Wall clock time and date at job start Tue Mar 31 2020 13:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35681 * 117.00070 * 2 1 4 4 C 1.38890 * 119.62507 * 179.72256 * 3 2 1 5 5 C 1.39571 * 118.95021 * 180.27399 * 4 3 2 6 6 C 1.48165 * 120.89447 * 179.97438 * 5 4 3 7 7 O 1.21516 * 119.99640 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00336 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00076 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.46788 * 179.97438 * 9 8 6 11 11 H 1.09000 * 109.68100 * 299.99371 * 10 9 8 12 12 C 1.53300 * 109.67803 * 179.44234 * 10 9 8 13 13 O 1.42963 * 109.22422 * 187.97019 * 12 10 9 14 14 C 1.42964 * 114.16446 * 62.57769 * 13 12 10 15 15 C 1.53292 * 109.22818 * 297.42405 * 14 13 12 16 16 N 1.47144 * 109.68573 * 60.51838 * 10 9 8 17 17 C 1.36936 * 120.98108 * 350.23551 * 16 10 9 18 18 H 1.07993 * 120.00351 * 31.17719 * 17 16 10 19 19 C 1.38815 * 119.99931 * 211.17969 * 17 16 10 20 20 N 1.31617 * 120.00054 * 10.79487 * 19 17 16 21 21 Si 1.86801 * 120.00116 * 190.79467 * 19 17 16 22 22 H 1.48504 * 109.47172 * 59.99736 * 21 19 17 23 23 H 1.48493 * 109.47209 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47263 * 300.00051 * 21 19 17 25 25 C 1.39970 * 118.21672 * 0.02562 * 5 4 3 26 26 C 1.37973 * 119.13259 * 359.97438 * 25 5 4 27 27 N 1.31915 * 120.97717 * 0.02562 * 26 25 5 28 28 H 1.08991 * 109.47072 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46719 * 300.00359 * 1 2 3 30 30 H 1.08998 * 109.46668 * 59.99702 * 1 2 3 31 31 H 1.08003 * 120.52487 * 0.27877 * 4 3 2 32 32 H 0.96994 * 119.99664 * 359.97438 * 8 6 5 33 33 H 1.09009 * 109.46862 * 299.99530 * 9 8 6 34 34 H 1.08996 * 109.47277 * 59.99223 * 9 8 6 35 35 H 1.08992 * 109.51379 * 307.89762 * 12 10 9 36 36 H 1.09007 * 109.51001 * 68.04972 * 12 10 9 37 37 H 1.08997 * 109.51261 * 177.49510 * 14 13 12 38 38 H 1.09007 * 109.54763 * 57.37015 * 14 13 12 39 39 H 1.08996 * 109.67778 * 292.58002 * 15 14 13 40 40 H 1.08996 * 109.71356 * 172.04106 * 15 14 13 41 41 H 0.97003 * 120.00353 * 179.97438 * 20 19 17 42 42 H 1.07997 * 120.43086 * 179.97438 * 25 5 4 43 43 H 1.07995 * 119.51123 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 3.4325 1.2725 0.0058 5 6 4.0514 2.5235 0.0116 6 6 5.5284 2.6415 0.0185 7 8 6.2178 1.6408 0.0188 8 7 6.1072 3.8586 0.0246 9 6 7.5675 3.9753 0.0308 10 6 7.9609 5.4538 0.0362 11 1 7.5632 5.9428 -0.8530 12 6 9.4885 5.5814 0.0569 13 8 9.8437 6.9528 0.2490 14 6 9.4051 7.5022 1.4939 15 6 7.8734 7.4729 1.5469 16 7 7.4246 6.1050 1.2418 17 6 6.5336 5.4575 2.0555 18 1 6.5772 4.3833 2.1572 19 6 5.5744 6.1820 2.7497 20 7 5.3793 7.4532 2.4695 21 14 4.5603 5.3529 4.0815 22 1 5.4625 4.8416 5.1445 23 1 3.6128 6.3355 4.6661 24 1 3.7990 4.2222 3.4923 25 6 3.2395 3.6636 0.0118 26 6 1.8681 3.5116 0.0057 27 7 1.3179 2.3127 0.0004 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 4.0231 0.3683 0.0059 32 1 5.5568 4.6573 0.0240 33 1 7.9670 3.4893 0.9211 34 1 7.9742 3.4946 -0.8589 35 1 9.8928 4.9828 0.8730 36 1 9.8961 5.2291 -0.8907 37 1 9.7528 8.5316 1.5802 38 1 9.8092 6.9112 2.3158 39 1 7.4673 8.1655 0.8097 40 1 7.5345 7.7568 2.5432 41 1 4.7087 7.9594 2.9543 42 1 3.6806 4.6493 0.0166 43 1 1.2359 4.3871 0.0054 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050999260.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:48 Heat of formation + Delta-G solvation = -64.200528 kcal Electronic energy + Delta-G solvation = -27857.902288 eV Core-core repulsion = 23904.202229 eV Total energy + Delta-G solvation = -3953.700059 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.92948 -40.76565 -39.88923 -38.73951 -36.99662 -35.37896 -33.98406 -33.14376 -32.19205 -31.65995 -29.01661 -28.32391 -27.39739 -25.27660 -24.99088 -24.42636 -23.26843 -21.69061 -21.35368 -19.83088 -18.52279 -18.34760 -17.67155 -17.48031 -17.11459 -17.07725 -16.75391 -16.37968 -16.25696 -16.16282 -15.51246 -15.43833 -15.28033 -15.10778 -14.91058 -14.65284 -14.41765 -14.26682 -13.56733 -13.20381 -13.12550 -12.88933 -12.74151 -12.70276 -12.50590 -12.22957 -12.15830 -11.99217 -11.84742 -11.46547 -11.26928 -11.08305 -10.82708 -10.63284 -10.55437 -9.95236 -9.65249 -8.61126 -7.86790 -5.37501 -0.43414 0.03031 1.40379 1.46386 1.49405 1.77058 1.84952 2.28625 2.44667 2.72375 3.04795 3.23112 3.29120 3.43811 3.56105 3.86041 3.91208 3.98530 4.10021 4.22963 4.33708 4.42784 4.43177 4.49277 4.57850 4.59536 4.64767 4.67800 4.70735 4.75017 4.78442 4.97670 5.02403 5.12661 5.19565 5.31705 5.45247 5.65296 5.69516 6.10898 6.31136 6.38058 6.53480 6.64408 7.10468 7.13073 7.76908 8.33399 9.17030 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015919 B = 0.004168 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.510700 B = 6715.450507 C = 7846.528049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.317 6.317 3 C 0.307 3.693 4 C -0.146 4.146 5 C -0.059 4.059 6 C 0.551 3.449 7 O -0.576 6.576 8 N -0.681 5.681 9 C 0.139 3.861 10 C 0.126 3.874 11 H 0.042 0.958 12 C 0.057 3.943 13 O -0.397 6.397 14 C 0.045 3.955 15 C 0.149 3.851 16 N -0.605 5.605 17 C -0.245 4.245 18 H 0.066 0.934 19 C -0.020 4.020 20 N -0.919 5.919 21 Si 0.934 3.066 22 H -0.292 1.292 23 H -0.292 1.292 24 H -0.279 1.279 25 C -0.173 4.173 26 C 0.140 3.860 27 N -0.530 5.530 28 H 0.125 0.875 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.149 0.851 32 H 0.415 0.585 33 H 0.055 0.945 34 H 0.087 0.913 35 H 0.049 0.951 36 H 0.119 0.881 37 H 0.104 0.896 38 H 0.042 0.958 39 H 0.009 0.991 40 H 0.066 0.934 41 H 0.252 0.748 42 H 0.151 0.849 43 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.493 -6.350 -6.229 9.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.224 6.224 3 C 0.128 3.872 4 C -0.168 4.168 5 C -0.070 4.070 6 C 0.337 3.663 7 O -0.457 6.457 8 N -0.331 5.331 9 C 0.015 3.985 10 C 0.020 3.980 11 H 0.059 0.941 12 C -0.022 4.022 13 O -0.315 6.315 14 C -0.033 4.033 15 C 0.024 3.976 16 N -0.331 5.331 17 C -0.375 4.375 18 H 0.083 0.917 19 C -0.217 4.217 20 N -0.565 5.565 21 Si 0.764 3.236 22 H -0.219 1.219 23 H -0.218 1.218 24 H -0.204 1.204 25 C -0.194 4.194 26 C -0.015 4.015 27 N -0.255 5.255 28 H 0.143 0.857 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.167 0.833 32 H 0.254 0.746 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.067 0.933 36 H 0.137 0.863 37 H 0.122 0.878 38 H 0.060 0.940 39 H 0.028 0.972 40 H 0.084 0.916 41 H 0.061 0.939 42 H 0.168 0.832 43 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -4.800 -7.154 -6.296 10.671 hybrid contribution -0.401 0.298 1.339 1.429 sum -5.201 -6.856 -4.957 9.931 Atomic orbital electron populations 1.23131 0.75342 1.04922 1.02529 1.86237 1.24777 1.23627 1.87758 1.19718 0.88890 0.85466 0.93078 1.21097 0.92384 0.98794 1.04528 1.20159 0.93450 0.94040 0.99309 1.18253 0.87320 0.83645 0.77057 1.90703 1.64953 1.37409 1.52661 1.45943 1.08548 1.07816 1.70782 1.21248 0.79673 0.95896 1.01711 1.21564 0.94610 0.91547 0.90282 0.94063 1.22994 0.93808 0.82854 1.02513 1.87813 1.78106 1.26657 1.38972 1.23221 0.95843 0.98873 0.85330 1.21243 0.90610 0.85694 1.00058 1.44274 1.50548 1.13968 1.24325 1.19187 1.06595 0.91767 1.19976 0.91669 1.25449 0.98123 0.96536 1.01612 1.70058 1.35479 1.08309 1.42610 0.85880 0.79040 0.77882 0.80838 1.21915 1.21793 1.20447 1.22426 0.95486 0.99283 1.02162 1.22880 0.92564 0.94214 0.91815 1.67268 1.41101 0.99062 1.18058 0.85654 0.92486 0.91935 0.83305 0.74601 0.92656 0.89504 0.93272 0.86344 0.87850 0.93956 0.97246 0.91562 0.93859 0.83163 0.78498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 10.38 113.37 1.18 1.81 16 2 O -0.32 -8.33 10.47 -89.99 -0.94 -9.27 16 3 C 0.31 9.12 7.49 84.80 0.63 9.75 16 4 C -0.15 -4.68 9.61 22.75 0.22 -4.46 16 5 C -0.06 -1.97 5.91 -19.90 -0.12 -2.09 16 6 C 0.55 20.42 7.80 86.88 0.68 21.10 16 7 O -0.58 -23.94 16.44 -3.77 -0.06 -24.00 16 8 N -0.68 -24.37 3.72 -465.66 -1.73 -26.10 16 9 C 0.14 4.73 4.45 86.38 0.38 5.11 16 10 C 0.13 4.51 3.21 44.97 0.14 4.65 16 11 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 12 C 0.06 1.78 6.29 72.08 0.45 2.23 16 13 O -0.40 -13.93 10.74 -148.98 -1.60 -15.53 16 14 C 0.05 1.61 6.98 72.08 0.50 2.11 16 15 C 0.15 6.49 5.38 86.35 0.46 6.95 16 16 N -0.61 -26.29 3.03 -673.75 -2.04 -28.34 16 17 C -0.25 -11.57 7.05 84.03 0.59 -10.98 16 18 H 0.07 3.17 5.81 -2.91 -0.02 3.15 16 19 C -0.02 -0.97 5.06 84.86 0.43 -0.54 16 20 N -0.92 -47.57 11.14 21.65 0.24 -47.33 16 21 Si 0.93 41.77 29.57 68.60 2.03 43.80 16 22 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 23 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 25 C -0.17 -5.14 9.61 22.63 0.22 -4.93 16 26 C 0.14 3.67 11.17 84.62 0.94 4.62 16 27 N -0.53 -14.88 9.18 -309.15 -2.84 -17.72 16 28 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.06 1.05 8.10 -2.39 -0.02 1.04 16 30 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 31 H 0.15 4.73 7.74 -2.91 -0.02 4.71 16 32 H 0.41 15.26 5.45 -92.71 -0.50 14.75 16 33 H 0.06 2.08 7.57 -2.38 -0.02 2.06 16 34 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.12 2.90 8.14 -2.38 -0.02 2.88 16 37 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 38 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 39 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.07 3.23 6.33 -2.39 -0.02 3.21 16 41 H 0.25 12.91 8.31 -92.71 -0.77 12.14 16 42 H 0.15 4.42 6.53 -2.91 -0.02 4.40 16 43 H 0.20 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -61.03 353.12 0.31 -60.72 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: 0.54 Total: 28.43 kcal Atomic # 6 Polarization: 28.61 SS G_CDS: 6.72 Total: 35.34 kcal Atomic # 7 Polarization: -113.11 SS G_CDS: -6.37 Total: -119.48 kcal Atomic # 8 Polarization: -46.20 SS G_CDS: -2.60 Total: -48.80 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -61.03 0.31 -60.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050999260.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.480 kcal (2) G-P(sol) polarization free energy of solvation -61.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds