Wall clock time and date at job start Tue Mar 31 2020 13:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35492 * 116.99947 * 2 1 4 4 C 1.39162 * 119.52485 * 180.02562 * 3 2 1 5 5 C 1.37959 * 119.26699 * 180.02562 * 4 3 2 6 6 C 1.40286 * 118.35380 * 0.02562 * 5 4 3 7 7 C 1.47615 * 120.49631 * 179.97438 * 6 5 4 8 8 O 1.21574 * 120.00159 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99861 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00037 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.47166 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.70596 * 59.91959 * 11 10 9 13 13 C 1.53293 * 109.68463 * 180.45429 * 11 10 9 14 14 O 1.42958 * 109.22674 * 172.02532 * 13 11 10 15 15 C 1.42960 * 114.16798 * 297.42035 * 14 13 11 16 16 C 1.53296 * 109.21817 * 62.58112 * 15 14 13 17 17 N 1.47151 * 109.68291 * 299.38361 * 11 10 9 18 18 C 1.36938 * 120.98223 * 10.01498 * 17 11 10 19 19 H 1.08002 * 119.99449 * 328.45786 * 18 17 11 20 20 C 1.38814 * 119.99804 * 148.46461 * 18 17 11 21 21 N 1.31620 * 119.99687 * 164.16424 * 20 18 17 22 22 Si 1.86793 * 120.00064 * 344.15633 * 20 18 17 23 23 H 1.48507 * 109.46884 * 85.82408 * 22 20 18 24 24 H 1.48496 * 109.47251 * 205.82100 * 22 20 18 25 25 H 1.48500 * 109.47595 * 325.82394 * 22 20 18 26 26 C 1.39525 * 119.00269 * 0.25082 * 6 5 4 27 27 N 1.31666 * 120.62985 * 359.47659 * 26 6 5 28 28 H 1.08997 * 109.47128 * 60.00510 * 1 2 3 29 29 H 1.09000 * 109.47459 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47032 * 300.00215 * 1 2 3 31 31 H 1.08004 * 120.36987 * 0.04380 * 4 3 2 32 32 H 1.07994 * 120.82772 * 180.02562 * 5 4 3 33 33 H 0.97000 * 119.99734 * 0.02562 * 9 7 6 34 34 H 1.09005 * 109.47236 * 59.99853 * 10 9 7 35 35 H 1.09003 * 109.47137 * 300.00041 * 10 9 7 36 36 H 1.09005 * 109.51128 * 52.10296 * 13 11 10 37 37 H 1.09003 * 109.51423 * 291.95192 * 13 11 10 38 38 H 1.08994 * 109.51379 * 302.65758 * 15 14 13 39 39 H 1.08998 * 109.55121 * 182.52876 * 15 14 13 40 40 H 1.09005 * 109.67743 * 187.97299 * 16 15 14 41 41 H 1.08994 * 109.71596 * 67.43978 * 16 15 14 42 42 H 0.96998 * 120.00148 * 179.97438 * 21 20 18 43 43 H 1.07998 * 119.68707 * 179.74977 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0442 1.2072 0.0000 4 6 3.4345 1.2686 -0.0005 5 6 4.0552 2.5006 0.0000 6 6 3.2525 3.6511 0.0016 7 6 3.8670 4.9933 0.0028 8 8 5.0773 5.1077 0.0020 9 7 3.0862 6.0919 0.0039 10 6 3.6959 7.4239 0.0045 11 6 2.5967 8.4880 0.0050 12 1 1.9748 8.3737 0.8930 13 6 3.2295 9.8842 -0.0058 14 8 2.2053 10.8639 -0.1925 15 6 1.5132 10.7569 -1.4388 16 6 0.7924 9.4054 -1.5013 17 7 1.7677 8.3449 -1.2023 18 6 1.8961 7.2542 -2.0203 19 1 2.8553 6.7693 -2.1271 20 6 0.7936 6.7719 -2.7122 21 7 0.9606 5.9419 -3.7200 22 14 -0.9270 7.3008 -2.2130 23 1 -1.2657 8.5811 -2.8849 24 1 -1.9025 6.2566 -2.6169 25 1 -0.9805 7.4852 -0.7405 26 6 1.8646 3.5076 0.0080 27 7 1.3138 2.3117 0.0020 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 4.0210 0.3617 -0.0017 32 1 5.1324 2.5775 -0.0008 33 1 2.1205 6.0005 0.0042 34 1 4.3141 7.5410 -0.8857 35 1 4.3148 7.5398 0.8943 36 1 3.9501 9.9510 -0.8209 37 1 3.7349 10.0622 0.9435 38 1 2.2275 10.8268 -2.2591 39 1 0.7839 11.5627 -1.5214 40 1 0.3807 9.2548 -2.4994 41 1 -0.0114 9.3830 -0.7655 42 1 0.1902 5.6046 -4.2033 43 1 1.2362 4.3859 0.0134 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051012804.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:58 Heat of formation + Delta-G solvation = -62.756363 kcal Electronic energy + Delta-G solvation = -27947.165887 eV Core-core repulsion = 23993.528452 eV Total energy + Delta-G solvation = -3953.637435 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.90274 -40.79466 -40.00009 -38.67000 -37.04108 -35.38239 -33.69516 -33.61369 -32.87846 -31.68017 -29.25400 -28.44664 -27.00631 -25.22868 -25.12847 -24.31154 -23.51500 -21.69948 -21.44012 -19.61297 -19.11197 -18.31127 -18.23219 -17.62922 -17.21169 -17.11171 -16.75640 -16.42845 -16.04701 -15.86006 -15.67407 -15.60516 -15.34791 -15.11690 -14.80370 -14.42852 -14.37672 -14.13409 -13.87312 -13.78934 -13.46541 -13.14121 -12.81331 -12.79751 -12.34096 -12.30896 -12.21148 -12.03590 -11.57736 -11.40053 -11.23663 -11.06613 -11.00164 -10.68441 -10.49090 -9.99309 -9.58679 -8.83577 -8.11114 -5.51753 -0.34600 0.12020 1.30375 1.42969 1.49796 1.83604 1.98979 2.26308 2.42422 2.78036 2.89015 3.05326 3.12787 3.23350 3.70656 3.79918 3.94480 3.96250 4.06139 4.16359 4.24535 4.28860 4.39614 4.41444 4.42855 4.49925 4.57267 4.61764 4.66461 4.72856 4.73785 4.78481 4.92835 4.95533 5.05700 5.22869 5.24536 5.53347 5.87439 6.05421 6.20693 6.22848 6.58703 6.63919 6.85897 7.23828 7.59224 8.00760 9.05833 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014575 B = 0.004455 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.603328 B = 6283.523947 C = 7604.937614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.307 6.307 3 C 0.325 3.675 4 C -0.188 4.188 5 C 0.013 3.987 6 C -0.230 4.230 7 C 0.564 3.436 8 O -0.585 6.585 9 N -0.690 5.690 10 C 0.140 3.860 11 C 0.127 3.873 12 H 0.058 0.942 13 C 0.057 3.943 14 O -0.390 6.390 15 C 0.053 3.947 16 C 0.083 3.917 17 N -0.620 5.620 18 C -0.236 4.236 19 H 0.067 0.933 20 C -0.018 4.018 21 N -0.947 5.947 22 Si 0.933 3.067 23 H -0.276 1.276 24 H -0.320 1.320 25 H -0.260 1.260 26 C 0.182 3.818 27 N -0.557 5.557 28 H 0.049 0.951 29 H 0.131 0.869 30 H 0.060 0.940 31 H 0.180 0.820 32 H 0.166 0.834 33 H 0.408 0.592 34 H 0.048 0.952 35 H 0.091 0.909 36 H 0.049 0.951 37 H 0.125 0.875 38 H 0.048 0.952 39 H 0.115 0.885 40 H 0.064 0.936 41 H 0.037 0.963 42 H 0.258 0.742 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.775 -3.656 10.334 10.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.213 6.213 3 C 0.147 3.853 4 C -0.208 4.208 5 C -0.012 4.012 6 C -0.236 4.236 7 C 0.352 3.648 8 O -0.467 6.467 9 N -0.340 5.340 10 C 0.016 3.984 11 C 0.021 3.979 12 H 0.076 0.924 13 C -0.021 4.021 14 O -0.308 6.308 15 C -0.024 4.024 16 C -0.041 4.041 17 N -0.347 5.347 18 C -0.366 4.366 19 H 0.085 0.915 20 C -0.214 4.214 21 N -0.593 5.593 22 Si 0.763 3.237 23 H -0.203 1.203 24 H -0.250 1.250 25 H -0.184 1.184 26 C 0.025 3.975 27 N -0.281 5.281 28 H 0.067 0.933 29 H 0.149 0.851 30 H 0.078 0.922 31 H 0.197 0.803 32 H 0.184 0.816 33 H 0.246 0.754 34 H 0.066 0.934 35 H 0.109 0.891 36 H 0.068 0.932 37 H 0.143 0.857 38 H 0.067 0.933 39 H 0.133 0.867 40 H 0.082 0.918 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.683 -3.853 10.366 11.080 hybrid contribution -1.012 0.045 -0.819 1.303 sum -0.329 -3.808 9.547 10.284 Atomic orbital electron populations 1.23123 0.75713 1.05006 1.02243 1.86191 1.24457 1.23709 1.86986 1.20427 0.90323 0.84876 0.89719 1.21291 0.91352 1.00167 1.08039 1.21691 1.01679 0.89495 0.88350 1.20812 0.95193 0.94914 1.12676 1.18030 0.86166 0.84576 0.76043 1.90683 1.14804 1.87665 1.53597 1.45880 1.10790 1.05345 1.71955 1.21194 0.94885 0.80743 1.01562 1.21661 0.92098 0.94628 0.89487 0.92404 1.23010 0.89267 0.86818 1.03042 1.87841 1.51356 1.53346 1.38265 1.23016 0.96167 0.97254 0.86012 1.22144 0.92740 0.89655 0.99605 1.44574 1.43987 1.20829 1.25329 1.18777 0.94476 1.04703 1.18601 0.91500 1.25815 1.00440 0.97432 0.97749 1.69922 1.30728 1.36957 1.21650 0.86199 0.82004 0.76039 0.79462 1.20317 1.24957 1.18406 1.22610 0.91907 0.93990 0.89006 1.67289 1.41167 0.98917 1.20726 0.93257 0.85116 0.92157 0.80304 0.81647 0.75399 0.93395 0.89142 0.93225 0.85686 0.93315 0.86745 0.91797 0.94469 0.93281 0.82434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.37 113.37 1.18 1.87 16 2 O -0.31 -7.87 10.46 -87.92 -0.92 -8.79 16 3 C 0.33 9.58 7.49 84.83 0.64 10.22 16 4 C -0.19 -4.82 10.02 22.43 0.22 -4.59 16 5 C 0.01 0.39 9.70 22.70 0.22 0.61 16 6 C -0.23 -7.93 5.89 -19.99 -0.12 -8.05 16 7 C 0.56 21.57 7.77 86.72 0.67 22.24 16 8 O -0.58 -24.63 16.41 -3.95 -0.06 -24.70 16 9 N -0.69 -25.44 3.72 -466.20 -1.73 -27.18 16 10 C 0.14 4.77 4.45 86.38 0.38 5.16 16 11 C 0.13 4.24 3.21 44.96 0.14 4.39 16 12 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 13 C 0.06 1.63 6.29 72.08 0.45 2.08 16 14 O -0.39 -12.19 10.74 -148.98 -1.60 -13.79 16 15 C 0.05 1.69 6.99 72.08 0.50 2.19 16 16 C 0.08 3.20 4.37 86.35 0.38 3.58 16 17 N -0.62 -25.63 2.77 -673.73 -1.87 -27.50 16 18 C -0.24 -11.69 7.50 84.03 0.63 -11.06 16 19 H 0.07 3.72 6.03 -2.91 -0.02 3.70 16 20 C -0.02 -0.97 5.30 84.86 0.45 -0.52 16 21 N -0.95 -55.58 13.97 21.65 0.30 -55.28 16 22 Si 0.93 42.85 24.26 68.60 1.66 44.52 16 23 H -0.28 -12.14 6.42 99.48 0.64 -11.50 16 24 H -0.32 -15.54 7.11 99.48 0.71 -14.83 16 25 H -0.26 -11.25 6.78 99.48 0.67 -10.58 16 26 C 0.18 6.32 10.71 85.03 0.91 7.23 16 27 N -0.56 -18.61 9.18 -307.82 -2.83 -21.44 16 28 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 29 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.06 1.24 8.10 -2.39 -0.02 1.22 16 31 H 0.18 3.27 8.06 -2.91 -0.02 3.25 16 32 H 0.17 4.27 7.73 -2.91 -0.02 4.25 16 33 H 0.41 15.36 5.36 -92.71 -0.50 14.86 16 34 H 0.05 1.88 7.58 -2.38 -0.02 1.86 16 35 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 40 H 0.06 2.70 4.87 -2.38 -0.01 2.69 16 41 H 0.04 1.42 6.86 -2.39 -0.02 1.40 16 42 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 43 H 0.16 5.49 6.41 -2.91 -0.02 5.47 16 Total: -1.00 -67.21 346.28 0.07 -67.14 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: 0.45 Total: 31.67 kcal Atomic # 6 Polarization: 28.69 SS G_CDS: 6.67 Total: 35.35 kcal Atomic # 7 Polarization: -125.27 SS G_CDS: -6.13 Total: -131.39 kcal Atomic # 8 Polarization: -44.70 SS G_CDS: -2.59 Total: -47.28 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.66 Total: 44.52 kcal Total: -67.21 0.07 -67.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051012804.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.382 kcal (2) G-P(sol) polarization free energy of solvation -67.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds