0.54 2.55 16 10 C -0.11 -3.15 5.93 30.79 0.18 -2.97 16 11 C -0.11 -4.03 5.45 30.26 0.16 -3.87 16 12 C 0.16 6.88 2.59 45.69 0.12 7.00 16 13 H 0.00 -0.05 8.06 -2.39 -0.02 -0.06 16 14 C 0.13 5.22 3.33 46.32 0.15 5.38 16 15 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 16 C -0.11 -4.91 4.94 31.59 0.16 -4.76 16 17 C 0.18 9.89 5.49 86.68 0.48 10.37 16 18 N -0.61 -33.32 3.38 -667.00 -2.25 -35.57 16 19 C -0.23 -13.26 9.95 84.03 0.84 -12.43 16 20 H 0.09 4.73 7.31 -2.91 -0.02 4.71 16 21 C -0.07 -4.08 5.49 84.86 0.47 -3.61 16 22 N -0.95 -59.56 10.47 21.65 0.23 -59.33 16 23 Si 0.98 46.94 29.55 68.60 2.03 48.97 16 24 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 25 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 26 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 27 C 0.03 0.59 11.94 67.28 0.80 1.39 16 28 O -0.21 -3.48 10.20 18.90 0.19 -3.28 16 29 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.08 0.23 8.14 -2.39 -0.02 0.22 16 31 H 0.15 -0.11 8.14 -2.39 -0.02 -0.13 16 32 H 0.15 4.03 3.85 -33.21 -0.13 3.90 16 33 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.06 2.14 7.70 -2.39 -0.02 2.13 16 37 H 0.06 2.29 8.12 -2.39 -0.02 2.27 16 38 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 39 H 0.07 3.29 6.38 -2.38 -0.02 3.28 16 40 H 0.03 1.68 7.23 -2.39 -0.02 1.66 16 41 H 0.00 0.29 7.80 -2.39 -0.02 0.27 16 42 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 43 H 0.26 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -75.96 343.53 2.01 -73.95 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 0.91 Total: 9.96 kcal Atomic # 6 Polarization: 20.71 SS G_CDS: 7.22 Total: 27.93 kcal Atomic # 7 Polarization: -124.34 SS G_CDS: -7.61 Total: -131.95 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -0.54 Total: -28.86 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -75.96 2.01 -73.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049621122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.883 kcal (2) G-P(sol) polarization free energy of solvation -75.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds