Wall clock time and date at job start Tue Mar 31 2020 13:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35347 * 117.00009 * 2 1 4 4 N 1.30554 * 125.45108 * 180.29650 * 3 2 1 5 5 C 1.36321 * 108.38673 * 180.16150 * 4 3 2 6 6 C 1.47368 * 126.41464 * 179.82747 * 5 4 3 7 7 O 1.21616 * 120.00186 * 186.80002 * 6 5 4 8 8 N 1.34778 * 119.99561 * 6.79036 * 6 5 4 9 9 C 1.46801 * 119.56972 * 186.13813 * 8 6 5 10 10 C 1.53465 * 107.59619 * 127.96869 * 9 8 6 11 11 C 1.52730 * 108.44340 * 58.07344 * 10 9 8 12 12 C 1.53015 * 110.79728 * 296.22578 * 11 10 9 13 13 H 1.09001 * 111.38797 * 290.28842 * 12 11 10 14 14 C 1.45113 * 119.57720 * 6.14075 * 8 6 5 15 15 H 1.08996 * 109.96721 * 348.05294 * 14 8 6 16 16 C 1.54424 * 111.60835 * 111.33276 * 14 8 6 17 17 C 1.54594 * 102.52569 * 156.38946 * 16 14 8 18 18 N 1.47125 * 107.24040 * 338.65584 * 17 16 14 19 19 C 1.36936 * 125.76972 * 177.31775 * 18 17 16 20 20 H 1.07999 * 119.99932 * 175.13919 * 19 18 17 21 21 C 1.38805 * 120.00014 * 355.13710 * 19 18 17 22 22 N 1.31616 * 120.00271 * 214.03529 * 21 19 18 23 23 Si 1.86810 * 119.99858 * 34.03672 * 21 19 18 24 24 H 1.48495 * 109.47013 * 174.23518 * 23 21 19 25 25 H 1.48501 * 109.46968 * 54.23602 * 23 21 19 26 26 H 1.48500 * 109.46889 * 294.23325 * 23 21 19 27 27 C 1.35918 * 107.17286 * 359.56667 * 5 4 3 28 28 O 1.34204 * 125.44687 * 359.97247 * 3 2 1 29 29 H 1.09002 * 109.47449 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47476 * 299.99841 * 1 2 3 31 31 H 1.08993 * 109.47444 * 59.99946 * 1 2 3 32 32 H 1.08997 * 109.84000 * 8.44364 * 9 8 6 33 33 H 1.08998 * 109.88580 * 247.51653 * 9 8 6 34 34 H 1.09003 * 109.63953 * 298.38548 * 10 9 8 35 35 H 1.09003 * 109.81494 * 177.86229 * 10 9 8 36 36 H 1.08998 * 109.21917 * 175.88911 * 11 10 9 37 37 H 1.09000 * 109.21424 * 56.56030 * 11 10 9 38 38 H 1.09002 * 110.81155 * 274.81811 * 16 14 8 39 39 H 1.08997 * 110.81389 * 38.34378 * 16 14 8 40 40 H 1.08995 * 110.00246 * 219.19232 * 17 16 14 41 41 H 1.09001 * 109.78814 * 98.00429 * 17 16 14 42 42 H 0.97001 * 120.00187 * 5.00784 * 22 21 19 43 43 H 1.08002 * 126.45163 * 180.29580 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2059 0.0000 4 7 3.3348 1.3978 -0.0055 5 6 3.5700 2.7406 0.0002 6 6 4.8891 3.3976 0.0005 7 8 4.9675 4.6043 0.1306 8 7 6.0088 2.6612 -0.1432 9 6 7.3213 3.3042 -0.0065 10 6 8.1336 2.4894 1.0091 11 6 8.2370 1.0520 0.5032 12 6 6.8551 0.3984 0.4377 13 1 6.4529 0.2182 1.4347 14 6 5.9012 1.2430 -0.4311 15 1 4.8731 0.9109 -0.2871 16 6 6.3864 0.9144 -1.8598 17 6 6.7698 -0.5791 -1.7485 18 7 7.0052 -0.8639 -0.3244 19 6 7.3162 -2.0872 0.2065 20 1 7.5473 -2.1767 1.2577 21 6 7.3345 -3.2122 -0.6064 22 7 6.9669 -4.3797 -0.1226 23 14 7.8810 -3.0691 -2.3870 24 1 7.9444 -4.4222 -2.9955 25 1 9.2238 -2.4375 -2.4434 26 1 6.9091 -2.2340 -3.1374 27 6 2.3602 3.3599 -0.0003 28 8 1.4227 2.3958 -0.0005 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 7.1972 4.3256 0.3534 33 1 7.8329 3.3110 -0.9690 34 1 7.6302 2.5024 1.9758 35 1 9.1321 2.9150 1.1103 36 1 8.8731 0.4791 1.1780 37 1 8.6808 1.0531 -0.4924 38 1 5.5842 1.0576 -2.5838 39 1 7.2572 1.5156 -2.1210 40 1 7.6768 -0.7748 -2.3205 41 1 5.9535 -1.1984 -2.1204 42 1 6.6145 -4.4420 0.7790 43 1 2.1849 4.4256 -0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049621130.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:49 Heat of formation + Delta-G solvation = 23.050726 kcal Electronic energy + Delta-G solvation = -28759.886244 eV Core-core repulsion = 24809.969683 eV Total energy + Delta-G solvation = -3949.916561 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.64641 -40.32056 -38.99319 -38.17593 -35.25489 -35.13353 -32.66010 -32.19592 -30.29274 -29.16194 -28.73193 -27.68307 -25.53487 -23.85947 -23.45932 -22.84350 -21.69122 -21.01881 -20.13186 -19.26775 -17.97655 -17.69190 -17.39839 -17.02289 -16.66031 -15.90609 -15.47297 -15.41294 -15.12538 -14.84239 -14.44759 -13.89417 -13.76945 -13.61297 -13.35760 -13.09125 -12.78478 -12.52194 -12.36464 -12.20336 -12.16958 -11.71928 -11.33960 -11.19570 -11.03777 -10.99750 -10.79808 -10.40938 -10.32810 -10.25719 -9.99469 -9.62035 -9.18313 -8.99518 -8.86519 -8.34572 -8.19480 -7.00994 -6.28230 -3.01908 0.96405 1.73823 1.90723 2.56452 3.05831 3.24715 3.52139 3.61380 3.78818 4.22021 4.58535 4.71053 4.72484 4.74611 4.84001 5.02086 5.12089 5.16961 5.23191 5.29502 5.34861 5.44101 5.46844 5.47728 5.55555 5.75264 5.78395 6.04997 6.07749 6.10899 6.22975 6.32674 6.34521 6.42614 6.58280 6.65306 6.83935 6.91102 7.01031 7.13796 7.33412 7.63297 7.81361 8.15549 8.42440 9.11692 9.69382 10.37687 11.19644 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011201 B = 0.005695 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.253310 B = 4915.688635 C = 6721.049035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.238 6.238 3 C 0.386 3.614 4 N -0.443 5.443 5 C -0.041 4.041 6 C 0.600 3.400 7 O -0.547 6.547 8 N -0.571 5.571 9 C 0.111 3.889 10 C -0.131 4.131 11 C -0.136 4.136 12 C 0.164 3.836 13 H 0.065 0.935 14 C 0.078 3.922 15 H 0.172 0.828 16 C -0.137 4.137 17 C 0.126 3.874 18 N -0.600 5.600 19 C -0.332 4.332 20 H 0.079 0.921 21 C -0.010 4.010 22 N -0.906 5.906 23 Si 1.030 2.970 24 H -0.300 1.300 25 H -0.298 1.298 26 H -0.277 1.277 27 C -0.002 4.002 28 O -0.226 6.226 29 H 0.120 0.880 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.023 0.977 41 H 0.047 0.953 42 H 0.264 0.736 43 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.816 15.954 -0.409 19.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.145 6.145 3 C 0.142 3.858 4 N -0.189 5.189 5 C -0.159 4.159 6 C 0.387 3.613 7 O -0.426 6.426 8 N -0.300 5.300 9 C -0.011 4.011 10 C -0.170 4.170 11 C -0.176 4.176 12 C 0.055 3.945 13 H 0.083 0.917 14 C -0.026 4.026 15 H 0.188 0.812 16 C -0.176 4.176 17 C 0.001 3.999 18 N -0.326 5.326 19 C -0.458 4.458 20 H 0.097 0.903 21 C -0.212 4.212 22 N -0.545 5.545 23 Si 0.862 3.138 24 H -0.228 1.228 25 H -0.227 1.227 26 H -0.204 1.204 27 C -0.074 4.074 28 O -0.118 6.118 29 H 0.138 0.862 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.041 0.959 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -11.017 14.808 -1.673 18.533 hybrid contribution -0.652 1.273 1.271 1.914 sum -11.670 16.081 -0.402 19.873 Atomic orbital electron populations 1.23318 0.75237 1.05848 1.02767 1.86503 1.23556 1.15584 1.88833 1.23871 0.85830 0.79446 0.96678 1.70879 1.08507 1.14933 1.24545 1.21720 0.95837 0.88382 1.09992 1.16789 0.82077 0.85584 0.76883 1.90783 1.86482 1.12985 1.52318 1.47467 1.05209 1.10052 1.67262 1.21757 0.82408 0.97318 0.99631 1.21910 0.99531 0.96926 0.98646 1.22190 1.00331 0.93752 1.01296 1.21301 0.91937 0.86173 0.95058 0.91734 1.23395 1.06843 0.77685 0.94715 0.81223 1.22807 1.00326 0.97586 0.96848 1.21846 0.97903 0.92697 0.87487 1.45047 1.82372 1.04538 1.00643 1.19919 1.48110 0.82470 0.95300 0.90345 1.25494 0.99463 0.91804 1.04393 1.70917 1.39289 1.26508 1.17808 0.84503 0.77142 0.74210 0.77984 1.22760 1.22666 1.20383 1.24846 0.84825 0.93684 1.04074 1.84385 1.39536 1.15881 1.71980 0.86172 0.91466 0.91446 0.89109 0.91325 0.91795 0.91189 0.92087 0.92172 0.91701 0.91873 0.95935 0.93520 0.92652 0.74861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 10.73 101.05 1.08 1.24 16 2 O -0.24 -3.00 10.55 -40.96 -0.43 -3.43 16 3 C 0.39 5.27 8.98 52.22 0.47 5.74 16 4 N -0.44 -7.19 7.73 -11.72 -0.09 -7.28 16 5 C -0.04 -0.60 6.70 -82.99 -0.56 -1.15 16 6 C 0.60 9.59 7.64 -12.54 -0.10 9.49 16 7 O -0.55 -9.19 16.25 5.26 0.09 -9.10 16 8 N -0.57 -9.29 2.73 -166.30 -0.45 -9.75 16 9 C 0.11 1.59 6.13 -3.64 -0.02 1.56 16 10 C -0.13 -1.90 6.11 -26.63 -0.16 -2.06 16 11 C -0.14 -2.47 5.10 -26.86 -0.14 -2.61 16 12 C 0.16 3.41 3.59 -66.35 -0.24 3.17 16 13 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 14 C 0.08 1.44 3.02 -67.29 -0.20 1.23 16 15 H 0.17 3.33 3.50 -85.19 -0.30 3.03 16 16 C -0.14 -2.53 6.08 -25.15 -0.15 -2.68 16 17 C 0.13 2.86 4.36 -2.86 -0.01 2.84 16 18 N -0.60 -14.89 2.90 -162.17 -0.47 -15.36 16 19 C -0.33 -9.52 10.41 -15.06 -0.16 -9.68 16 20 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 21 C -0.01 -0.29 5.43 -17.43 -0.09 -0.39 16 22 N -0.91 -28.42 13.70 55.49 0.76 -27.66 16 23 Si 1.03 26.45 25.14 -169.99 -4.27 22.17 16 24 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 25 H -0.30 -7.52 7.11 56.52 0.40 -7.11 16 26 H -0.28 -6.53 5.03 56.52 0.28 -6.25 16 27 C 0.00 -0.02 11.94 29.90 0.36 0.33 16 28 O -0.23 -2.50 10.20 -17.75 -0.18 -2.68 16 29 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 1.24 6.99 -51.93 -0.36 0.88 16 33 H 0.07 0.93 7.53 -51.93 -0.39 0.54 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.06 1.13 7.11 -51.93 -0.37 0.76 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.08 6.81 -51.93 -0.35 0.73 16 40 H 0.02 0.53 5.09 -51.93 -0.26 0.27 16 41 H 0.05 1.13 6.54 -51.93 -0.34 0.79 16 42 H 0.26 8.19 8.73 -40.82 -0.36 7.83 16 43 H 0.24 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 338.21 15.07 5.10 5.10 Total: -1.00 -34.50 338.21 -5.76 -40.26 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -5.88 Total: 0.67 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 0.08 Total: 7.05 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: -0.25 Total: -60.04 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.53 Total: -15.21 kcal Atomic # 14 Polarization: 26.45 SS G_CDS: -4.27 Total: 22.17 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.50 -5.76 -40.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049621130.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.308 kcal (2) G-P(sol) polarization free energy of solvation -34.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds