Wall clock time and date at job start Tue Mar 31 2020 13:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35358 * 116.99722 * 2 1 4 4 N 1.30554 * 125.44711 * 180.02562 * 3 2 1 5 5 C 1.36324 * 108.38183 * 179.97438 * 4 3 2 6 6 C 1.47374 * 126.40902 * 179.97438 * 5 4 3 7 7 O 1.21624 * 119.99686 * 187.55446 * 6 5 4 8 8 N 1.34774 * 119.99913 * 7.56131 * 6 5 4 9 9 C 1.46801 * 119.51946 * 186.71610 * 8 6 5 10 10 C 1.53430 * 107.32041 * 232.83688 * 9 8 6 11 11 C 1.52729 * 107.91166 * 300.85665 * 10 9 8 12 12 C 1.52962 * 110.88192 * 64.54609 * 11 10 9 13 13 H 1.08998 * 111.91601 * 70.37614 * 12 11 10 14 14 C 1.55028 * 107.60069 * 194.02951 * 12 11 10 15 15 N 1.47096 * 107.12641 * 92.89968 * 14 12 11 16 16 C 1.36936 * 125.65000 * 180.17410 * 15 14 12 17 17 H 1.08003 * 119.99404 * 0.02562 * 16 15 14 18 18 C 1.38811 * 120.00510 * 179.97438 * 16 15 14 19 19 N 1.31626 * 119.99684 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00143 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.46977 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46781 * 120.00392 * 20 18 16 23 23 H 1.48497 * 109.46869 * 240.00242 * 20 18 16 24 24 C 1.47680 * 108.70753 * 0.16077 * 15 14 12 25 25 C 1.45021 * 119.52437 * 6.99404 * 8 6 5 26 26 H 1.08996 * 109.86282 * 12.53345 * 25 8 6 27 27 C 1.35917 * 107.17789 * 0.02562 * 5 4 3 28 28 O 1.34207 * 125.44576 * 0.30768 * 3 2 1 29 29 H 1.09004 * 109.47362 * 300.00007 * 1 2 3 30 30 H 1.08999 * 109.47226 * 60.00511 * 1 2 3 31 31 H 1.09002 * 109.46850 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.84461 * 351.51597 * 9 8 6 33 33 H 1.09001 * 109.83874 * 112.49523 * 9 8 6 34 34 H 1.09000 * 109.33563 * 181.61663 * 10 9 8 35 35 H 1.08990 * 110.53113 * 60.78685 * 10 9 8 36 36 H 1.09002 * 109.19767 * 304.18034 * 11 10 9 37 37 H 1.09002 * 109.15995 * 184.88277 * 11 10 9 38 38 H 1.08999 * 109.90466 * 212.27418 * 14 12 11 39 39 H 1.08995 * 109.90486 * 333.34161 * 14 12 11 40 40 H 0.97005 * 119.99695 * 179.97438 * 19 18 16 41 41 H 1.08999 * 110.44871 * 264.74455 * 24 15 14 42 42 H 1.09001 * 110.45129 * 142.20277 * 24 15 14 43 43 H 1.07995 * 126.45283 * 180.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2061 0.0000 4 7 3.3348 1.3979 -0.0005 5 6 3.5699 2.7407 -0.0009 6 6 4.8891 3.3978 -0.0009 7 8 4.9678 4.6036 0.1372 8 7 6.0081 2.6625 -0.1542 9 6 7.3206 3.3030 -0.0051 10 6 8.1331 2.9784 -1.2655 11 6 8.2472 1.4592 -1.3724 12 6 6.8729 0.8229 -1.5872 13 1 6.4765 1.0362 -2.5799 14 6 7.0154 -0.6990 -1.3291 15 7 6.6811 -0.9319 0.0843 16 6 6.6879 -2.1466 0.7165 17 1 6.9560 -3.0384 0.1694 18 6 6.3514 -2.2316 2.0605 19 7 6.0252 -1.1446 2.7272 20 14 6.3614 -3.8886 2.9229 21 1 6.7610 -4.9456 1.9594 22 1 7.3288 -3.8545 4.0490 23 1 5.0030 -4.1826 3.4458 24 6 6.3372 0.3614 0.7090 25 6 5.8983 1.2513 -0.4699 26 1 4.8746 1.0153 -0.7603 27 6 2.3601 3.3601 0.0000 28 8 1.4226 2.3959 0.0059 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 7.1981 4.3832 0.0755 33 1 7.8207 2.9191 0.8841 34 1 9.1275 3.4159 -1.1764 35 1 7.6368 3.3725 -2.1522 36 1 8.6842 1.0670 -0.4540 37 1 8.8940 1.2073 -2.2129 38 1 6.3264 -1.2501 -1.9691 39 1 8.0395 -1.0149 -1.5280 40 1 5.7897 -1.2041 3.6664 41 1 7.2088 0.7886 1.2048 42 1 5.5181 0.2364 1.4173 43 1 2.1848 4.4257 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050103021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:55 Heat of formation + Delta-G solvation = 11.851396 kcal Electronic energy + Delta-G solvation = -28919.960921 eV Core-core repulsion = 24969.558721 eV Total energy + Delta-G solvation = -3950.402200 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.34603 -40.07914 -38.73567 -37.90378 -34.96833 -34.88371 -32.73758 -31.89847 -30.01395 -29.17314 -27.47840 -27.14369 -25.72688 -24.41556 -23.08078 -22.58315 -21.58105 -20.55552 -19.82814 -19.18179 -17.61630 -17.43082 -16.88803 -16.76833 -16.39478 -15.59673 -15.20248 -15.17761 -14.75561 -14.61874 -14.23760 -13.77489 -13.73046 -13.49665 -13.04293 -12.86332 -12.36000 -12.24343 -12.13986 -11.91455 -11.88119 -11.53555 -11.02445 -10.97636 -10.85301 -10.77026 -10.68043 -10.32463 -10.18740 -10.06411 -9.93608 -9.70385 -9.60666 -9.10105 -8.60687 -8.49301 -8.00831 -6.69579 -5.53221 -2.94544 1.22340 2.01673 2.23121 2.83322 3.33427 3.45525 3.50597 3.51858 3.53238 4.49092 4.59439 4.78512 4.88164 4.97675 5.07039 5.15953 5.29429 5.29931 5.34524 5.49358 5.58693 5.59810 5.72621 5.75907 5.82499 5.95800 6.02248 6.13083 6.27048 6.30363 6.38224 6.39914 6.58362 6.73760 6.76278 6.93663 6.96701 7.16588 7.50328 7.66695 7.74091 7.95751 8.04036 8.42233 8.51293 9.32452 9.94279 10.59234 11.50034 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.009136 B = 0.006645 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3063.946831 B = 4212.901503 C = 6353.117160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.236 6.236 3 C 0.378 3.622 4 N -0.426 5.426 5 C -0.039 4.039 6 C 0.600 3.400 7 O -0.553 6.553 8 N -0.567 5.567 9 C 0.109 3.891 10 C -0.129 4.129 11 C -0.112 4.112 12 C -0.110 4.110 13 H 0.072 0.928 14 C 0.142 3.858 15 N -0.599 5.599 16 C -0.218 4.218 17 H 0.077 0.923 18 C -0.010 4.010 19 N -0.916 5.916 20 Si 0.910 3.090 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C 0.163 3.837 25 C 0.087 3.913 26 H 0.138 0.862 27 C -0.010 4.010 28 O -0.230 6.230 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.021 0.979 39 H 0.024 0.976 40 H 0.249 0.751 41 H 0.007 0.993 42 H 0.112 0.888 43 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.190 8.577 -8.172 14.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.144 6.144 3 C 0.133 3.867 4 N -0.171 5.171 5 C -0.158 4.158 6 C 0.387 3.613 7 O -0.433 6.433 8 N -0.295 5.295 9 C -0.013 4.013 10 C -0.167 4.167 11 C -0.149 4.149 12 C -0.130 4.130 13 H 0.090 0.910 14 C 0.016 3.984 15 N -0.325 5.325 16 C -0.347 4.347 17 H 0.095 0.905 18 C -0.205 4.205 19 N -0.565 5.565 20 Si 0.742 3.258 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.219 1.219 24 C 0.038 3.962 25 C -0.017 4.017 26 H 0.155 0.845 27 C -0.082 4.082 28 O -0.122 6.122 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.135 0.865 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.039 0.961 39 H 0.042 0.958 40 H 0.060 0.940 41 H 0.025 0.975 42 H 0.130 0.870 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -7.721 8.329 -7.889 13.828 hybrid contribution -0.640 -0.501 0.542 0.977 sum -8.360 7.828 -7.347 13.607 Atomic orbital electron populations 1.23256 0.75755 1.05504 1.02555 1.86504 1.23089 1.15714 1.89063 1.23837 0.85895 0.79297 0.97673 1.71503 1.08348 1.14685 1.22578 1.21726 0.95716 0.88641 1.09670 1.16779 0.82185 0.85471 0.76883 1.90758 1.86576 1.13133 1.52812 1.47323 1.05051 1.10549 1.66587 1.21762 0.82588 0.98778 0.98135 1.21857 0.99792 0.97239 0.97812 1.21518 0.96834 0.94193 1.02374 1.22455 0.95517 0.96887 0.98151 0.90981 1.21466 0.97263 0.91633 0.88075 1.44393 1.79604 1.03938 1.04579 1.19074 1.38829 0.84374 0.92383 0.90516 1.24759 1.02125 0.97125 0.96538 1.69853 1.52675 1.25383 1.08572 0.86054 0.77119 0.83190 0.79480 1.20617 1.21971 1.21904 1.21899 0.99763 0.82582 0.91974 1.23074 1.02857 0.78133 0.97658 0.84489 1.24785 0.85038 0.93558 1.04850 1.84356 1.39700 1.16006 1.72147 0.91610 0.91717 0.86475 0.89244 0.90636 0.91166 0.91769 0.90923 0.92524 0.96086 0.95794 0.94033 0.97517 0.87037 0.75119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.73 101.05 1.08 1.30 16 2 O -0.24 -3.56 10.55 -40.99 -0.43 -3.99 16 3 C 0.38 6.17 8.98 52.22 0.47 6.64 16 4 N -0.43 -8.18 7.87 -11.71 -0.09 -8.27 16 5 C -0.04 -0.67 6.60 -82.99 -0.55 -1.22 16 6 C 0.60 11.15 7.63 -12.54 -0.10 11.05 16 7 O -0.55 -10.58 16.22 5.26 0.09 -10.49 16 8 N -0.57 -10.61 2.73 -166.52 -0.45 -11.06 16 9 C 0.11 1.79 6.18 -3.66 -0.02 1.77 16 10 C -0.13 -1.83 6.12 -26.65 -0.16 -2.00 16 11 C -0.11 -1.82 4.67 -26.89 -0.13 -1.94 16 12 C -0.11 -2.03 3.56 -88.87 -0.32 -2.35 16 13 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 14 C 0.14 3.05 6.63 -2.65 -0.02 3.03 16 15 N -0.60 -15.63 3.40 -169.88 -0.58 -16.21 16 16 C -0.22 -6.18 10.28 -15.06 -0.15 -6.33 16 17 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 18 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 19 N -0.92 -27.37 10.10 55.49 0.56 -26.81 16 20 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 24 C 0.16 4.10 5.06 -2.83 -0.01 4.09 16 25 C 0.09 1.79 2.54 -67.46 -0.17 1.62 16 26 H 0.14 2.96 4.29 -56.96 -0.24 2.72 16 27 C -0.01 -0.13 11.94 29.90 0.36 0.22 16 28 O -0.23 -3.10 10.20 -17.77 -0.18 -3.28 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 1.40 6.92 -51.93 -0.36 1.04 16 33 H 0.08 1.29 7.62 -51.93 -0.40 0.90 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.36 7.25 -51.93 -0.38 0.99 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.02 0.51 7.77 -51.93 -0.40 0.10 16 40 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.01 0.19 6.96 -51.93 -0.36 -0.17 16 42 H 0.11 3.23 5.94 -51.93 -0.31 2.92 16 43 H 0.23 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 344.43 15.07 5.19 5.19 Total: -1.00 -34.03 344.43 -6.54 -40.57 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -5.80 Total: 1.37 kcal Atomic # 6 Polarization: 15.32 SS G_CDS: 0.19 Total: 15.50 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: -0.56 Total: -62.35 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.53 Total: -17.77 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.03 -6.54 -40.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050103021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.424 kcal (2) G-P(sol) polarization free energy of solvation -34.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds