Wall clock time and date at job start Tue Mar 31 2020 13:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35358 * 116.99722 * 2 1 4 4 N 1.30554 * 125.44711 * 180.02562 * 3 2 1 5 5 C 1.36324 * 108.38183 * 179.97438 * 4 3 2 6 6 C 1.47374 * 126.40902 * 179.97438 * 5 4 3 7 7 O 1.21624 * 119.99686 * 187.55446 * 6 5 4 8 8 N 1.34774 * 119.99913 * 7.56131 * 6 5 4 9 9 C 1.46801 * 119.51946 * 186.71610 * 8 6 5 10 10 C 1.53430 * 107.32041 * 232.83688 * 9 8 6 11 11 C 1.52729 * 107.91166 * 300.85665 * 10 9 8 12 12 C 1.52962 * 110.88192 * 64.54609 * 11 10 9 13 13 H 1.08998 * 111.91601 * 70.37614 * 12 11 10 14 14 C 1.55028 * 107.60069 * 194.02951 * 12 11 10 15 15 N 1.47096 * 107.12641 * 92.89968 * 14 12 11 16 16 C 1.36936 * 125.65000 * 180.17410 * 15 14 12 17 17 H 1.08003 * 119.99404 * 0.02562 * 16 15 14 18 18 C 1.38811 * 120.00510 * 179.97438 * 16 15 14 19 19 N 1.31626 * 119.99684 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00143 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.46977 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46781 * 120.00392 * 20 18 16 23 23 H 1.48497 * 109.46869 * 240.00242 * 20 18 16 24 24 C 1.47680 * 108.70753 * 0.16077 * 15 14 12 25 25 C 1.45021 * 119.52437 * 6.99404 * 8 6 5 26 26 H 1.08996 * 109.86282 * 12.53345 * 25 8 6 27 27 C 1.35917 * 107.17789 * 0.02562 * 5 4 3 28 28 O 1.34207 * 125.44576 * 0.30768 * 3 2 1 29 29 H 1.09004 * 109.47362 * 300.00007 * 1 2 3 30 30 H 1.08999 * 109.47226 * 60.00511 * 1 2 3 31 31 H 1.09002 * 109.46850 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.84461 * 351.51597 * 9 8 6 33 33 H 1.09001 * 109.83874 * 112.49523 * 9 8 6 34 34 H 1.09000 * 109.33563 * 181.61663 * 10 9 8 35 35 H 1.08990 * 110.53113 * 60.78685 * 10 9 8 36 36 H 1.09002 * 109.19767 * 304.18034 * 11 10 9 37 37 H 1.09002 * 109.15995 * 184.88277 * 11 10 9 38 38 H 1.08999 * 109.90466 * 212.27418 * 14 12 11 39 39 H 1.08995 * 109.90486 * 333.34161 * 14 12 11 40 40 H 0.97005 * 119.99695 * 179.97438 * 19 18 16 41 41 H 1.08999 * 110.44871 * 264.74455 * 24 15 14 42 42 H 1.09001 * 110.45129 * 142.20277 * 24 15 14 43 43 H 1.07995 * 126.45283 * 180.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2061 0.0000 4 7 3.3348 1.3979 -0.0005 5 6 3.5699 2.7407 -0.0009 6 6 4.8891 3.3978 -0.0009 7 8 4.9678 4.6036 0.1372 8 7 6.0081 2.6625 -0.1542 9 6 7.3206 3.3030 -0.0051 10 6 8.1331 2.9784 -1.2655 11 6 8.2472 1.4592 -1.3724 12 6 6.8729 0.8229 -1.5872 13 1 6.4765 1.0362 -2.5799 14 6 7.0154 -0.6990 -1.3291 15 7 6.6811 -0.9319 0.0843 16 6 6.6879 -2.1466 0.7165 17 1 6.9560 -3.0384 0.1694 18 6 6.3514 -2.2316 2.0605 19 7 6.0252 -1.1446 2.7272 20 14 6.3614 -3.8886 2.9229 21 1 6.7610 -4.9456 1.9594 22 1 7.3288 -3.8545 4.0490 23 1 5.0030 -4.1826 3.4458 24 6 6.3372 0.3614 0.7090 25 6 5.8983 1.2513 -0.4699 26 1 4.8746 1.0153 -0.7603 27 6 2.3601 3.3601 0.0000 28 8 1.4226 2.3959 0.0059 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 7.1981 4.3832 0.0755 33 1 7.8207 2.9191 0.8841 34 1 9.1275 3.4159 -1.1764 35 1 7.6368 3.3725 -2.1522 36 1 8.6842 1.0670 -0.4540 37 1 8.8940 1.2073 -2.2129 38 1 6.3264 -1.2501 -1.9691 39 1 8.0395 -1.0149 -1.5280 40 1 5.7897 -1.2041 3.6664 41 1 7.2088 0.7886 1.2048 42 1 5.5181 0.2364 1.4173 43 1 2.1848 4.4257 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050103021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:54 Heat of formation + Delta-G solvation = -13.286089 kcal Electronic energy + Delta-G solvation = -28921.050964 eV Core-core repulsion = 24969.558721 eV Total energy + Delta-G solvation = -3951.492243 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.52775 -41.54421 -39.82693 -39.41781 -36.61991 -36.17270 -34.36354 -33.60121 -31.27742 -30.91641 -28.91294 -28.28756 -27.33937 -26.11640 -24.50372 -23.83646 -22.99021 -22.07768 -21.48365 -20.44961 -18.93892 -18.82167 -18.58329 -18.27759 -17.44469 -17.17714 -16.57408 -16.31039 -16.27755 -15.98097 -15.81111 -15.38688 -15.17689 -14.65077 -14.52930 -14.49183 -13.95036 -13.72928 -13.52237 -13.20012 -13.07387 -13.02482 -12.91952 -12.78602 -12.36104 -12.18379 -12.03792 -12.00398 -11.73170 -11.71039 -11.55873 -11.40789 -11.33743 -10.75774 -10.46777 -9.81304 -9.50033 -8.79381 -7.70347 -5.14874 0.05137 0.90082 0.94847 1.46000 1.47537 1.57792 1.76302 2.01719 2.16863 2.52703 3.18294 3.39143 3.72130 3.78790 3.83927 4.02108 4.04845 4.06259 4.15641 4.22225 4.25072 4.28598 4.38496 4.50943 4.57048 4.61669 4.62654 4.78640 4.88455 4.91655 4.97587 5.00826 5.06417 5.19457 5.28675 5.49611 5.52013 5.60705 5.62253 5.80268 5.94355 6.31272 6.40807 6.57008 7.01102 7.15286 7.83871 8.48364 9.30565 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.009136 B = 0.006645 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3063.946831 B = 4212.901503 C = 6353.117160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.263 6.263 3 C 0.378 3.622 4 N -0.475 5.475 5 C -0.084 4.084 6 C 0.598 3.402 7 O -0.562 6.562 8 N -0.574 5.574 9 C 0.104 3.896 10 C -0.116 4.116 11 C -0.107 4.107 12 C -0.101 4.101 13 H 0.100 0.900 14 C 0.137 3.863 15 N -0.619 5.619 16 C -0.232 4.232 17 H 0.082 0.918 18 C -0.068 4.068 19 N -0.945 5.945 20 Si 0.977 3.023 21 H -0.264 1.264 22 H -0.295 1.295 23 H -0.293 1.293 24 C 0.180 3.820 25 C 0.103 3.897 26 H 0.133 0.867 27 C 0.033 3.967 28 O -0.213 6.213 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.139 0.861 32 H 0.099 0.901 33 H 0.056 0.944 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.040 0.960 37 H 0.084 0.916 38 H 0.024 0.976 39 H 0.032 0.968 40 H 0.241 0.759 41 H -0.025 1.025 42 H 0.070 0.930 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.924 9.386 -9.967 16.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.171 6.171 3 C 0.132 3.868 4 N -0.221 5.221 5 C -0.202 4.202 6 C 0.387 3.613 7 O -0.443 6.443 8 N -0.302 5.302 9 C -0.018 4.018 10 C -0.154 4.154 11 C -0.145 4.145 12 C -0.120 4.120 13 H 0.119 0.881 14 C 0.011 3.989 15 N -0.346 5.346 16 C -0.361 4.361 17 H 0.100 0.900 18 C -0.260 4.260 19 N -0.595 5.595 20 Si 0.806 3.194 21 H -0.189 1.189 22 H -0.222 1.222 23 H -0.221 1.221 24 C 0.054 3.946 25 C -0.002 4.002 26 H 0.149 0.851 27 C -0.039 4.039 28 O -0.104 6.104 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.157 0.843 32 H 0.117 0.883 33 H 0.075 0.925 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.059 0.941 37 H 0.102 0.898 38 H 0.042 0.958 39 H 0.050 0.950 40 H 0.051 0.949 41 H -0.008 1.008 42 H 0.088 0.912 43 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -8.455 9.140 -9.720 15.796 hybrid contribution -0.512 -0.752 1.118 1.441 sum -8.967 8.388 -8.602 14.992 Atomic orbital electron populations 1.23683 0.72737 1.07503 1.04013 1.86493 1.26236 1.15429 1.88966 1.23716 0.85647 0.80216 0.97237 1.71294 1.10350 1.16157 1.24298 1.21697 0.96406 0.88598 1.13459 1.16979 0.82656 0.85464 0.76227 1.90732 1.86913 1.13284 1.53390 1.47361 1.06120 1.09789 1.66924 1.21903 0.82002 0.98982 0.98874 1.21811 1.01078 0.95573 0.96899 1.21466 0.95590 0.95557 1.01849 1.22475 0.96414 0.94535 0.98574 0.88142 1.21662 0.97438 0.94172 0.85604 1.44662 1.79748 1.03628 1.06529 1.19461 1.38170 0.85575 0.92889 0.90015 1.25610 1.02419 1.00578 0.97385 1.70152 1.53753 1.27360 1.08189 0.85018 0.76635 0.79516 0.78236 1.18877 1.22205 1.22062 1.21468 0.96700 0.83387 0.93077 1.22644 1.03080 0.78507 0.96013 0.85070 1.25582 0.83561 0.94710 1.00083 1.84404 1.39085 1.15303 1.71572 0.90640 0.89723 0.84291 0.88283 0.92535 0.88228 0.90267 0.94146 0.89752 0.95824 0.95019 0.94900 1.00761 0.91231 0.70906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 10.73 113.37 1.22 1.45 16 2 O -0.26 -7.93 10.55 -64.27 -0.68 -8.61 16 3 C 0.38 12.28 8.98 130.43 1.17 13.45 16 4 N -0.48 -18.63 7.87 -419.37 -3.30 -21.93 16 5 C -0.08 -2.89 6.60 40.31 0.27 -2.63 16 6 C 0.60 22.12 7.63 86.65 0.66 22.79 16 7 O -0.56 -20.94 16.22 -4.11 -0.07 -21.00 16 8 N -0.57 -21.63 2.73 -798.99 -2.18 -23.81 16 9 C 0.10 3.37 6.18 86.47 0.53 3.90 16 10 C -0.12 -3.02 6.12 30.65 0.19 -2.83 16 11 C -0.11 -3.32 4.67 30.49 0.14 -3.18 16 12 C -0.10 -3.61 3.56 -9.66 -0.03 -3.64 16 13 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 14 C 0.14 5.87 6.63 86.96 0.58 6.45 16 15 N -0.62 -33.39 3.40 -691.38 -2.35 -35.74 16 16 C -0.23 -13.47 10.28 84.03 0.86 -12.61 16 17 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 18 C -0.07 -3.98 5.49 84.86 0.47 -3.52 16 19 N -0.94 -59.19 10.10 21.65 0.22 -58.98 16 20 Si 0.98 47.38 29.55 68.60 2.03 49.41 16 21 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 23 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 24 C 0.18 9.51 5.06 86.52 0.44 9.95 16 25 C 0.10 4.30 2.54 46.09 0.12 4.42 16 26 H 0.13 5.82 4.29 -12.32 -0.05 5.76 16 27 C 0.03 0.82 11.94 67.28 0.80 1.62 16 28 O -0.21 -5.34 10.20 18.85 0.19 -5.15 16 29 H 0.07 1.07 8.14 -2.38 -0.02 1.06 16 30 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.10 3.01 6.92 -2.39 -0.02 2.99 16 33 H 0.06 2.02 7.62 -2.39 -0.02 2.00 16 34 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.04 1.52 7.25 -2.39 -0.02 1.50 16 37 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.03 1.32 7.77 -2.39 -0.02 1.30 16 40 H 0.24 14.77 8.31 -92.70 -0.77 13.99 16 41 H -0.03 -1.47 6.96 -2.39 -0.02 -1.49 16 42 H 0.07 4.30 5.94 -2.39 -0.01 4.28 16 43 H 0.28 4.09 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -78.13 344.43 2.27 -75.87 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 0.99 Total: 14.34 kcal Atomic # 6 Polarization: 28.19 SS G_CDS: 7.41 Total: 35.60 kcal Atomic # 7 Polarization: -132.85 SS G_CDS: -7.61 Total: -140.46 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -0.55 Total: -34.76 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Total: -78.13 2.27 -75.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050103021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.582 kcal (2) G-P(sol) polarization free energy of solvation -78.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds