Wall clock time and date at job start Tue Mar 31 2020 13:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35753 * 116.99800 * 2 1 4 4 C 1.39203 * 120.81433 * 359.97438 * 3 2 1 5 5 C 1.38315 * 119.28404 * 180.02562 * 4 3 2 6 6 N 1.31610 * 120.97310 * 359.73432 * 5 4 3 7 7 C 1.32795 * 121.78260 * 0.53985 * 6 5 4 8 8 C 1.48180 * 119.70124 * 179.74786 * 7 6 5 9 9 O 1.21517 * 119.99834 * 179.71636 * 8 7 6 10 10 N 1.34772 * 120.00042 * 359.72216 * 8 7 6 11 11 C 1.46495 * 120.00136 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46989 * 179.97438 * 11 10 8 13 13 H 1.09003 * 109.67726 * 59.83729 * 12 11 10 14 14 C 1.53305 * 109.71079 * 180.36642 * 12 11 10 15 15 O 1.42961 * 109.22197 * 172.04312 * 14 12 11 16 16 C 1.42962 * 114.16908 * 297.42393 * 15 14 12 17 17 C 1.52883 * 109.29886 * 62.44911 * 16 15 14 18 18 N 1.47149 * 109.68449 * 299.31439 * 12 11 10 19 19 C 1.36937 * 120.98198 * 9.67968 * 18 12 11 20 20 H 1.07997 * 120.00179 * 329.07484 * 19 18 12 21 21 C 1.38812 * 119.99727 * 149.07561 * 19 18 12 22 22 N 1.31622 * 119.99859 * 349.27015 * 21 19 18 23 23 Si 1.86797 * 119.99725 * 169.27240 * 21 19 18 24 24 H 1.48506 * 109.46914 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.47320 * 299.99760 * 23 21 19 26 26 H 1.48501 * 109.47276 * 60.00029 * 23 21 19 27 27 C 1.39102 * 120.59970 * 359.46152 * 7 6 5 28 28 H 1.09000 * 109.47376 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47121 * 299.99761 * 1 2 3 30 30 H 1.09003 * 109.47438 * 59.99793 * 1 2 3 31 31 H 1.07995 * 120.35844 * 0.03495 * 4 3 2 32 32 H 1.08005 * 119.51059 * 179.97438 * 5 4 3 33 33 H 0.97006 * 120.00001 * 359.97438 * 10 8 7 34 34 H 1.09003 * 109.47140 * 60.00314 * 11 10 8 35 35 H 1.09000 * 109.47704 * 299.99981 * 11 10 8 36 36 H 1.08999 * 109.51310 * 291.97544 * 14 12 11 37 37 H 1.09005 * 109.51104 * 52.12412 * 14 12 11 38 38 H 1.09002 * 109.51058 * 182.50256 * 16 15 14 39 39 H 1.09000 * 109.51275 * 302.65137 * 16 15 14 40 40 H 1.08996 * 109.61622 * 188.11468 * 17 16 15 41 41 H 1.08990 * 109.52459 * 67.69769 * 17 16 15 42 42 H 0.97003 * 119.99282 * 179.97438 * 22 21 19 43 43 H 1.08003 * 120.50713 * 180.23509 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2096 0.0000 4 6 1.3037 2.3877 -0.0005 5 6 1.9643 3.6029 -0.0011 6 7 3.2792 3.6590 0.0042 7 6 4.0261 2.5611 -0.0005 8 6 5.5033 2.6781 0.0001 9 8 6.1921 1.6769 0.0011 10 7 6.0830 3.8948 -0.0003 11 6 7.5433 4.0105 0.0008 12 6 7.9378 5.4888 -0.0006 13 1 7.5334 5.9774 0.8859 14 6 9.4655 5.6162 -0.0086 15 8 9.8224 6.9877 -0.1968 16 6 9.3941 7.5381 -1.4447 17 6 7.8671 7.5070 -1.5132 18 7 7.4113 6.1411 -1.2099 19 6 6.5276 5.4941 -2.0319 20 1 6.5700 4.4196 -2.1313 21 6 5.5773 6.2195 -2.7374 22 7 5.3830 7.4918 -2.4623 23 14 4.5743 5.3897 -4.0771 24 1 3.6353 6.3735 -4.6736 25 1 5.4856 4.8733 -5.1297 26 1 3.8041 4.2625 -3.4926 27 6 3.4345 1.3022 0.0001 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 0.2243 2.3532 -0.0004 32 1 1.3926 4.5192 -0.0019 33 1 5.5331 4.6940 -0.0014 34 1 7.9469 3.5263 -0.8885 35 1 7.9455 3.5276 0.8915 36 1 9.8654 5.2629 0.9418 37 1 9.8765 5.0183 -0.8221 38 1 9.7426 8.5676 -1.5273 39 1 9.8048 6.9472 -2.2634 40 1 7.5398 7.7896 -2.5137 41 1 7.4555 8.2023 -0.7817 42 1 4.7191 7.9987 -2.9556 43 1 4.0435 0.4102 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051060056.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:17 Heat of formation + Delta-G solvation = -65.073860 kcal Electronic energy + Delta-G solvation = -27840.742283 eV Core-core repulsion = 23887.004354 eV Total energy + Delta-G solvation = -3953.737929 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.90085 -40.70981 -39.91078 -38.99578 -36.96718 -35.33783 -33.42939 -32.70359 -32.53418 -31.91396 -29.02891 -28.57812 -27.30402 -25.25067 -24.86264 -24.45110 -23.23403 -21.64014 -21.34329 -19.79130 -18.57830 -18.33585 -17.62837 -17.32266 -17.13367 -16.90155 -16.72500 -16.46176 -16.27163 -16.18589 -15.60344 -15.55257 -15.42458 -15.05647 -14.81309 -14.65699 -14.47313 -14.24652 -13.53091 -13.38756 -13.12064 -12.89666 -12.73003 -12.55299 -12.50626 -12.33488 -12.16005 -11.99111 -11.84162 -11.42640 -11.25523 -10.73814 -10.56898 -10.52961 -10.40655 -10.00964 -9.86851 -8.58951 -7.85168 -5.34626 -0.45506 0.20482 1.39921 1.41455 1.46851 1.69629 1.88001 2.37028 2.47115 2.81780 3.04201 3.18049 3.33175 3.46526 3.56137 3.78978 3.97049 4.02767 4.12895 4.24403 4.32307 4.36029 4.36839 4.47920 4.50163 4.59281 4.65057 4.67729 4.68318 4.73274 4.75881 4.88382 5.02254 5.12346 5.31326 5.33195 5.50120 5.65246 5.70380 6.12099 6.31678 6.39058 6.52224 6.85884 7.13905 7.19411 7.78907 8.34469 9.19758 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015903 B = 0.004183 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.266665 B = 6691.736711 C = 7823.583651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.323 6.323 3 C 0.160 3.840 4 C -0.226 4.226 5 C 0.127 3.873 6 N -0.499 5.499 7 C 0.099 3.901 8 C 0.558 3.442 9 O -0.577 6.577 10 N -0.673 5.673 11 C 0.136 3.864 12 C 0.125 3.875 13 H 0.036 0.964 14 C 0.059 3.941 15 O -0.397 6.397 16 C 0.047 3.953 17 C 0.150 3.850 18 N -0.605 5.605 19 C -0.241 4.241 20 H 0.062 0.938 21 C -0.023 4.023 22 N -0.922 5.922 23 Si 0.942 3.058 24 H -0.290 1.290 25 H -0.288 1.288 26 H -0.287 1.287 27 C -0.160 4.160 28 H 0.125 0.875 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.185 0.815 32 H 0.191 0.809 33 H 0.420 0.580 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.120 0.880 37 H 0.051 0.949 38 H 0.105 0.895 39 H 0.044 0.956 40 H 0.066 0.934 41 H 0.006 0.994 42 H 0.250 0.750 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.308 -8.940 6.104 13.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.234 6.234 3 C 0.106 3.894 4 C -0.246 4.246 5 C -0.032 4.032 6 N -0.214 5.214 7 C -0.038 4.038 8 C 0.343 3.657 9 O -0.459 6.459 10 N -0.322 5.322 11 C 0.012 3.988 12 C 0.019 3.981 13 H 0.054 0.946 14 C -0.020 4.020 15 O -0.315 6.315 16 C -0.031 4.031 17 C 0.024 3.976 18 N -0.331 5.331 19 C -0.371 4.371 20 H 0.080 0.920 21 C -0.220 4.220 22 N -0.568 5.568 23 Si 0.772 3.228 24 H -0.216 1.216 25 H -0.215 1.215 26 H -0.213 1.213 27 C -0.182 4.182 28 H 0.143 0.857 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.203 0.797 32 H 0.207 0.793 33 H 0.258 0.742 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.138 0.862 37 H 0.069 0.931 38 H 0.123 0.877 39 H 0.062 0.938 40 H 0.085 0.915 41 H 0.024 0.976 42 H 0.059 0.941 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.310 -8.815 6.174 13.011 hybrid contribution -1.679 -0.578 -1.237 2.164 sum -8.990 -9.393 4.938 13.908 Atomic orbital electron populations 1.23552 0.75122 1.06408 1.03105 1.86082 1.24540 1.25193 1.87618 1.19173 0.91408 0.86032 0.92795 1.22746 1.03529 0.91628 1.06736 1.23193 0.88901 0.99174 0.91974 1.67654 1.09027 1.31340 1.13417 1.20835 0.93867 0.89473 0.99594 1.18095 0.86702 0.83693 0.77218 1.90689 1.64263 1.37328 1.53572 1.45956 1.08338 1.08318 1.69591 1.21282 0.79847 0.95952 1.01676 1.21567 0.94847 0.91570 0.90116 0.94647 1.22981 0.93458 0.82892 1.02629 1.87804 1.78398 1.26628 1.38679 1.23144 0.95686 0.98966 0.85312 1.21157 0.90813 0.85605 1.00005 1.44269 1.51006 1.14167 1.23680 1.19115 1.07353 0.91523 1.19095 0.91994 1.25484 0.97957 0.96592 1.01947 1.70079 1.35919 1.08297 1.42471 0.85753 0.78999 0.77641 0.80440 1.21567 1.21462 1.21326 1.21362 0.93407 0.98745 1.04723 0.85684 0.90542 0.91081 0.79748 0.79262 0.74162 0.92555 0.89472 0.86250 0.93065 0.87657 0.93806 0.91540 0.97623 0.94071 0.83567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.84 113.37 1.12 1.24 16 2 O -0.32 -6.96 10.51 -90.79 -0.95 -7.92 16 3 C 0.16 4.13 6.73 22.74 0.15 4.28 16 4 C -0.23 -4.82 9.12 22.52 0.21 -4.62 16 5 C 0.13 3.40 11.17 84.74 0.95 4.35 16 6 N -0.50 -18.05 9.54 -185.14 -1.77 -19.82 16 7 C 0.10 3.71 6.75 41.85 0.28 4.00 16 8 C 0.56 23.19 7.81 86.89 0.68 23.87 16 9 O -0.58 -25.56 16.32 -3.77 -0.06 -25.62 16 10 N -0.67 -27.91 3.76 -465.65 -1.75 -29.66 16 11 C 0.14 5.17 4.45 86.38 0.38 5.56 16 12 C 0.13 4.94 3.21 44.97 0.14 5.08 16 13 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 14 C 0.06 1.98 6.29 72.08 0.45 2.43 16 15 O -0.40 -14.72 10.74 -148.98 -1.60 -16.32 16 16 C 0.05 1.75 6.97 71.94 0.50 2.26 16 17 C 0.15 6.95 5.35 86.22 0.46 7.41 16 18 N -0.61 -28.66 3.04 -674.50 -2.05 -30.70 16 19 C -0.24 -12.43 7.07 84.03 0.59 -11.83 16 20 H 0.06 3.30 5.80 -2.91 -0.02 3.28 16 21 C -0.02 -1.22 5.06 84.86 0.43 -0.79 16 22 N -0.92 -51.51 11.14 21.65 0.24 -51.27 16 23 Si 0.94 45.03 29.57 68.60 2.03 47.06 16 24 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 25 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 26 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 27 C -0.16 -5.22 9.60 22.72 0.22 -5.00 16 28 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.08 0.57 7.71 -2.38 -0.02 0.55 16 30 H 0.07 0.61 7.71 -2.39 -0.02 0.59 16 31 H 0.19 2.20 6.45 -2.91 -0.02 2.18 16 32 H 0.19 3.88 8.06 -2.91 -0.02 3.86 16 33 H 0.42 18.88 6.65 -92.70 -0.62 18.26 16 34 H 0.06 2.30 7.56 -2.39 -0.02 2.28 16 35 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 36 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16 37 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 38 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 39 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.07 3.43 6.33 -2.39 -0.02 3.41 16 41 H 0.01 0.28 8.14 -2.39 -0.02 0.27 16 42 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 43 H 0.15 4.80 7.64 -2.91 -0.02 4.78 16 Total: -1.00 -69.03 352.68 1.08 -67.95 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: 0.43 Total: 28.08 kcal Atomic # 6 Polarization: 31.66 SS G_CDS: 6.57 Total: 38.23 kcal Atomic # 7 Polarization: -126.13 SS G_CDS: -5.32 Total: -131.46 kcal Atomic # 8 Polarization: -47.24 SS G_CDS: -2.62 Total: -49.86 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -69.03 1.08 -67.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051060056.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.875 kcal (2) G-P(sol) polarization free energy of solvation -69.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds