Wall clock time and date at job start Tue Mar 31 2020 13:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35492 * 116.99947 * 2 1 4 4 C 1.39162 * 119.52485 * 180.02562 * 3 2 1 5 5 C 1.37959 * 119.26699 * 180.02562 * 4 3 2 6 6 C 1.40286 * 118.35380 * 0.02562 * 5 4 3 7 7 C 1.47615 * 120.49631 * 179.97438 * 6 5 4 8 8 O 1.21574 * 120.00159 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99861 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00037 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.47166 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.70596 * 59.91959 * 11 10 9 13 13 C 1.53293 * 109.68463 * 180.45429 * 11 10 9 14 14 O 1.42958 * 109.22674 * 172.02532 * 13 11 10 15 15 C 1.42960 * 114.16798 * 297.42035 * 14 13 11 16 16 C 1.53296 * 109.21817 * 62.58112 * 15 14 13 17 17 N 1.47151 * 109.68291 * 299.38361 * 11 10 9 18 18 C 1.36938 * 120.98223 * 10.01498 * 17 11 10 19 19 H 1.08002 * 119.99449 * 328.45786 * 18 17 11 20 20 C 1.38814 * 119.99804 * 148.46461 * 18 17 11 21 21 N 1.31620 * 119.99687 * 164.16424 * 20 18 17 22 22 Si 1.86793 * 120.00064 * 344.15633 * 20 18 17 23 23 H 1.48507 * 109.46884 * 85.82408 * 22 20 18 24 24 H 1.48496 * 109.47251 * 205.82100 * 22 20 18 25 25 H 1.48500 * 109.47595 * 325.82394 * 22 20 18 26 26 C 1.39525 * 119.00269 * 0.25082 * 6 5 4 27 27 N 1.31666 * 120.62985 * 359.47659 * 26 6 5 28 28 H 1.08997 * 109.47128 * 60.00510 * 1 2 3 29 29 H 1.09000 * 109.47459 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47032 * 300.00215 * 1 2 3 31 31 H 1.08004 * 120.36987 * 0.04380 * 4 3 2 32 32 H 1.07994 * 120.82772 * 180.02562 * 5 4 3 33 33 H 0.97000 * 119.99734 * 0.02562 * 9 7 6 34 34 H 1.09005 * 109.47236 * 59.99853 * 10 9 7 35 35 H 1.09003 * 109.47137 * 300.00041 * 10 9 7 36 36 H 1.09005 * 109.51128 * 52.10296 * 13 11 10 37 37 H 1.09003 * 109.51423 * 291.95192 * 13 11 10 38 38 H 1.08994 * 109.51379 * 302.65758 * 15 14 13 39 39 H 1.08998 * 109.55121 * 182.52876 * 15 14 13 40 40 H 1.09005 * 109.67743 * 187.97299 * 16 15 14 41 41 H 1.08994 * 109.71596 * 67.43978 * 16 15 14 42 42 H 0.96998 * 120.00148 * 179.97438 * 21 20 18 43 43 H 1.07998 * 119.68707 * 179.74977 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0442 1.2072 0.0000 4 6 3.4345 1.2686 -0.0005 5 6 4.0552 2.5006 0.0000 6 6 3.2525 3.6511 0.0016 7 6 3.8670 4.9933 0.0028 8 8 5.0773 5.1077 0.0020 9 7 3.0862 6.0919 0.0039 10 6 3.6959 7.4239 0.0045 11 6 2.5967 8.4880 0.0050 12 1 1.9748 8.3737 0.8930 13 6 3.2295 9.8842 -0.0058 14 8 2.2053 10.8639 -0.1925 15 6 1.5132 10.7569 -1.4388 16 6 0.7924 9.4054 -1.5013 17 7 1.7677 8.3449 -1.2023 18 6 1.8961 7.2542 -2.0203 19 1 2.8553 6.7693 -2.1271 20 6 0.7936 6.7719 -2.7122 21 7 0.9606 5.9419 -3.7200 22 14 -0.9270 7.3008 -2.2130 23 1 -1.2657 8.5811 -2.8849 24 1 -1.9025 6.2566 -2.6169 25 1 -0.9805 7.4852 -0.7405 26 6 1.8646 3.5076 0.0080 27 7 1.3138 2.3117 0.0020 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 4.0210 0.3617 -0.0017 32 1 5.1324 2.5775 -0.0008 33 1 2.1205 6.0005 0.0042 34 1 4.3141 7.5410 -0.8857 35 1 4.3148 7.5398 0.8943 36 1 3.9501 9.9510 -0.8209 37 1 3.7349 10.0622 0.9435 38 1 2.2275 10.8268 -2.2591 39 1 0.7839 11.5627 -1.5214 40 1 0.3807 9.2548 -2.4994 41 1 -0.0114 9.3830 -0.7655 42 1 0.1902 5.6046 -4.2033 43 1 1.2362 4.3859 0.0134 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051012804.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:58 Heat of formation + Delta-G solvation = -38.688025 kcal Electronic energy + Delta-G solvation = -27946.122205 eV Core-core repulsion = 23993.528452 eV Total energy + Delta-G solvation = -3952.593754 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.66817 -39.38103 -38.60733 -37.46763 -35.51883 -33.75825 -32.40301 -31.98294 -31.31536 -30.40471 -27.68559 -27.34567 -25.63865 -23.88650 -23.47870 -23.04841 -22.11058 -20.24055 -19.90389 -18.44090 -17.59873 -17.06300 -16.60199 -16.08279 -16.01179 -15.82716 -15.14866 -14.99656 -14.68209 -14.52468 -14.20827 -14.14263 -14.07285 -13.76683 -13.40016 -13.15488 -12.82943 -12.60954 -12.57602 -12.18875 -11.91695 -11.88873 -11.63796 -11.17681 -11.14845 -10.81703 -10.59128 -10.40308 -9.92391 -9.85867 -9.84306 -9.68746 -9.45259 -9.24410 -8.75136 -8.55076 -8.26679 -7.06969 -6.09407 -3.54674 0.92492 1.31458 3.04919 3.17242 3.23413 3.34801 3.37373 3.66080 4.09018 4.25732 4.32329 4.36047 4.60990 4.97747 5.01914 5.11700 5.15369 5.19787 5.29221 5.33808 5.38809 5.50979 5.59646 5.62292 5.68808 5.75004 5.85125 5.87216 5.91330 5.98372 6.08376 6.17889 6.27864 6.31860 6.40331 6.47125 6.67508 6.99542 7.17754 7.56093 7.76046 7.85020 8.10248 8.19694 8.71493 8.74265 9.52203 9.89868 11.04028 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014575 B = 0.004455 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.603328 B = 6283.523947 C = 7604.937614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.308 6.308 3 C 0.334 3.666 4 C -0.202 4.202 5 C 0.013 3.987 6 C -0.212 4.212 7 C 0.566 3.434 8 O -0.559 6.559 9 N -0.689 5.689 10 C 0.137 3.863 11 C 0.127 3.873 12 H 0.047 0.953 13 C 0.055 3.945 14 O -0.388 6.388 15 C 0.046 3.954 16 C 0.090 3.910 17 N -0.607 5.607 18 C -0.272 4.272 19 H 0.097 0.903 20 C 0.032 3.968 21 N -0.897 5.897 22 Si 0.880 3.120 23 H -0.286 1.286 24 H -0.303 1.303 25 H -0.271 1.271 26 C 0.191 3.809 27 N -0.542 5.542 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.059 0.941 31 H 0.145 0.855 32 H 0.152 0.848 33 H 0.410 0.590 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.089 0.911 38 H 0.052 0.948 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.033 0.967 42 H 0.264 0.736 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.767 -4.048 8.607 9.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.214 6.214 3 C 0.155 3.845 4 C -0.222 4.222 5 C -0.012 4.012 6 C -0.218 4.218 7 C 0.352 3.648 8 O -0.440 6.440 9 N -0.340 5.340 10 C 0.013 3.987 11 C 0.020 3.980 12 H 0.064 0.936 13 C -0.024 4.024 14 O -0.306 6.306 15 C -0.032 4.032 16 C -0.036 4.036 17 N -0.334 5.334 18 C -0.400 4.400 19 H 0.115 0.885 20 C -0.169 4.169 21 N -0.539 5.539 22 Si 0.710 3.290 23 H -0.213 1.213 24 H -0.231 1.231 25 H -0.196 1.196 26 C 0.033 3.967 27 N -0.265 5.265 28 H 0.081 0.919 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.163 0.837 32 H 0.170 0.830 33 H 0.249 0.751 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.051 0.949 42 H 0.075 0.925 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.679 -4.293 8.597 9.633 hybrid contribution -1.065 0.217 -0.323 1.134 sum -0.386 -4.076 8.274 9.231 Atomic orbital electron populations 1.22888 0.77090 1.02793 1.02905 1.86177 1.23109 1.24750 1.87386 1.20072 0.89484 0.84763 0.90184 1.20958 0.91737 0.99422 1.10113 1.21475 1.01097 0.89739 0.88934 1.20842 0.94913 0.95091 1.10954 1.17757 0.86437 0.83848 0.76736 1.90713 1.13908 1.87211 1.52180 1.45849 1.10929 1.04908 1.72272 1.21162 0.94937 0.81072 1.01521 1.21469 0.92464 0.93240 0.90803 0.93562 1.22905 0.89769 0.88588 1.01172 1.87827 1.51177 1.53215 1.38424 1.23059 0.95861 0.98303 0.85960 1.22088 0.92532 0.88331 1.00613 1.44437 1.43334 1.21297 1.24310 1.19015 0.96087 1.04939 1.19924 0.88544 1.25365 0.97492 0.96663 0.97387 1.69787 1.30427 1.34093 1.19570 0.87065 0.85902 0.76718 0.79268 1.21325 1.23062 1.19643 1.22703 0.91893 0.93802 0.88265 1.67321 1.40505 0.98644 1.20036 0.91913 0.88732 0.92181 0.83738 0.83004 0.75133 0.90913 0.91807 0.92871 0.89328 0.92992 0.89767 0.89918 0.94873 0.92539 0.81793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.37 101.05 1.05 1.47 16 2 O -0.31 -4.19 10.46 -18.17 -0.19 -4.38 16 3 C 0.33 5.08 7.49 -16.96 -0.13 4.95 16 4 C -0.20 -2.75 10.02 -39.34 -0.39 -3.15 16 5 C 0.01 0.20 9.70 -38.91 -0.38 -0.18 16 6 C -0.21 -3.62 5.89 -104.82 -0.62 -4.24 16 7 C 0.57 10.65 7.77 -12.43 -0.10 10.55 16 8 O -0.56 -11.69 16.41 5.30 0.09 -11.61 16 9 N -0.69 -12.57 3.72 -61.33 -0.23 -12.80 16 10 C 0.14 2.38 4.45 -4.05 -0.02 2.37 16 11 C 0.13 2.23 3.21 -67.43 -0.22 2.02 16 12 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 13 C 0.05 0.86 6.29 37.31 0.23 1.09 16 14 O -0.39 -6.72 10.74 -35.23 -0.38 -7.10 16 15 C 0.05 0.79 6.99 37.31 0.26 1.05 16 16 C 0.09 1.80 4.37 -3.53 -0.02 1.78 16 17 N -0.61 -12.80 2.77 -164.30 -0.46 -13.26 16 18 C -0.27 -6.62 7.50 -15.06 -0.11 -6.73 16 19 H 0.10 2.59 6.03 -52.49 -0.32 2.27 16 20 C 0.03 0.82 5.30 -17.43 -0.09 0.73 16 21 N -0.90 -25.38 13.97 55.49 0.78 -24.60 16 22 Si 0.88 20.50 24.26 -169.99 -4.12 16.38 16 23 H -0.29 -6.51 6.42 56.52 0.36 -6.14 16 24 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.27 -6.16 6.78 56.52 0.38 -5.77 16 26 C 0.19 3.24 10.71 -17.14 -0.18 3.05 16 27 N -0.54 -9.01 9.18 -12.97 -0.12 -9.13 16 28 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 31 H 0.14 1.55 8.06 -52.48 -0.42 1.13 16 32 H 0.15 2.05 7.73 -52.49 -0.41 1.64 16 33 H 0.41 7.59 5.36 -40.82 -0.22 7.37 16 34 H 0.07 1.41 7.58 -51.93 -0.39 1.02 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.08 1.80 4.87 -51.93 -0.25 1.54 16 41 H 0.03 0.68 6.86 -51.93 -0.36 0.32 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.17 2.73 6.41 -52.49 -0.34 2.39 16 LS Contribution 346.28 15.07 5.22 5.22 Total: -1.00 -30.72 346.28 -5.82 -36.54 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -5.69 Total: 9.97 kcal Atomic # 6 Polarization: 15.49 SS G_CDS: -0.71 Total: 14.78 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: -0.03 Total: -59.79 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.48 Total: -23.09 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.12 Total: 16.38 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.72 -5.82 -36.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051012804.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.151 kcal (2) G-P(sol) polarization free energy of solvation -30.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds