Wall clock time and date at job start Tue Mar 31 2020 13:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35681 * 117.00070 * 2 1 4 4 C 1.38890 * 119.62507 * 179.72256 * 3 2 1 5 5 C 1.39571 * 118.95021 * 180.27399 * 4 3 2 6 6 C 1.48165 * 120.89447 * 179.97438 * 5 4 3 7 7 O 1.21516 * 119.99640 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00336 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00076 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.46788 * 179.97438 * 9 8 6 11 11 H 1.09000 * 109.68100 * 299.99371 * 10 9 8 12 12 C 1.53300 * 109.67803 * 179.44234 * 10 9 8 13 13 O 1.42963 * 109.22422 * 187.97019 * 12 10 9 14 14 C 1.42964 * 114.16446 * 62.57769 * 13 12 10 15 15 C 1.53292 * 109.22818 * 297.42405 * 14 13 12 16 16 N 1.47144 * 109.68573 * 60.51838 * 10 9 8 17 17 C 1.36936 * 120.98108 * 350.23551 * 16 10 9 18 18 H 1.07993 * 120.00351 * 31.17719 * 17 16 10 19 19 C 1.38815 * 119.99931 * 211.17969 * 17 16 10 20 20 N 1.31617 * 120.00054 * 10.79487 * 19 17 16 21 21 Si 1.86801 * 120.00116 * 190.79467 * 19 17 16 22 22 H 1.48504 * 109.47172 * 59.99736 * 21 19 17 23 23 H 1.48493 * 109.47209 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47263 * 300.00051 * 21 19 17 25 25 C 1.39970 * 118.21672 * 0.02562 * 5 4 3 26 26 C 1.37973 * 119.13259 * 359.97438 * 25 5 4 27 27 N 1.31915 * 120.97717 * 0.02562 * 26 25 5 28 28 H 1.08991 * 109.47072 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46719 * 300.00359 * 1 2 3 30 30 H 1.08998 * 109.46668 * 59.99702 * 1 2 3 31 31 H 1.08003 * 120.52487 * 0.27877 * 4 3 2 32 32 H 0.96994 * 119.99664 * 359.97438 * 8 6 5 33 33 H 1.09009 * 109.46862 * 299.99530 * 9 8 6 34 34 H 1.08996 * 109.47277 * 59.99223 * 9 8 6 35 35 H 1.08992 * 109.51379 * 307.89762 * 12 10 9 36 36 H 1.09007 * 109.51001 * 68.04972 * 12 10 9 37 37 H 1.08997 * 109.51261 * 177.49510 * 14 13 12 38 38 H 1.09007 * 109.54763 * 57.37015 * 14 13 12 39 39 H 1.08996 * 109.67778 * 292.58002 * 15 14 13 40 40 H 1.08996 * 109.71356 * 172.04106 * 15 14 13 41 41 H 0.97003 * 120.00353 * 179.97438 * 20 19 17 42 42 H 1.07997 * 120.43086 * 179.97438 * 25 5 4 43 43 H 1.07995 * 119.51123 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 3.4325 1.2725 0.0058 5 6 4.0514 2.5235 0.0116 6 6 5.5284 2.6415 0.0185 7 8 6.2178 1.6408 0.0188 8 7 6.1072 3.8586 0.0246 9 6 7.5675 3.9753 0.0308 10 6 7.9609 5.4538 0.0362 11 1 7.5632 5.9428 -0.8530 12 6 9.4885 5.5814 0.0569 13 8 9.8437 6.9528 0.2490 14 6 9.4051 7.5022 1.4939 15 6 7.8734 7.4729 1.5469 16 7 7.4246 6.1050 1.2418 17 6 6.5336 5.4575 2.0555 18 1 6.5772 4.3833 2.1572 19 6 5.5744 6.1820 2.7497 20 7 5.3793 7.4532 2.4695 21 14 4.5603 5.3529 4.0815 22 1 5.4625 4.8416 5.1445 23 1 3.6128 6.3355 4.6661 24 1 3.7990 4.2222 3.4923 25 6 3.2395 3.6636 0.0118 26 6 1.8681 3.5116 0.0057 27 7 1.3179 2.3127 0.0004 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 4.0231 0.3683 0.0059 32 1 5.5568 4.6573 0.0240 33 1 7.9670 3.4893 0.9211 34 1 7.9742 3.4946 -0.8589 35 1 9.8928 4.9828 0.8730 36 1 9.8961 5.2291 -0.8907 37 1 9.7528 8.5316 1.5802 38 1 9.8092 6.9112 2.3158 39 1 7.4673 8.1655 0.8097 40 1 7.5345 7.7568 2.5432 41 1 4.7087 7.9594 2.9543 42 1 3.6806 4.6493 0.0166 43 1 1.2359 4.3871 0.0054 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050999260.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:49 Heat of formation + Delta-G solvation = -43.696430 kcal Electronic energy + Delta-G solvation = -27857.013164 eV Core-core repulsion = 23904.202229 eV Total energy + Delta-G solvation = -3952.810934 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.71986 -39.35734 -38.42073 -37.58784 -35.44237 -33.71920 -32.65724 -31.59145 -30.71592 -30.34509 -27.41426 -27.29162 -25.98916 -23.74569 -23.50654 -23.25005 -21.75035 -20.33061 -19.76059 -18.50372 -17.21010 -16.85477 -16.25061 -16.07434 -15.90973 -15.73821 -15.44796 -14.97891 -14.72335 -14.46272 -14.13859 -14.08832 -13.93855 -13.82515 -13.43660 -13.26167 -13.01941 -12.70114 -12.17372 -11.98127 -11.70280 -11.61872 -11.27179 -11.10631 -10.93612 -10.83475 -10.48531 -10.33166 -10.12484 -10.04837 -9.81149 -9.72430 -9.51686 -9.05322 -8.76377 -8.51447 -8.40718 -6.81357 -5.98990 -3.49310 0.83485 1.20459 2.94435 3.16176 3.24447 3.30557 3.34619 3.60868 3.97319 4.27065 4.31309 4.47739 4.82483 5.04235 5.08001 5.11666 5.15719 5.18602 5.21126 5.26834 5.49156 5.52836 5.65489 5.72774 5.78186 5.89675 5.95877 6.01526 6.10142 6.15309 6.19955 6.27592 6.32788 6.46130 6.66877 6.91789 7.00863 7.18116 7.42751 7.61800 7.79947 7.81187 8.01269 8.20741 8.59021 8.97400 9.57548 10.16876 11.06901 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015919 B = 0.004168 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.510700 B = 6715.450507 C = 7846.528049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.308 6.308 3 C 0.309 3.691 4 C -0.135 4.135 5 C -0.045 4.045 6 C 0.551 3.449 7 O -0.549 6.549 8 N -0.681 5.681 9 C 0.134 3.866 10 C 0.125 3.875 11 H 0.043 0.957 12 C 0.056 3.944 13 O -0.392 6.392 14 C 0.034 3.966 15 C 0.144 3.856 16 N -0.592 5.592 17 C -0.260 4.260 18 H 0.072 0.928 19 C 0.014 3.986 20 N -0.897 5.897 21 Si 0.892 3.108 22 H -0.283 1.283 23 H -0.288 1.288 24 H -0.279 1.279 25 C -0.168 4.168 26 C 0.134 3.866 27 N -0.530 5.530 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.152 0.848 32 H 0.417 0.583 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.041 0.959 39 H 0.030 0.970 40 H 0.092 0.908 41 H 0.257 0.743 42 H 0.150 0.850 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.240 -5.876 -5.524 9.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.215 6.215 3 C 0.130 3.870 4 C -0.157 4.157 5 C -0.056 4.056 6 C 0.336 3.664 7 O -0.429 6.429 8 N -0.333 5.333 9 C 0.010 3.990 10 C 0.017 3.983 11 H 0.060 0.940 12 C -0.023 4.023 13 O -0.310 6.310 14 C -0.044 4.044 15 C 0.019 3.981 16 N -0.318 5.318 17 C -0.389 4.389 18 H 0.090 0.910 19 C -0.186 4.186 20 N -0.541 5.541 21 Si 0.721 3.279 22 H -0.209 1.209 23 H -0.214 1.214 24 H -0.205 1.205 25 C -0.189 4.189 26 C -0.021 4.021 27 N -0.255 5.255 28 H 0.112 0.888 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.170 0.830 32 H 0.256 0.744 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.111 0.889 41 H 0.067 0.933 42 H 0.168 0.832 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -4.554 -6.664 -5.578 9.812 hybrid contribution -0.448 0.204 1.159 1.259 sum -5.003 -6.460 -4.419 9.289 Atomic orbital electron populations 1.22833 0.77392 1.02741 1.02435 1.86238 1.22749 1.24388 1.88145 1.19631 0.89010 0.84759 0.93606 1.21076 0.91735 0.99100 1.03787 1.20227 0.94364 0.93083 0.97889 1.18002 0.86541 0.84056 0.77804 1.90728 1.64138 1.36717 1.51310 1.45940 1.08307 1.07971 1.71062 1.21248 0.79851 0.96516 1.01340 1.21441 0.93391 0.91509 0.91916 0.93968 1.22860 0.95347 0.83551 1.00546 1.87808 1.78341 1.25735 1.39153 1.23354 0.98576 0.97310 0.85112 1.21419 0.88314 0.86119 1.02280 1.44085 1.50611 1.13891 1.23165 1.19184 1.07101 0.92122 1.20485 0.91011 1.25107 0.97076 0.96233 1.00204 1.69963 1.34810 1.07582 1.41703 0.86532 0.80142 0.78750 0.82479 1.20880 1.21398 1.20482 1.22364 0.94881 0.99805 1.01847 1.22352 0.92734 0.93447 0.93549 1.67151 1.41271 0.98948 1.18094 0.88766 0.92347 0.92342 0.83035 0.74370 0.91114 0.91876 0.93437 0.89838 0.90215 0.94097 0.95200 0.88937 0.93274 0.83212 0.81731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.38 101.05 1.05 1.47 16 2 O -0.31 -4.26 10.47 -18.74 -0.20 -4.45 16 3 C 0.31 4.74 7.49 -17.16 -0.13 4.61 16 4 C -0.14 -2.18 9.61 -38.84 -0.37 -2.56 16 5 C -0.04 -0.76 5.91 -104.67 -0.62 -1.37 16 6 C 0.55 10.23 7.80 -12.18 -0.09 10.14 16 7 O -0.55 -11.41 16.44 5.35 0.09 -11.32 16 8 N -0.68 -12.34 3.72 -61.15 -0.23 -12.56 16 9 C 0.13 2.37 4.45 -4.04 -0.02 2.35 16 10 C 0.12 2.31 3.21 -67.42 -0.22 2.09 16 11 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 12 C 0.06 0.95 6.29 37.31 0.23 1.18 16 13 O -0.39 -7.34 10.74 -35.23 -0.38 -7.72 16 14 C 0.03 0.64 6.98 37.31 0.26 0.90 16 15 C 0.14 3.13 5.38 -3.53 -0.02 3.12 16 16 N -0.59 -12.98 3.03 -164.31 -0.50 -13.48 16 17 C -0.26 -6.14 7.05 -15.06 -0.11 -6.24 16 18 H 0.07 1.75 5.81 -52.49 -0.30 1.44 16 19 C 0.01 0.34 5.06 -17.43 -0.09 0.25 16 20 N -0.90 -22.98 11.14 55.49 0.62 -22.36 16 21 Si 0.89 20.26 29.57 -169.99 -5.03 15.23 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 C -0.17 -2.58 9.61 -39.03 -0.38 -2.95 16 26 C 0.13 1.88 11.17 -17.61 -0.20 1.68 16 27 N -0.53 -7.89 9.18 -13.38 -0.12 -8.02 16 28 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 30 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 31 H 0.15 2.38 7.74 -52.48 -0.41 1.97 16 32 H 0.42 7.71 5.45 -40.82 -0.22 7.49 16 33 H 0.07 1.35 7.57 -51.92 -0.39 0.96 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 1.18 8.14 -51.92 -0.42 0.75 16 37 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.09 2.23 6.33 -51.93 -0.33 1.90 16 41 H 0.26 6.51 8.31 -40.82 -0.34 6.17 16 42 H 0.15 2.25 6.53 -52.49 -0.34 1.90 16 43 H 0.17 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 353.12 15.07 5.32 5.32 Total: -1.00 -28.81 353.12 -6.89 -35.70 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -5.78 Total: 9.00 kcal Atomic # 6 Polarization: 15.35 SS G_CDS: -0.69 Total: 14.66 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.23 Total: -56.42 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.49 Total: -23.50 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.03 Total: 15.23 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.81 -6.89 -35.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050999260.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.999 kcal (2) G-P(sol) polarization free energy of solvation -28.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds