Wall clock time and date at job start Tue Mar 31 2020 13:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35348 * 117.00162 * 2 1 4 4 N 1.30554 * 125.44761 * 180.34588 * 3 2 1 5 5 C 1.36330 * 108.38600 * 180.17020 * 4 3 2 6 6 C 1.47362 * 126.41445 * 179.82822 * 5 4 3 7 7 O 1.21626 * 119.99770 * 186.74873 * 6 5 4 8 8 N 1.34771 * 120.00119 * 6.74727 * 6 5 4 9 9 C 1.45739 * 117.75885 * 177.87307 * 8 6 5 10 10 C 1.53060 * 109.55286 * 218.88945 * 9 8 6 11 11 C 1.52938 * 108.49056 * 306.18943 * 10 9 8 12 12 C 1.52926 * 109.74327 * 66.02848 * 11 10 9 13 13 H 1.08998 * 110.50491 * 66.07763 * 12 11 10 14 14 C 1.44193 * 117.75774 * 357.89228 * 8 6 5 15 15 H 1.09000 * 109.22572 * 27.38609 * 14 8 6 16 16 C 1.54065 * 111.76354 * 266.48756 * 14 8 6 17 17 C 1.54048 * 103.74499 * 206.75286 * 16 14 8 18 18 N 1.46885 * 107.71144 * 17.12607 * 17 16 14 19 19 C 1.36936 * 125.58634 * 182.96605 * 18 17 16 20 20 H 1.07999 * 120.00250 * 179.97438 * 19 18 17 21 21 C 1.38818 * 119.99554 * 359.97391 * 19 18 17 22 22 N 1.31608 * 120.00177 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99571 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47351 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46932 * 120.00127 * 23 21 19 26 26 H 1.48502 * 109.47285 * 239.99959 * 23 21 19 27 27 C 1.35925 * 107.17179 * 359.56670 * 5 4 3 28 28 O 1.34203 * 125.44612 * 0.03720 * 3 2 1 29 29 H 1.08993 * 109.47353 * 59.99243 * 1 2 3 30 30 H 1.09001 * 109.47461 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46687 * 299.99096 * 1 2 3 32 32 H 1.08999 * 109.45465 * 98.86638 * 9 8 6 33 33 H 1.08999 * 109.44171 * 338.90643 * 9 8 6 34 34 H 1.08996 * 109.63142 * 186.48395 * 10 9 8 35 35 H 1.09003 * 109.79741 * 65.98319 * 10 9 8 36 36 H 1.09002 * 109.41696 * 186.09718 * 11 10 9 37 37 H 1.09004 * 109.41656 * 305.96480 * 11 10 9 38 38 H 1.09004 * 110.57106 * 325.31766 * 16 14 8 39 39 H 1.08999 * 110.56861 * 88.18466 * 16 14 8 40 40 H 1.09004 * 109.81638 * 136.67472 * 17 16 14 41 41 H 1.09006 * 109.81515 * 257.50754 * 17 16 14 42 42 H 0.97004 * 120.00294 * 179.97438 * 22 21 19 43 43 H 1.07993 * 126.45764 * 180.25901 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2059 0.0000 4 7 3.3349 1.3977 -0.0064 5 6 3.5702 2.7405 -0.0002 6 6 4.8893 3.3974 -0.0005 7 8 4.9677 4.6042 0.1292 8 7 6.0088 2.6611 -0.1447 9 6 7.2840 3.3654 -0.1856 10 6 8.2005 2.7061 -1.2191 11 6 8.2983 1.2139 -0.8988 12 6 6.9358 0.5509 -1.1054 13 1 6.6558 0.5736 -2.1585 14 6 5.8628 1.2303 -0.2483 15 1 4.8842 0.9989 -0.6687 16 6 5.9998 0.5413 1.1229 17 6 6.5031 -0.8722 0.7737 18 7 7.0229 -0.8348 -0.5996 19 6 7.5083 -1.9084 -1.2974 20 1 7.8691 -1.7779 -2.3070 21 6 7.5366 -3.1645 -0.7071 22 7 7.0965 -3.3236 0.5230 23 14 8.1995 -4.6289 -1.6587 24 1 8.6296 -4.1877 -3.0099 25 1 9.3604 -5.2057 -0.9341 26 1 7.1362 -5.6574 -1.7884 27 6 2.3603 3.3600 0.0006 28 8 1.4227 2.3958 0.0007 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 7.7544 3.3222 0.7968 33 1 7.1149 4.4062 -0.4617 34 1 9.1916 3.1570 -1.1702 35 1 7.7863 2.8398 -2.2185 36 1 9.0312 0.7490 -1.5583 37 1 8.6103 1.0854 0.1376 38 1 6.7275 1.0645 1.7434 39 1 5.0334 0.4908 1.6244 40 1 7.2974 -1.1620 1.4615 41 1 5.6801 -1.5840 0.8390 42 1 7.1160 -4.2013 0.9354 43 1 2.1850 4.4256 0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049621132.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:52 Heat of formation + Delta-G solvation = 13.021252 kcal Electronic energy + Delta-G solvation = -28700.541884 eV Core-core repulsion = 24750.190413 eV Total energy + Delta-G solvation = -3950.351471 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.53106 -40.26138 -38.88848 -37.92939 -35.14778 -34.97680 -32.70088 -31.99131 -30.18103 -28.83865 -28.25148 -27.60251 -25.27772 -24.38325 -23.30665 -22.69743 -21.56725 -20.65048 -19.89208 -19.14569 -17.76331 -17.59626 -17.18639 -16.68064 -16.54099 -15.67238 -15.40739 -15.27802 -14.86080 -14.66666 -14.33237 -13.82892 -13.66419 -13.61184 -13.22400 -12.82373 -12.49475 -12.39613 -12.19105 -11.96926 -11.85541 -11.41646 -11.09943 -10.92064 -10.89169 -10.70134 -10.54955 -10.43723 -10.30563 -10.16107 -9.97839 -9.73875 -9.54301 -9.08513 -8.77864 -8.51082 -8.15795 -6.75315 -5.62734 -2.96357 1.06046 1.85283 2.04094 2.67068 3.18767 3.35151 3.44022 3.49503 3.51830 4.32869 4.56289 4.65863 4.76530 4.82303 4.96627 5.14693 5.23718 5.31124 5.41338 5.42944 5.53972 5.60712 5.61240 5.72939 5.78926 5.94714 6.14759 6.19663 6.26997 6.40980 6.43820 6.52158 6.56987 6.71994 6.77319 7.00250 7.04702 7.21295 7.45090 7.66976 7.70874 7.79034 7.95204 8.26853 8.35649 9.30263 9.90162 10.56481 11.48070 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011542 B = 0.005222 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.442557 B = 5360.680716 C = 7328.419503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.238 6.238 3 C 0.379 3.621 4 N -0.435 5.435 5 C -0.041 4.041 6 C 0.593 3.407 7 O -0.549 6.549 8 N -0.564 5.564 9 C 0.114 3.886 10 C -0.131 4.131 11 C -0.132 4.132 12 C 0.161 3.839 13 H 0.051 0.949 14 C 0.104 3.896 15 H 0.139 0.861 16 C -0.141 4.141 17 C 0.184 3.816 18 N -0.593 5.593 19 C -0.222 4.222 20 H 0.077 0.923 21 C -0.008 4.008 22 N -0.919 5.919 23 Si 0.909 3.091 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.291 1.291 27 C -0.005 4.005 28 O -0.229 6.229 29 H 0.065 0.935 30 H 0.119 0.881 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.063 0.937 40 H 0.036 0.964 41 H 0.052 0.948 42 H 0.250 0.750 43 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.728 12.645 -0.624 17.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.145 6.145 3 C 0.134 3.866 4 N -0.181 5.181 5 C -0.159 4.159 6 C 0.380 3.620 7 O -0.429 6.429 8 N -0.293 5.293 9 C -0.008 4.008 10 C -0.169 4.169 11 C -0.173 4.173 12 C 0.053 3.947 13 H 0.069 0.931 14 C -0.001 4.001 15 H 0.155 0.845 16 C -0.181 4.181 17 C 0.059 3.941 18 N -0.318 5.318 19 C -0.351 4.351 20 H 0.095 0.905 21 C -0.204 4.204 22 N -0.567 5.567 23 Si 0.740 3.260 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.078 4.078 28 O -0.120 6.120 29 H 0.084 0.916 30 H 0.137 0.863 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -11.187 12.225 -0.528 16.579 hybrid contribution -0.318 -0.478 -0.334 0.664 sum -11.505 11.747 -0.862 16.465 Atomic orbital electron populations 1.23285 0.75472 1.05678 1.02665 1.86492 1.23343 1.15696 1.88978 1.23930 0.85962 0.79365 0.97359 1.71570 1.08244 1.14851 1.23412 1.21714 0.95785 0.88532 1.09909 1.16890 0.82312 0.85630 0.77217 1.90776 1.86646 1.13218 1.52253 1.47024 1.05620 1.07845 1.68796 1.21394 0.83175 0.96561 0.99671 1.21845 0.98835 0.97643 0.98600 1.22155 1.00428 0.92696 1.01997 1.20917 0.91672 0.86367 0.95776 0.93094 1.22181 1.03302 0.76469 0.98104 0.84461 1.22879 1.00282 0.98992 0.95934 1.20998 0.97526 0.89958 0.85638 1.44491 1.73251 1.01797 1.12218 1.19057 1.33790 0.85694 0.96529 0.90502 1.24773 1.01589 0.97408 0.96601 1.69992 1.52042 1.21909 1.12769 0.86085 0.78091 0.82995 0.78834 1.20585 1.21899 1.21860 1.24821 0.84940 0.93620 1.04374 1.84370 1.39680 1.15982 1.71998 0.91580 0.86318 0.91555 0.91906 0.89487 0.91140 0.91829 0.92004 0.92017 0.93344 0.91786 0.94587 0.92941 0.93923 0.75019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.73 101.05 1.08 1.26 16 2 O -0.24 -3.10 10.55 -40.97 -0.43 -3.53 16 3 C 0.38 5.36 8.98 52.22 0.47 5.83 16 4 N -0.44 -7.26 6.83 -11.71 -0.08 -7.34 16 5 C -0.04 -0.62 6.60 -82.98 -0.55 -1.17 16 6 C 0.59 9.91 7.58 -12.55 -0.10 9.81 16 7 O -0.55 -9.62 16.13 5.25 0.08 -9.54 16 8 N -0.56 -9.65 2.80 -168.86 -0.47 -10.12 16 9 C 0.11 1.73 6.24 -4.42 -0.03 1.70 16 10 C -0.13 -1.92 6.10 -26.73 -0.16 -2.08 16 11 C -0.13 -2.47 5.31 -26.80 -0.14 -2.61 16 12 C 0.16 3.41 3.30 -67.17 -0.22 3.19 16 13 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 14 C 0.10 2.00 2.30 -68.49 -0.16 1.84 16 15 H 0.14 2.79 4.37 -62.82 -0.27 2.52 16 16 C -0.14 -2.92 6.29 -25.63 -0.16 -3.08 16 17 C 0.18 4.61 5.39 -3.28 -0.02 4.59 16 18 N -0.59 -15.16 2.94 -163.68 -0.48 -15.64 16 19 C -0.22 -6.18 10.27 -15.06 -0.15 -6.33 16 20 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 21 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 22 N -0.92 -27.23 10.29 55.49 0.57 -26.66 16 23 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 C -0.01 -0.06 11.94 29.90 0.36 0.30 16 28 O -0.23 -2.66 10.20 -17.77 -0.18 -2.84 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.12 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.09 1.25 6.99 -51.93 -0.36 0.89 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.23 8.02 -51.93 -0.42 0.81 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.06 1.29 7.42 -51.93 -0.39 0.91 16 40 H 0.04 0.99 7.60 -51.93 -0.39 0.60 16 41 H 0.05 1.47 7.25 -51.93 -0.38 1.09 16 42 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.23 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 346.24 15.07 5.22 5.22 Total: -1.00 -33.13 346.24 -6.65 -39.79 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -5.98 Total: 0.51 kcal Atomic # 6 Polarization: 12.80 SS G_CDS: 0.13 Total: 12.93 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: -0.46 Total: -59.77 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.53 Total: -15.91 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.13 -6.65 -39.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049621132.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.809 kcal (2) G-P(sol) polarization free energy of solvation -33.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds