Wall clock time and date at job start Tue Mar 31 2020 13:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35347 * 117.00009 * 2 1 4 4 N 1.30554 * 125.45108 * 180.29650 * 3 2 1 5 5 C 1.36321 * 108.38673 * 180.16150 * 4 3 2 6 6 C 1.47368 * 126.41464 * 179.82747 * 5 4 3 7 7 O 1.21616 * 120.00186 * 186.80002 * 6 5 4 8 8 N 1.34778 * 119.99561 * 6.79036 * 6 5 4 9 9 C 1.46801 * 119.56972 * 186.13813 * 8 6 5 10 10 C 1.53465 * 107.59619 * 127.96869 * 9 8 6 11 11 C 1.52730 * 108.44340 * 58.07344 * 10 9 8 12 12 C 1.53015 * 110.79728 * 296.22578 * 11 10 9 13 13 H 1.09001 * 111.38797 * 290.28842 * 12 11 10 14 14 C 1.45113 * 119.57720 * 6.14075 * 8 6 5 15 15 H 1.08996 * 109.96721 * 348.05294 * 14 8 6 16 16 C 1.54424 * 111.60835 * 111.33276 * 14 8 6 17 17 C 1.54594 * 102.52569 * 156.38946 * 16 14 8 18 18 N 1.47125 * 107.24040 * 338.65584 * 17 16 14 19 19 C 1.36936 * 125.76972 * 177.31775 * 18 17 16 20 20 H 1.07999 * 119.99932 * 175.13919 * 19 18 17 21 21 C 1.38805 * 120.00014 * 355.13710 * 19 18 17 22 22 N 1.31616 * 120.00271 * 214.03529 * 21 19 18 23 23 Si 1.86810 * 119.99858 * 34.03672 * 21 19 18 24 24 H 1.48495 * 109.47013 * 174.23518 * 23 21 19 25 25 H 1.48501 * 109.46968 * 54.23602 * 23 21 19 26 26 H 1.48500 * 109.46889 * 294.23325 * 23 21 19 27 27 C 1.35918 * 107.17286 * 359.56667 * 5 4 3 28 28 O 1.34204 * 125.44687 * 359.97247 * 3 2 1 29 29 H 1.09002 * 109.47449 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47476 * 299.99841 * 1 2 3 31 31 H 1.08993 * 109.47444 * 59.99946 * 1 2 3 32 32 H 1.08997 * 109.84000 * 8.44364 * 9 8 6 33 33 H 1.08998 * 109.88580 * 247.51653 * 9 8 6 34 34 H 1.09003 * 109.63953 * 298.38548 * 10 9 8 35 35 H 1.09003 * 109.81494 * 177.86229 * 10 9 8 36 36 H 1.08998 * 109.21917 * 175.88911 * 11 10 9 37 37 H 1.09000 * 109.21424 * 56.56030 * 11 10 9 38 38 H 1.09002 * 110.81155 * 274.81811 * 16 14 8 39 39 H 1.08997 * 110.81389 * 38.34378 * 16 14 8 40 40 H 1.08995 * 110.00246 * 219.19232 * 17 16 14 41 41 H 1.09001 * 109.78814 * 98.00429 * 17 16 14 42 42 H 0.97001 * 120.00187 * 5.00784 * 22 21 19 43 43 H 1.08002 * 126.45163 * 180.29580 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2059 0.0000 4 7 3.3348 1.3978 -0.0055 5 6 3.5700 2.7406 0.0002 6 6 4.8891 3.3976 0.0005 7 8 4.9675 4.6043 0.1306 8 7 6.0088 2.6612 -0.1432 9 6 7.3213 3.3042 -0.0065 10 6 8.1336 2.4894 1.0091 11 6 8.2370 1.0520 0.5032 12 6 6.8551 0.3984 0.4377 13 1 6.4529 0.2182 1.4347 14 6 5.9012 1.2430 -0.4311 15 1 4.8731 0.9109 -0.2871 16 6 6.3864 0.9144 -1.8598 17 6 6.7698 -0.5791 -1.7485 18 7 7.0052 -0.8639 -0.3244 19 6 7.3162 -2.0872 0.2065 20 1 7.5473 -2.1767 1.2577 21 6 7.3345 -3.2122 -0.6064 22 7 6.9669 -4.3797 -0.1226 23 14 7.8810 -3.0691 -2.3870 24 1 7.9444 -4.4222 -2.9955 25 1 9.2238 -2.4375 -2.4434 26 1 6.9091 -2.2340 -3.1374 27 6 2.3602 3.3599 -0.0003 28 8 1.4227 2.3958 -0.0005 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 7.1972 4.3256 0.3534 33 1 7.8329 3.3110 -0.9690 34 1 7.6302 2.5024 1.9758 35 1 9.1321 2.9150 1.1103 36 1 8.8731 0.4791 1.1780 37 1 8.6808 1.0531 -0.4924 38 1 5.5842 1.0576 -2.5838 39 1 7.2572 1.5156 -2.1210 40 1 7.6768 -0.7748 -2.3205 41 1 5.9535 -1.1984 -2.1204 42 1 6.6145 -4.4420 0.7790 43 1 2.1849 4.4256 -0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049621130.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:48 Heat of formation + Delta-G solvation = -3.550954 kcal Electronic energy + Delta-G solvation = -28761.039779 eV Core-core repulsion = 24809.969683 eV Total energy + Delta-G solvation = -3951.070096 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.61204 -41.65084 -39.91368 -39.55793 -36.70953 -36.27522 -34.33710 -33.94036 -31.28922 -30.98419 -30.22844 -28.33772 -26.79453 -25.76095 -24.70352 -23.96248 -23.02160 -22.44977 -21.63378 -20.46638 -19.63056 -18.89479 -18.63715 -18.37069 -17.51069 -17.34114 -16.77412 -16.43688 -16.32537 -15.95916 -15.91447 -15.61256 -15.23161 -15.04622 -14.66551 -14.54880 -14.27207 -14.01153 -13.64203 -13.37520 -13.11345 -13.06017 -12.97505 -12.66850 -12.44801 -12.29099 -12.12464 -12.06301 -11.82433 -11.74638 -11.65637 -11.44437 -10.97223 -10.53363 -10.38269 -9.87634 -9.58778 -9.08332 -8.62738 -5.28561 0.01310 0.82384 0.85709 1.46251 1.53211 1.68460 1.73969 1.93327 2.11759 2.60977 2.92912 3.15473 3.40649 3.74236 3.77563 3.85668 3.98028 4.00644 4.09051 4.14314 4.18897 4.24097 4.24566 4.31757 4.45331 4.53314 4.59093 4.63143 4.66358 4.78347 4.82469 4.92565 4.99788 5.01799 5.07834 5.25033 5.34138 5.49592 5.53529 5.64492 5.85614 6.13133 6.24239 6.48494 6.86542 6.96379 7.53223 8.21196 8.85904 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011201 B = 0.005695 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.253310 B = 4915.688635 C = 6721.049035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.263 6.263 3 C 0.386 3.614 4 N -0.486 5.486 5 C -0.083 4.083 6 C 0.603 3.397 7 O -0.556 6.556 8 N -0.576 5.576 9 C 0.110 3.890 10 C -0.120 4.120 11 C -0.126 4.126 12 C 0.157 3.843 13 H 0.037 0.963 14 C 0.091 3.909 15 H 0.166 0.834 16 C -0.124 4.124 17 C 0.120 3.880 18 N -0.619 5.619 19 C -0.321 4.321 20 H 0.046 0.954 21 C -0.065 4.065 22 N -0.941 5.941 23 Si 1.073 2.927 24 H -0.309 1.309 25 H -0.288 1.288 26 H -0.243 1.243 27 C 0.039 3.961 28 O -0.211 6.211 29 H 0.138 0.862 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.040 0.960 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.025 0.975 41 H 0.029 0.971 42 H 0.249 0.751 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.758 19.266 -1.995 23.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.171 6.171 3 C 0.141 3.859 4 N -0.233 5.233 5 C -0.200 4.200 6 C 0.391 3.609 7 O -0.436 6.436 8 N -0.305 5.305 9 C -0.011 4.011 10 C -0.159 4.159 11 C -0.166 4.166 12 C 0.049 3.951 13 H 0.056 0.944 14 C -0.014 4.014 15 H 0.181 0.819 16 C -0.163 4.163 17 C -0.005 4.005 18 N -0.345 5.345 19 C -0.449 4.449 20 H 0.064 0.936 21 C -0.261 4.261 22 N -0.584 5.584 23 Si 0.900 3.100 24 H -0.238 1.238 25 H -0.215 1.215 26 H -0.167 1.167 27 C -0.033 4.033 28 O -0.101 6.101 29 H 0.156 0.844 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.121 0.879 33 H 0.102 0.898 34 H 0.077 0.923 35 H 0.118 0.882 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.043 0.957 41 H 0.047 0.953 42 H 0.058 0.942 43 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -11.978 18.189 -3.248 22.020 hybrid contribution -0.487 0.278 1.922 2.003 sum -12.465 18.468 -1.326 22.320 Atomic orbital electron populations 1.23711 0.72498 1.07587 1.04214 1.86493 1.26424 1.15482 1.88744 1.23725 0.85586 0.80253 0.96363 1.70619 1.10245 1.16265 1.26128 1.21660 0.96418 0.88287 1.13613 1.16900 0.82403 0.85449 0.76131 1.90769 1.86760 1.13172 1.52871 1.47438 1.06285 1.08988 1.67748 1.21904 0.81527 0.97455 1.00235 1.21843 1.01414 0.94279 0.98317 1.21994 0.97751 0.95862 1.00977 1.21457 0.94190 0.85469 0.93946 0.94440 1.23064 1.05773 0.78742 0.93860 0.81907 1.22747 1.01698 0.94563 0.97244 1.21912 0.97198 0.95505 0.85855 1.45044 1.82324 1.04640 1.02450 1.19765 1.46579 0.84624 0.93948 0.93648 1.26702 0.99786 0.91480 1.08093 1.71023 1.42212 1.27727 1.17390 0.83954 0.77851 0.74325 0.73910 1.23754 1.21488 1.16742 1.25622 0.83462 0.94771 0.99470 1.84436 1.39014 1.15240 1.71433 0.84391 0.90076 0.89901 0.87929 0.89836 0.92302 0.88164 0.94130 0.92188 0.89849 0.89876 0.95744 0.95286 0.94185 0.70875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 10.73 113.37 1.22 1.38 16 2 O -0.26 -6.51 10.55 -64.15 -0.68 -7.18 16 3 C 0.39 10.11 8.98 130.43 1.17 11.28 16 4 N -0.49 -15.47 7.73 -419.39 -3.24 -18.71 16 5 C -0.08 -2.26 6.70 40.31 0.27 -1.99 16 6 C 0.60 17.93 7.64 86.65 0.66 18.59 16 7 O -0.56 -17.06 16.25 -4.08 -0.07 -17.13 16 8 N -0.58 -17.57 2.73 -798.30 -2.18 -19.76 16 9 C 0.11 2.81 6.13 86.48 0.53 3.34 16 10 C -0.12 -3.21 6.11 30.66 0.19 -3.02 16 11 C -0.13 -4.51 5.10 30.51 0.16 -4.36 16 12 C 0.16 6.61 3.59 45.08 0.16 6.77 16 13 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 14 C 0.09 3.26 3.02 46.15 0.14 3.40 16 15 H 0.17 6.37 3.50 -68.06 -0.24 6.13 16 16 C -0.12 -4.29 6.08 31.62 0.19 -4.10 16 17 C 0.12 5.32 4.36 86.80 0.38 5.70 16 18 N -0.62 -31.20 2.90 -666.99 -1.93 -33.13 16 19 C -0.32 -19.20 10.41 84.03 0.87 -18.33 16 20 H 0.05 2.94 8.06 -2.91 -0.02 2.92 16 21 C -0.06 -3.96 5.43 84.86 0.46 -3.50 16 22 N -0.94 -61.54 13.70 21.65 0.30 -61.24 16 23 Si 1.07 53.95 25.14 68.60 1.72 55.68 16 24 H -0.31 -15.94 7.11 99.48 0.71 -15.24 16 25 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 26 H -0.24 -10.83 5.03 99.48 0.50 -10.33 16 27 C 0.04 0.73 11.94 67.28 0.80 1.53 16 28 O -0.21 -4.08 10.20 18.92 0.19 -3.89 16 29 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.10 2.46 6.99 -2.39 -0.02 2.44 16 33 H 0.08 1.92 7.53 -2.39 -0.02 1.91 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.06 2.15 7.11 -2.39 -0.02 2.13 16 38 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.08 2.55 6.81 -2.39 -0.02 2.54 16 40 H 0.03 1.10 5.09 -2.39 -0.01 1.09 16 41 H 0.03 1.39 6.54 -2.39 -0.02 1.37 16 42 H 0.25 16.41 8.73 -92.71 -0.81 15.60 16 43 H 0.28 2.59 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -78.36 338.21 1.89 -76.47 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.57 Total: 12.19 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 7.20 Total: 16.70 kcal Atomic # 7 Polarization: -125.78 SS G_CDS: -7.06 Total: -132.83 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.55 Total: -28.20 kcal Atomic # 14 Polarization: 53.95 SS G_CDS: 1.72 Total: 55.68 kcal Total: -78.36 1.89 -76.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049621130.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.914 kcal (2) G-P(sol) polarization free energy of solvation -78.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds