Wall clock time and date at job start Tue Mar 31 2020 13:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35348 * 117.00162 * 2 1 4 4 N 1.30554 * 125.44761 * 180.34588 * 3 2 1 5 5 C 1.36330 * 108.38600 * 180.17020 * 4 3 2 6 6 C 1.47362 * 126.41445 * 179.82822 * 5 4 3 7 7 O 1.21626 * 119.99770 * 186.74873 * 6 5 4 8 8 N 1.34771 * 120.00119 * 6.74727 * 6 5 4 9 9 C 1.45739 * 117.75885 * 177.87307 * 8 6 5 10 10 C 1.53060 * 109.55286 * 218.88945 * 9 8 6 11 11 C 1.52938 * 108.49056 * 306.18943 * 10 9 8 12 12 C 1.52926 * 109.74327 * 66.02848 * 11 10 9 13 13 H 1.08998 * 110.50491 * 66.07763 * 12 11 10 14 14 C 1.44193 * 117.75774 * 357.89228 * 8 6 5 15 15 H 1.09000 * 109.22572 * 27.38609 * 14 8 6 16 16 C 1.54065 * 111.76354 * 266.48756 * 14 8 6 17 17 C 1.54048 * 103.74499 * 206.75286 * 16 14 8 18 18 N 1.46885 * 107.71144 * 17.12607 * 17 16 14 19 19 C 1.36936 * 125.58634 * 182.96605 * 18 17 16 20 20 H 1.07999 * 120.00250 * 179.97438 * 19 18 17 21 21 C 1.38818 * 119.99554 * 359.97391 * 19 18 17 22 22 N 1.31608 * 120.00177 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99571 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47351 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46932 * 120.00127 * 23 21 19 26 26 H 1.48502 * 109.47285 * 239.99959 * 23 21 19 27 27 C 1.35925 * 107.17179 * 359.56670 * 5 4 3 28 28 O 1.34203 * 125.44612 * 0.03720 * 3 2 1 29 29 H 1.08993 * 109.47353 * 59.99243 * 1 2 3 30 30 H 1.09001 * 109.47461 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46687 * 299.99096 * 1 2 3 32 32 H 1.08999 * 109.45465 * 98.86638 * 9 8 6 33 33 H 1.08999 * 109.44171 * 338.90643 * 9 8 6 34 34 H 1.08996 * 109.63142 * 186.48395 * 10 9 8 35 35 H 1.09003 * 109.79741 * 65.98319 * 10 9 8 36 36 H 1.09002 * 109.41696 * 186.09718 * 11 10 9 37 37 H 1.09004 * 109.41656 * 305.96480 * 11 10 9 38 38 H 1.09004 * 110.57106 * 325.31766 * 16 14 8 39 39 H 1.08999 * 110.56861 * 88.18466 * 16 14 8 40 40 H 1.09004 * 109.81638 * 136.67472 * 17 16 14 41 41 H 1.09006 * 109.81515 * 257.50754 * 17 16 14 42 42 H 0.97004 * 120.00294 * 179.97438 * 22 21 19 43 43 H 1.07993 * 126.45764 * 180.25901 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2059 0.0000 4 7 3.3349 1.3977 -0.0064 5 6 3.5702 2.7405 -0.0002 6 6 4.8893 3.3974 -0.0005 7 8 4.9677 4.6042 0.1292 8 7 6.0088 2.6611 -0.1447 9 6 7.2840 3.3654 -0.1856 10 6 8.2005 2.7061 -1.2191 11 6 8.2983 1.2139 -0.8988 12 6 6.9358 0.5509 -1.1054 13 1 6.6558 0.5736 -2.1585 14 6 5.8628 1.2303 -0.2483 15 1 4.8842 0.9989 -0.6687 16 6 5.9998 0.5413 1.1229 17 6 6.5031 -0.8722 0.7737 18 7 7.0229 -0.8348 -0.5996 19 6 7.5083 -1.9084 -1.2974 20 1 7.8691 -1.7779 -2.3070 21 6 7.5366 -3.1645 -0.7071 22 7 7.0965 -3.3236 0.5230 23 14 8.1995 -4.6289 -1.6587 24 1 8.6296 -4.1877 -3.0099 25 1 9.3604 -5.2057 -0.9341 26 1 7.1362 -5.6574 -1.7884 27 6 2.3603 3.3600 0.0006 28 8 1.4227 2.3958 0.0007 29 1 -0.3634 0.5139 -0.8898 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 7.7544 3.3222 0.7968 33 1 7.1149 4.4062 -0.4617 34 1 9.1916 3.1570 -1.1702 35 1 7.7863 2.8398 -2.2185 36 1 9.0312 0.7490 -1.5583 37 1 8.6103 1.0854 0.1376 38 1 6.7275 1.0645 1.7434 39 1 5.0334 0.4908 1.6244 40 1 7.2974 -1.1620 1.4615 41 1 5.6801 -1.5840 0.8390 42 1 7.1160 -4.2013 0.9354 43 1 2.1850 4.4256 0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049621132.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:51 Heat of formation + Delta-G solvation = -10.339699 kcal Electronic energy + Delta-G solvation = -28701.554891 eV Core-core repulsion = 24750.190413 eV Total energy + Delta-G solvation = -3951.364478 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.55133 -41.64870 -39.82714 -39.42645 -36.62276 -36.23623 -34.12641 -33.93289 -31.22187 -30.72152 -29.88519 -28.29706 -26.59229 -26.36803 -24.61816 -23.83329 -22.91103 -22.07497 -21.64822 -20.33190 -19.17960 -18.69976 -18.59869 -18.26209 -17.45348 -16.99053 -16.74027 -16.44984 -16.25263 -16.03040 -15.89949 -15.45407 -15.03851 -14.83735 -14.62344 -14.28718 -14.10116 -13.74907 -13.51158 -13.14864 -13.06753 -12.96169 -12.78256 -12.66512 -12.30470 -12.27176 -12.12854 -11.98707 -11.83314 -11.76534 -11.58556 -11.46890 -11.34869 -10.66155 -10.55650 -9.86369 -9.49702 -8.84554 -7.78864 -5.14841 0.05004 0.90312 0.92394 1.47500 1.48601 1.58771 1.74937 1.98316 2.14772 2.52501 3.14486 3.38689 3.66177 3.78804 3.89389 3.95731 4.05458 4.12007 4.19865 4.21744 4.24308 4.26145 4.36910 4.48927 4.60016 4.64573 4.66417 4.67843 4.78068 4.90650 5.04602 5.05663 5.08242 5.16644 5.39715 5.48728 5.58017 5.62985 5.71853 5.77032 5.82242 6.20001 6.27566 6.53649 7.00046 7.14593 7.81462 8.46903 9.31267 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011542 B = 0.005222 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.442557 B = 5360.680716 C = 7328.419503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.263 6.263 3 C 0.379 3.621 4 N -0.479 5.479 5 C -0.083 4.083 6 C 0.596 3.404 7 O -0.557 6.557 8 N -0.571 5.571 9 C 0.111 3.889 10 C -0.117 4.117 11 C -0.123 4.123 12 C 0.154 3.846 13 H 0.048 0.952 14 C 0.124 3.876 15 H 0.134 0.866 16 C -0.123 4.123 17 C 0.200 3.800 18 N -0.611 5.611 19 C -0.231 4.231 20 H 0.083 0.917 21 C -0.066 4.066 22 N -0.952 5.952 23 Si 0.976 3.024 24 H -0.265 1.265 25 H -0.294 1.294 26 H -0.293 1.293 27 C 0.037 3.963 28 O -0.213 6.213 29 H 0.080 0.920 30 H 0.138 0.862 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.044 0.956 38 H 0.054 0.946 39 H 0.066 0.934 40 H 0.001 0.999 41 H 0.014 0.986 42 H 0.245 0.755 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.607 14.766 -1.656 19.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.171 6.171 3 C 0.134 3.866 4 N -0.225 5.225 5 C -0.200 4.200 6 C 0.385 3.615 7 O -0.438 6.438 8 N -0.300 5.300 9 C -0.010 4.010 10 C -0.155 4.155 11 C -0.163 4.163 12 C 0.046 3.954 13 H 0.066 0.934 14 C 0.019 3.981 15 H 0.150 0.850 16 C -0.163 4.163 17 C 0.074 3.926 18 N -0.335 5.335 19 C -0.360 4.360 20 H 0.100 0.900 21 C -0.259 4.259 22 N -0.601 5.601 23 Si 0.805 3.195 24 H -0.189 1.189 25 H -0.221 1.221 26 H -0.221 1.221 27 C -0.036 4.036 28 O -0.104 6.104 29 H 0.099 0.901 30 H 0.156 0.844 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.019 0.981 41 H 0.032 0.968 42 H 0.054 0.946 43 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -12.075 14.397 -1.584 18.857 hybrid contribution -0.168 -1.095 -0.014 1.107 sum -12.242 13.302 -1.598 18.149 Atomic orbital electron populations 1.23682 0.72683 1.07495 1.04067 1.86486 1.26254 1.15503 1.88866 1.23788 0.85718 0.80182 0.96945 1.71324 1.10065 1.16110 1.25012 1.21635 0.96298 0.88520 1.13597 1.17014 0.82629 0.85507 0.76396 1.90761 1.86919 1.13356 1.52732 1.46989 1.06787 1.06720 1.69454 1.21546 0.82422 0.97013 1.00017 1.21776 1.00617 0.94369 0.98779 1.21953 0.98123 0.95503 1.00719 1.21141 0.93811 0.84641 0.95778 0.93399 1.21768 1.02334 0.77812 0.96173 0.84976 1.22639 1.00157 0.96357 0.97136 1.20623 0.94928 0.91773 0.85273 1.44715 1.73115 1.03372 1.12346 1.19428 1.33111 0.86619 0.96879 0.89962 1.25611 1.02516 1.00148 0.97599 1.70216 1.53539 1.21997 1.14350 0.85036 0.77015 0.79327 0.78121 1.18932 1.22106 1.22050 1.25587 0.83560 0.94721 0.99736 1.84421 1.39144 1.15352 1.71447 0.90145 0.84399 0.90135 0.91587 0.88060 0.88091 0.91093 0.92928 0.93702 0.92698 0.91537 0.98105 0.96794 0.94566 0.71032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 10.73 113.37 1.22 1.40 16 2 O -0.26 -6.75 10.55 -64.16 -0.68 -7.43 16 3 C 0.38 10.40 8.98 130.43 1.17 11.57 16 4 N -0.48 -15.85 6.83 -419.39 -2.86 -18.72 16 5 C -0.08 -2.41 6.60 40.31 0.27 -2.14 16 6 C 0.60 18.89 7.58 86.65 0.66 19.55 16 7 O -0.56 -18.09 16.13 -4.11 -0.07 -18.16 16 8 N -0.57 -18.82 2.80 -806.39 -2.26 -21.08 16 9 C 0.11 3.12 6.24 86.54 0.54 3.66 16 10 C -0.12 -3.17 6.10 30.59 0.19 -2.98 16 11 C -0.12 -4.52 5.31 30.55 0.16 -4.36 16 12 C 0.15 6.55 3.30 44.80 0.15 6.70 16 13 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 14 C 0.12 4.81 2.30 45.85 0.11 4.92 16 15 H 0.13 5.45 4.37 -23.89 -0.10 5.34 16 16 C -0.12 -5.23 6.29 31.31 0.20 -5.04 16 17 C 0.20 10.56 5.39 86.66 0.47 11.03 16 18 N -0.61 -32.29 2.94 -671.75 -1.97 -34.27 16 19 C -0.23 -13.18 10.27 84.04 0.86 -12.31 16 20 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 21 C -0.07 -3.84 5.49 84.87 0.47 -3.37 16 22 N -0.95 -58.86 10.29 21.65 0.22 -58.64 16 23 Si 0.98 46.69 29.55 68.60 2.03 48.72 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 25 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 26 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 27 C 0.04 0.74 11.94 67.28 0.80 1.54 16 28 O -0.21 -4.42 10.20 18.84 0.19 -4.23 16 29 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.14 1.21 8.14 -2.39 -0.02 1.20 16 31 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.10 2.61 6.99 -2.39 -0.02 2.60 16 34 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.04 1.79 8.02 -2.38 -0.02 1.77 16 38 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 39 H 0.07 2.78 7.42 -2.39 -0.02 2.76 16 40 H 0.00 0.05 7.60 -2.38 -0.02 0.03 16 41 H 0.01 0.83 7.25 -2.38 -0.02 0.81 16 42 H 0.24 14.71 8.31 -92.71 -0.77 13.94 16 43 H 0.27 3.00 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -74.74 346.24 2.79 -71.95 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.94 Total: 11.68 kcal Atomic # 6 Polarization: 22.92 SS G_CDS: 7.25 Total: 30.17 kcal Atomic # 7 Polarization: -125.83 SS G_CDS: -6.87 Total: -132.70 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -0.55 Total: -29.82 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -74.74 2.79 -71.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049621132.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.614 kcal (2) G-P(sol) polarization free energy of solvation -74.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds