Wall clock time and date at job start Tue Mar 31 2020 13:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35753 * 116.99800 * 2 1 4 4 C 1.39203 * 120.81433 * 359.97438 * 3 2 1 5 5 C 1.38315 * 119.28404 * 180.02562 * 4 3 2 6 6 N 1.31610 * 120.97310 * 359.73432 * 5 4 3 7 7 C 1.32795 * 121.78260 * 0.53985 * 6 5 4 8 8 C 1.48180 * 119.70124 * 179.74786 * 7 6 5 9 9 O 1.21517 * 119.99834 * 179.71636 * 8 7 6 10 10 N 1.34772 * 120.00042 * 359.72216 * 8 7 6 11 11 C 1.46495 * 120.00136 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46989 * 179.97438 * 11 10 8 13 13 H 1.09003 * 109.67726 * 59.83729 * 12 11 10 14 14 C 1.53305 * 109.71079 * 180.36642 * 12 11 10 15 15 O 1.42961 * 109.22197 * 172.04312 * 14 12 11 16 16 C 1.42962 * 114.16908 * 297.42393 * 15 14 12 17 17 C 1.52883 * 109.29886 * 62.44911 * 16 15 14 18 18 N 1.47149 * 109.68449 * 299.31439 * 12 11 10 19 19 C 1.36937 * 120.98198 * 9.67968 * 18 12 11 20 20 H 1.07997 * 120.00179 * 329.07484 * 19 18 12 21 21 C 1.38812 * 119.99727 * 149.07561 * 19 18 12 22 22 N 1.31622 * 119.99859 * 349.27015 * 21 19 18 23 23 Si 1.86797 * 119.99725 * 169.27240 * 21 19 18 24 24 H 1.48506 * 109.46914 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.47320 * 299.99760 * 23 21 19 26 26 H 1.48501 * 109.47276 * 60.00029 * 23 21 19 27 27 C 1.39102 * 120.59970 * 359.46152 * 7 6 5 28 28 H 1.09000 * 109.47376 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47121 * 299.99761 * 1 2 3 30 30 H 1.09003 * 109.47438 * 59.99793 * 1 2 3 31 31 H 1.07995 * 120.35844 * 0.03495 * 4 3 2 32 32 H 1.08005 * 119.51059 * 179.97438 * 5 4 3 33 33 H 0.97006 * 120.00001 * 359.97438 * 10 8 7 34 34 H 1.09003 * 109.47140 * 60.00314 * 11 10 8 35 35 H 1.09000 * 109.47704 * 299.99981 * 11 10 8 36 36 H 1.08999 * 109.51310 * 291.97544 * 14 12 11 37 37 H 1.09005 * 109.51104 * 52.12412 * 14 12 11 38 38 H 1.09002 * 109.51058 * 182.50256 * 16 15 14 39 39 H 1.09000 * 109.51275 * 302.65137 * 16 15 14 40 40 H 1.08996 * 109.61622 * 188.11468 * 17 16 15 41 41 H 1.08990 * 109.52459 * 67.69769 * 17 16 15 42 42 H 0.97003 * 119.99282 * 179.97438 * 22 21 19 43 43 H 1.08003 * 120.50713 * 180.23509 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2096 0.0000 4 6 1.3037 2.3877 -0.0005 5 6 1.9643 3.6029 -0.0011 6 7 3.2792 3.6590 0.0042 7 6 4.0261 2.5611 -0.0005 8 6 5.5033 2.6781 0.0001 9 8 6.1921 1.6769 0.0011 10 7 6.0830 3.8948 -0.0003 11 6 7.5433 4.0105 0.0008 12 6 7.9378 5.4888 -0.0006 13 1 7.5334 5.9774 0.8859 14 6 9.4655 5.6162 -0.0086 15 8 9.8224 6.9877 -0.1968 16 6 9.3941 7.5381 -1.4447 17 6 7.8671 7.5070 -1.5132 18 7 7.4113 6.1411 -1.2099 19 6 6.5276 5.4941 -2.0319 20 1 6.5700 4.4196 -2.1313 21 6 5.5773 6.2195 -2.7374 22 7 5.3830 7.4918 -2.4623 23 14 4.5743 5.3897 -4.0771 24 1 3.6353 6.3735 -4.6736 25 1 5.4856 4.8733 -5.1297 26 1 3.8041 4.2625 -3.4926 27 6 3.4345 1.3022 0.0001 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 0.2243 2.3532 -0.0004 32 1 1.3926 4.5192 -0.0019 33 1 5.5331 4.6940 -0.0014 34 1 7.9469 3.5263 -0.8885 35 1 7.9455 3.5276 0.8915 36 1 9.8654 5.2629 0.9418 37 1 9.8765 5.0183 -0.8221 38 1 9.7426 8.5676 -1.5273 39 1 9.8048 6.9472 -2.2634 40 1 7.5398 7.7896 -2.5137 41 1 7.4555 8.2023 -0.7817 42 1 4.7191 7.9987 -2.9556 43 1 4.0435 0.4102 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051060056.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:18 Heat of formation + Delta-G solvation = -42.619228 kcal Electronic energy + Delta-G solvation = -27839.768577 eV Core-core repulsion = 23887.004354 eV Total energy + Delta-G solvation = -3952.764223 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.74493 -39.28981 -38.44974 -37.77491 -35.31725 -33.57106 -31.87909 -31.55513 -31.05042 -30.32798 -27.86386 -27.20109 -25.83464 -23.60228 -23.38871 -23.33631 -21.64000 -20.25199 -19.64394 -18.50454 -17.28390 -16.79530 -16.09733 -16.01383 -15.87269 -15.73599 -15.49012 -15.04405 -14.67906 -14.42767 -14.40073 -13.98999 -13.91215 -13.76004 -13.41115 -13.17393 -12.92637 -12.64419 -12.45431 -11.89544 -11.73830 -11.53239 -11.47409 -10.99952 -10.82865 -10.72498 -10.38308 -10.22898 -10.00561 -9.91928 -9.62492 -9.36751 -9.22407 -8.96313 -8.95037 -8.61252 -8.23869 -6.67300 -5.84952 -3.33692 0.75425 1.32347 2.84381 3.09316 3.34613 3.38139 3.42200 3.70188 4.10252 4.38201 4.44377 4.53321 4.57553 4.76212 4.83874 4.87366 5.11638 5.16488 5.17971 5.34127 5.38836 5.62036 5.63227 5.75799 5.79809 5.88961 5.95727 6.04527 6.09097 6.18070 6.23633 6.37864 6.43097 6.55639 6.78412 7.02321 7.08419 7.10915 7.52869 7.75512 7.87623 7.90876 8.28594 8.34944 8.77587 9.11535 9.71947 10.30381 11.22121 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015903 B = 0.004183 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.266665 B = 6691.736711 C = 7823.583651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.310 6.310 3 C 0.157 3.843 4 C -0.250 4.250 5 C 0.138 3.862 6 N -0.465 5.465 7 C 0.127 3.873 8 C 0.561 3.439 9 O -0.555 6.555 10 N -0.667 5.667 11 C 0.132 3.868 12 C 0.125 3.875 13 H 0.042 0.958 14 C 0.056 3.944 15 O -0.392 6.392 16 C 0.035 3.965 17 C 0.144 3.856 18 N -0.591 5.591 19 C -0.255 4.255 20 H 0.071 0.929 21 C 0.017 3.983 22 N -0.898 5.898 23 Si 0.896 3.104 24 H -0.290 1.290 25 H -0.285 1.285 26 H -0.281 1.281 27 C -0.150 4.150 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.141 0.859 32 H 0.164 0.836 33 H 0.428 0.572 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.047 0.953 38 H 0.079 0.921 39 H 0.040 0.960 40 H 0.092 0.908 41 H 0.029 0.971 42 H 0.255 0.745 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.143 -8.027 5.558 12.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.221 6.221 3 C 0.103 3.897 4 C -0.271 4.271 5 C -0.022 4.022 6 N -0.179 5.179 7 C -0.011 4.011 8 C 0.345 3.655 9 O -0.434 6.434 10 N -0.318 5.318 11 C 0.008 3.992 12 C 0.018 3.982 13 H 0.060 0.940 14 C -0.023 4.023 15 O -0.311 6.311 16 C -0.043 4.043 17 C 0.019 3.981 18 N -0.316 5.316 19 C -0.384 4.384 20 H 0.088 0.912 21 C -0.182 4.182 22 N -0.541 5.541 23 Si 0.726 3.274 24 H -0.216 1.216 25 H -0.211 1.211 26 H -0.207 1.207 27 C -0.172 4.172 28 H 0.121 0.879 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.158 0.842 32 H 0.181 0.819 33 H 0.268 0.732 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.065 0.935 38 H 0.098 0.902 39 H 0.058 0.942 40 H 0.110 0.890 41 H 0.047 0.953 42 H 0.065 0.935 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.156 -7.882 5.619 11.471 hybrid contribution -1.918 -0.760 -1.129 2.351 sum -8.074 -8.641 4.490 12.650 Atomic orbital electron populations 1.23130 0.77895 1.04262 1.01676 1.86076 1.21762 1.26186 1.88118 1.19165 0.92134 0.84649 0.93716 1.22370 1.01532 0.93307 1.09876 1.22636 0.89887 0.97086 0.92544 1.67739 1.07098 1.31065 1.11983 1.21120 0.94883 0.88378 0.96705 1.17727 0.85524 0.84208 0.78086 1.90729 1.63345 1.36906 1.52461 1.45924 1.08013 1.08531 1.69357 1.21268 0.80191 0.96530 1.01210 1.21430 0.93280 0.91563 0.91968 0.94003 1.22864 0.95437 0.83497 1.00487 1.87800 1.78709 1.25755 1.38835 1.23284 0.98738 0.97243 0.85030 1.21322 0.88249 0.86255 1.02287 1.44061 1.51051 1.13989 1.22541 1.19113 1.07773 0.91933 1.19609 0.91151 1.25055 0.96801 0.96160 1.00226 1.69969 1.35172 1.07516 1.41479 0.86471 0.80101 0.78688 0.82184 1.21602 1.21130 1.20739 1.21371 0.91800 0.99800 1.04179 0.87918 0.92333 0.92324 0.84172 0.81871 0.73183 0.91166 0.91949 0.89879 0.93471 0.90239 0.94159 0.88965 0.95298 0.93499 0.82895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.84 101.05 0.99 1.18 16 2 O -0.31 -3.72 10.51 -18.97 -0.20 -3.92 16 3 C 0.16 2.16 6.73 -38.85 -0.26 1.90 16 4 C -0.25 -3.04 9.12 -39.19 -0.36 -3.40 16 5 C 0.14 1.97 11.17 -17.62 -0.20 1.77 16 6 N -0.46 -8.38 9.54 -9.87 -0.09 -8.47 16 7 C 0.13 2.34 6.75 -83.05 -0.56 1.78 16 8 C 0.56 11.34 7.81 -12.18 -0.10 11.24 16 9 O -0.55 -11.98 16.32 5.35 0.09 -11.89 16 10 N -0.67 -13.54 3.76 -61.14 -0.23 -13.77 16 11 C 0.13 2.51 4.45 -4.04 -0.02 2.50 16 12 C 0.12 2.49 3.21 -67.42 -0.22 2.27 16 13 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 14 C 0.06 1.00 6.29 37.32 0.23 1.24 16 15 O -0.39 -7.68 10.74 -35.23 -0.38 -8.06 16 16 C 0.03 0.68 6.97 37.10 0.26 0.94 16 17 C 0.14 3.31 5.35 -3.74 -0.02 3.29 16 18 N -0.59 -13.85 3.04 -164.55 -0.50 -14.35 16 19 C -0.26 -6.47 7.07 -15.06 -0.11 -6.58 16 20 H 0.07 1.83 5.80 -52.49 -0.30 1.53 16 21 C 0.02 0.46 5.06 -17.43 -0.09 0.37 16 22 N -0.90 -24.51 11.14 55.49 0.62 -23.89 16 23 Si 0.90 21.56 29.57 -169.99 -5.03 16.53 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 C -0.15 -2.43 9.60 -38.89 -0.37 -2.80 16 28 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.35 7.71 -51.93 -0.40 -0.05 16 30 H 0.06 0.38 7.71 -51.93 -0.40 -0.02 16 31 H 0.14 1.19 6.45 -52.49 -0.34 0.85 16 32 H 0.16 1.87 8.06 -52.48 -0.42 1.44 16 33 H 0.43 9.33 6.65 -40.82 -0.27 9.06 16 34 H 0.07 1.42 7.56 -51.93 -0.39 1.03 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.09 2.32 6.33 -51.93 -0.33 1.99 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 43 H 0.15 2.43 7.64 -52.48 -0.40 2.03 16 LS Contribution 352.68 15.07 5.31 5.31 Total: -1.00 -31.05 352.68 -6.99 -38.04 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -5.78 Total: 8.78 kcal Atomic # 6 Polarization: 16.50 SS G_CDS: -0.81 Total: 15.69 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: -0.21 Total: -60.49 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.49 Total: -23.87 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.05 -6.99 -38.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051060056.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.576 kcal (2) G-P(sol) polarization free energy of solvation -31.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds