Wall clock time and date at job start Tue Mar 31 2020 13:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 O 1.20926 * 124.56940 * 2 1 4 4 C 1.34165 * 112.19144 * 180.17566 * 3 2 1 5 5 C 1.48209 * 126.38437 * 179.82238 * 4 3 2 6 6 O 1.21490 * 120.00042 * 179.69051 * 5 4 3 7 7 N 1.34772 * 119.99612 * 359.69029 * 5 4 3 8 8 C 1.47671 * 134.45347 * 179.97438 * 7 5 4 9 9 C 1.53516 * 85.97810 * 204.29304 * 8 7 5 10 10 C 1.47671 * 134.46051 * 359.97323 * 7 5 4 11 11 C 1.52678 * 113.57151 * 91.01291 * 9 8 7 12 12 C 1.53341 * 109.10821 * 73.81618 * 11 9 8 13 13 N 1.46878 * 108.76222 * 52.40663 * 12 11 9 14 14 C 1.36942 * 120.46612 * 124.47515 * 13 12 11 15 15 H 1.07995 * 119.99541 * 331.55754 * 14 13 12 16 16 C 1.38808 * 119.99991 * 151.83908 * 14 13 12 17 17 N 1.31615 * 120.00070 * 342.22560 * 16 14 13 18 18 Si 1.86804 * 119.99766 * 162.22409 * 16 14 13 19 19 H 1.48496 * 109.46872 * 90.00294 * 18 16 14 20 20 H 1.48500 * 109.46904 * 210.00085 * 18 16 14 21 21 H 1.48496 * 109.47110 * 329.99821 * 18 16 14 22 22 C 1.46886 * 119.06696 * 304.73887 * 13 12 11 23 23 C 1.52669 * 113.56488 * 222.23108 * 9 8 7 24 24 C 1.36316 * 107.23107 * 359.56214 * 4 3 2 25 25 C 1.34831 * 124.56712 * 179.69196 * 2 1 3 26 26 O 1.21973 * 127.14806 * 359.97438 * 25 2 1 27 27 H 1.08997 * 109.47488 * 270.30846 * 1 2 3 28 28 H 1.09001 * 109.46946 * 30.30831 * 1 2 3 29 29 H 1.09004 * 109.47023 * 150.30511 * 1 2 3 30 30 H 1.09000 * 113.79635 * 90.03199 * 8 7 5 31 31 H 1.09001 * 113.79504 * 318.55683 * 8 7 5 32 32 H 1.08995 * 113.78886 * 41.42966 * 10 7 5 33 33 H 1.09006 * 113.78660 * 269.96578 * 10 7 5 34 34 H 1.08994 * 109.53131 * 313.92958 * 11 9 8 35 35 H 1.08993 * 109.58843 * 193.73888 * 11 9 8 36 36 H 1.09003 * 109.58965 * 292.62160 * 12 11 9 37 37 H 1.09003 * 109.58355 * 172.18623 * 12 11 9 38 38 H 0.97006 * 119.99997 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.58454 * 175.04273 * 22 13 12 40 40 H 1.08997 * 109.59165 * 295.47702 * 22 13 12 41 41 H 1.09002 * 109.53084 * 46.08145 * 23 9 8 42 42 H 1.09006 * 109.52715 * 166.22401 * 23 9 8 43 43 H 1.08002 * 127.99248 * 180.23357 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 8 2.1511 0.9958 0.0000 4 6 3.4615 0.7082 -0.0038 5 6 4.5760 1.6851 -0.0086 6 8 5.7264 1.2944 -0.0061 7 7 4.3133 3.0070 -0.0158 8 6 5.1455 4.2268 -0.0215 9 6 3.9314 4.9278 0.6038 10 6 3.0779 3.8159 -0.0211 11 6 3.9355 4.9102 2.1305 12 6 4.9862 5.9035 2.6411 13 7 4.7489 7.2083 2.0097 14 6 4.5668 8.3280 2.7768 15 1 4.1459 8.2411 3.7676 16 6 4.9176 9.5752 2.2786 17 7 5.7292 9.6671 1.2466 18 14 4.2379 11.1232 3.0731 19 1 5.1564 11.5707 4.1507 20 1 4.1171 12.1926 2.0498 21 1 2.8999 10.8368 3.6501 22 6 4.7040 7.2942 0.5441 23 6 3.6575 6.3114 0.0194 24 6 3.5769 -0.6501 0.0035 25 6 2.2299 -1.1103 0.0060 26 8 1.8473 -2.2684 0.0126 27 1 -0.3634 0.0055 1.0276 28 1 -0.3633 0.8872 -0.5186 29 1 -0.3633 -0.8927 -0.5091 30 1 5.3938 4.5852 -1.0206 31 1 6.0104 4.1722 0.6396 32 1 2.2999 3.4347 0.6402 33 1 2.7112 4.0520 -1.0201 34 1 4.1800 3.9081 2.4827 35 1 2.9519 5.1972 2.5019 36 1 5.9829 5.5473 2.3806 37 1 4.9017 6.0006 3.7235 38 1 5.9741 10.5387 0.8982 39 1 4.4337 8.3071 0.2456 40 1 5.6803 7.0380 0.1328 41 1 3.7120 6.2649 -1.0683 42 1 2.6640 6.6439 0.3205 43 1 4.4813 -1.2405 0.0066 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050501775.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:17 Heat of formation + Delta-G solvation = 57.047461 kcal Electronic energy + Delta-G solvation = -27611.397328 eV Core-core repulsion = 23662.954976 eV Total energy + Delta-G solvation = -3948.442352 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.24305 -41.96474 -39.83535 -39.38272 -37.55478 -35.40164 -34.27056 -33.42070 -32.31491 -31.46440 -29.63595 -28.30823 -27.37539 -26.00887 -24.76009 -24.16077 -23.83482 -22.44092 -20.85776 -19.61588 -19.51736 -19.24980 -18.45585 -17.99596 -17.53928 -16.90136 -16.77899 -16.39821 -16.09906 -15.63800 -15.48830 -15.20124 -15.01231 -14.97633 -14.82364 -14.63667 -14.20803 -13.98880 -13.91622 -13.65434 -13.35640 -13.04477 -12.98380 -12.92141 -12.53137 -12.26309 -12.09137 -11.80321 -11.76836 -11.40952 -11.33219 -11.22420 -11.13603 -10.95625 -10.45728 -9.91880 -9.69277 -8.60202 -7.83124 -5.27516 -0.64551 0.49455 1.33466 1.38988 1.49363 1.51874 1.60428 1.79498 2.07044 2.55204 3.08426 3.27259 3.41368 3.55059 3.72422 3.84069 3.85637 3.95862 4.21704 4.23454 4.32767 4.34856 4.50238 4.57326 4.61472 4.63104 4.66516 4.71193 4.75154 4.82864 4.84596 4.96770 5.07736 5.15714 5.22020 5.36793 5.41329 5.59565 5.71104 5.86880 6.32354 6.36586 6.45400 6.61100 6.82072 7.21653 7.93661 8.42875 9.22328 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.028105 B = 0.002801 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.031037 B = 9992.487002 C =10435.640957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.443 5.443 3 O 0.019 5.981 4 C 0.048 3.952 5 C 0.619 3.381 6 O -0.539 6.539 7 N -0.622 5.622 8 C 0.118 3.882 9 C -0.075 4.075 10 C 0.118 3.882 11 C -0.096 4.096 12 C 0.142 3.858 13 N -0.608 5.608 14 C -0.260 4.260 15 H 0.063 0.937 16 C -0.047 4.047 17 N -0.932 5.932 18 Si 0.960 3.040 19 H -0.290 1.290 20 H -0.293 1.293 21 H -0.270 1.270 22 C 0.174 3.826 23 C -0.110 4.110 24 C -0.250 4.250 25 C 0.470 3.530 26 O -0.564 6.564 27 H 0.098 0.902 28 H 0.125 0.875 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.122 0.878 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.010 0.990 37 H 0.049 0.951 38 H 0.249 0.751 39 H 0.054 0.946 40 H -0.002 1.002 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.323 -14.410 -5.417 19.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.204 5.204 3 O 0.007 5.993 4 C -0.012 4.012 5 C 0.405 3.595 6 O -0.418 6.418 7 N -0.354 5.354 8 C -0.003 4.003 9 C -0.076 4.076 10 C -0.003 4.003 11 C -0.135 4.135 12 C 0.017 3.983 13 N -0.332 5.332 14 C -0.390 4.390 15 H 0.081 0.919 16 C -0.243 4.243 17 N -0.578 5.578 18 Si 0.789 3.211 19 H -0.217 1.217 20 H -0.219 1.219 21 H -0.195 1.195 22 C 0.048 3.952 23 C -0.149 4.149 24 C -0.275 4.275 25 C 0.269 3.731 26 O -0.449 6.449 27 H 0.116 0.884 28 H 0.143 0.857 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.139 0.861 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.028 0.972 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.016 0.984 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -12.181 -15.063 -5.472 20.130 hybrid contribution 0.483 0.943 0.451 1.152 sum -11.698 -14.120 -5.021 19.011 Atomic orbital electron populations 1.22615 0.67815 1.07361 1.06225 1.46402 1.07152 0.99165 1.67663 1.84077 1.14634 1.20615 1.80000 1.23051 0.81854 0.95430 1.00836 1.16349 0.85073 0.80307 0.77795 1.90880 1.19921 1.78356 1.52623 1.50109 1.13501 1.02625 1.69145 1.23490 0.95994 0.78799 1.02012 1.21874 0.95136 0.94606 0.96002 1.23744 0.87766 0.85641 1.03172 1.21600 1.00371 0.98511 0.93016 1.20998 0.95224 0.85919 0.96210 1.44275 1.83352 1.03360 1.02174 1.19458 1.33866 0.85972 0.99748 0.91941 1.25696 0.98205 1.00750 0.99641 1.70171 1.35735 1.23366 1.28556 0.85389 0.78578 0.79813 0.77316 1.21721 1.21936 1.19460 1.20541 0.94223 0.97954 0.82474 1.21826 1.00175 0.93050 0.99869 1.23420 0.99907 0.93617 1.10529 1.18400 0.87168 0.85603 0.81895 1.90938 1.79674 1.17294 1.57006 0.88389 0.85683 0.87363 0.87588 0.91116 0.87776 0.86060 0.91571 0.90980 0.97222 0.93258 0.94177 0.92763 0.98359 0.89762 0.91544 0.78685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.72 11.22 127.77 1.43 2.15 16 2 N -0.44 -7.53 3.68 -492.75 -1.82 -9.34 16 3 O 0.02 0.32 9.49 70.44 0.67 0.99 16 4 C 0.05 1.01 7.19 24.47 0.18 1.18 16 5 C 0.62 15.45 8.07 86.89 0.70 16.15 16 6 O -0.54 -17.30 17.62 -3.69 -0.06 -17.36 16 7 N -0.62 -13.63 3.44 -845.46 -2.91 -16.54 16 8 C 0.12 2.91 7.62 86.32 0.66 3.57 16 9 C -0.08 -1.80 0.77 -52.04 -0.04 -1.84 16 10 C 0.12 1.92 7.10 86.31 0.61 2.54 16 11 C -0.10 -2.66 5.21 30.60 0.16 -2.50 16 12 C 0.14 5.36 6.38 86.42 0.55 5.91 16 13 N -0.61 -27.88 2.97 -699.68 -2.08 -29.96 16 14 C -0.26 -13.50 9.56 84.03 0.80 -12.70 16 15 H 0.06 3.19 7.89 -2.91 -0.02 3.17 16 16 C -0.05 -2.52 4.89 84.86 0.41 -2.11 16 17 N -0.93 -52.65 11.22 21.65 0.24 -52.40 16 18 Si 0.96 42.92 29.59 68.60 2.03 44.95 16 19 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 20 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 21 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 22 C 0.17 7.30 5.21 86.26 0.45 7.75 16 23 C -0.11 -3.10 5.24 30.44 0.16 -2.95 16 24 C -0.25 -5.67 10.94 22.84 0.25 -5.42 16 25 C 0.47 11.34 8.02 85.25 0.68 12.02 16 26 O -0.56 -17.41 17.84 -5.23 -0.09 -17.50 16 27 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.11 0.83 8.03 -2.38 -0.02 0.81 16 30 H 0.11 2.36 8.07 -2.39 -0.02 2.34 16 31 H 0.07 2.04 7.41 -2.39 -0.02 2.02 16 32 H 0.10 1.39 7.53 -2.39 -0.02 1.37 16 33 H 0.12 1.41 8.09 -2.38 -0.02 1.39 16 34 H 0.07 1.68 8.01 -2.39 -0.02 1.66 16 35 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.01 0.39 7.49 -2.39 -0.02 0.37 16 37 H 0.05 1.88 7.92 -2.39 -0.02 1.86 16 38 H 0.25 13.70 8.31 -92.70 -0.77 12.93 16 39 H 0.05 2.68 5.98 -2.39 -0.01 2.66 16 40 H 0.00 -0.08 8.07 -2.39 -0.02 -0.10 16 41 H 0.08 1.92 8.12 -2.39 -0.02 1.91 16 42 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 43 H 0.20 4.15 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -71.93 356.16 4.02 -67.92 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: 1.02 Total: 5.50 kcal Atomic # 6 Polarization: 16.74 SS G_CDS: 7.01 Total: 23.75 kcal Atomic # 7 Polarization: -101.69 SS G_CDS: -6.56 Total: -108.25 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: 0.51 Total: -33.88 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -71.93 4.02 -67.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050501775.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.963 kcal (2) G-P(sol) polarization free energy of solvation -71.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds