Wall clock time and date at job start Tue Mar 31 2020 13:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35427 * 116.99897 * 2 1 4 4 N 1.32233 * 119.80554 * 0.28995 * 3 2 1 5 5 C 1.31880 * 121.80519 * 180.33645 * 4 3 2 6 6 C 1.38360 * 121.18028 * 359.65666 * 5 4 3 7 7 C 1.38331 * 119.46058 * 0.02562 * 6 5 4 8 8 C 1.39989 * 118.35255 * 359.97438 * 7 6 5 9 9 C 1.47522 * 120.60167 * 180.02562 * 8 7 6 10 10 O 1.21581 * 120.00259 * 179.97438 * 9 8 7 11 11 N 1.34782 * 119.99725 * 0.02562 * 9 8 7 12 12 C 1.46503 * 119.99675 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.46606 * 179.97438 * 12 11 9 14 14 H 1.08996 * 109.68129 * 299.92670 * 13 12 11 15 15 C 1.53297 * 109.70987 * 179.39213 * 13 12 11 16 16 O 1.42956 * 109.22244 * 187.95694 * 15 13 12 17 17 C 1.42963 * 114.16858 * 62.58508 * 16 15 13 18 18 C 1.53720 * 109.14273 * 297.28738 * 17 16 15 19 19 N 1.47147 * 108.16372 * 52.53830 * 18 17 16 20 20 C 1.36937 * 120.98499 * 129.43130 * 19 18 17 21 21 H 1.07999 * 119.99791 * 210.76151 * 20 19 18 22 22 C 1.38816 * 119.99837 * 30.75878 * 20 19 18 23 23 N 1.31617 * 119.99623 * 11.74236 * 22 20 19 24 24 Si 1.86798 * 119.99833 * 191.74642 * 22 20 19 25 25 H 1.48504 * 109.47013 * 269.99996 * 24 22 20 26 26 H 1.48498 * 109.47078 * 30.00021 * 24 22 20 27 27 H 1.48498 * 109.47073 * 149.99823 * 24 22 20 28 28 H 1.09003 * 109.47199 * 299.99856 * 1 2 3 29 29 H 1.08996 * 109.47415 * 60.00013 * 1 2 3 30 30 H 1.09002 * 109.47404 * 180.02562 * 1 2 3 31 31 H 1.07994 * 119.41026 * 179.67441 * 5 4 3 32 32 H 1.07999 * 120.26646 * 179.97438 * 6 5 4 33 33 H 1.08003 * 120.82551 * 180.02562 * 7 6 5 34 34 H 0.97000 * 119.99639 * 359.97438 * 11 9 8 35 35 H 1.08993 * 109.47134 * 59.99912 * 12 11 9 36 36 H 1.08999 * 109.46750 * 299.99267 * 12 11 9 37 37 H 1.09002 * 109.51094 * 307.88009 * 15 13 12 38 38 H 1.09001 * 109.51153 * 67.98008 * 15 13 12 39 39 H 1.09000 * 109.51576 * 57.33970 * 17 16 15 40 40 H 1.09000 * 109.51391 * 177.49645 * 17 16 15 41 41 H 1.08998 * 109.83979 * 292.85192 * 18 17 16 42 42 H 1.09003 * 109.74420 * 172.16830 * 18 17 16 43 43 H 0.97004 * 119.99348 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3198 2.3132 0.0058 5 6 1.8771 3.5084 -0.0005 6 6 3.2526 3.6574 -0.0065 7 6 4.0587 2.5333 -0.0064 8 6 3.4450 1.2751 0.0004 9 6 4.2569 0.0435 0.0014 10 8 3.7125 -1.0436 0.0078 11 7 5.6024 0.1233 -0.0037 12 6 6.4087 -1.0998 -0.0022 13 6 7.8937 -0.7316 -0.0095 14 1 8.1232 -0.1498 -0.9021 15 6 8.7429 -2.0077 0.0074 16 8 10.1169 -1.6564 0.1874 17 6 10.3966 -1.0042 1.4284 18 6 9.6318 0.3282 1.4812 19 7 8.2151 0.0557 1.1915 20 6 7.2247 0.5256 2.0121 21 1 6.3049 -0.0298 2.1211 22 6 7.4030 1.7157 2.7040 23 7 8.4106 2.5072 2.4030 24 14 6.2132 2.1937 4.0624 25 1 5.0961 2.9847 3.4862 26 1 5.6729 0.9670 4.7015 27 1 6.9245 3.0094 5.0792 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.2486 4.3866 -0.0008 32 1 3.6933 4.6434 -0.0121 33 1 5.1349 2.6240 -0.0106 34 1 6.0367 0.9906 -0.0085 35 1 6.1765 -1.6892 -0.8891 36 1 6.1829 -1.6826 0.8909 37 1 8.4206 -2.6487 0.8280 38 1 8.6226 -2.5377 -0.9374 39 1 10.0803 -1.6415 2.2541 40 1 11.4667 -0.8115 1.5054 41 1 10.0333 1.0150 0.7361 42 1 9.7256 0.7676 2.4743 43 1 8.5354 3.3387 2.8867 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051092143.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:02 Heat of formation + Delta-G solvation = -41.543060 kcal Electronic energy + Delta-G solvation = -28296.099561 eV Core-core repulsion = 24343.382004 eV Total energy + Delta-G solvation = -3952.717557 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.70877 -39.02534 -38.13298 -37.73765 -35.30554 -33.61417 -32.70790 -31.37405 -30.73894 -30.33222 -27.34996 -27.12972 -25.76655 -24.00372 -23.47748 -22.76759 -21.71903 -20.12119 -19.69665 -18.39306 -17.46596 -16.94387 -16.41873 -16.02092 -15.80467 -15.61862 -14.95240 -14.84528 -14.63864 -14.33657 -14.10467 -13.88249 -13.81795 -13.75520 -13.18718 -13.15950 -12.79903 -12.54467 -12.42419 -11.87090 -11.68689 -11.56270 -11.15387 -11.09860 -10.90235 -10.77167 -10.43867 -10.30058 -10.07570 -9.91089 -9.82177 -9.68598 -9.33529 -8.97362 -8.71364 -8.48927 -8.19941 -6.77504 -5.95683 -3.44669 0.83807 1.34887 3.16750 3.23119 3.28229 3.32909 3.38015 3.69612 4.06710 4.29629 4.33531 4.51895 4.89979 4.98304 5.08714 5.15909 5.21882 5.27790 5.33820 5.36390 5.55607 5.60222 5.64037 5.72090 5.84311 5.96024 6.01417 6.08998 6.14389 6.18371 6.23561 6.30006 6.41485 6.50445 6.74011 7.04308 7.09687 7.32102 7.45172 7.67295 7.79564 7.84740 8.20428 8.25203 8.83231 9.01478 9.61570 10.20871 11.10355 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013956 B = 0.004851 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.886039 B = 5770.773145 C = 6971.651650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.270 6.270 3 C 0.365 3.635 4 N -0.551 5.551 5 C 0.156 3.844 6 C -0.219 4.219 7 C -0.001 4.001 8 C -0.199 4.199 9 C 0.557 3.443 10 O -0.538 6.538 11 N -0.692 5.692 12 C 0.138 3.862 13 C 0.124 3.876 14 H 0.042 0.958 15 C 0.056 3.944 16 O -0.392 6.392 17 C 0.034 3.966 18 C 0.144 3.856 19 N -0.592 5.592 20 C -0.255 4.255 21 H 0.074 0.926 22 C 0.011 3.989 23 N -0.899 5.899 24 Si 0.890 3.110 25 H -0.283 1.283 26 H -0.279 1.279 27 H -0.288 1.288 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.161 0.839 32 H 0.142 0.858 33 H 0.152 0.848 34 H 0.412 0.588 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.047 0.953 38 H 0.083 0.917 39 H 0.041 0.959 40 H 0.079 0.921 41 H 0.030 0.970 42 H 0.092 0.908 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.707 0.571 -5.518 9.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.174 6.174 3 C 0.185 3.815 4 N -0.275 5.275 5 C 0.000 4.000 6 C -0.239 4.239 7 C -0.027 4.027 8 C -0.205 4.205 9 C 0.342 3.658 10 O -0.417 6.417 11 N -0.345 5.345 12 C 0.013 3.987 13 C 0.017 3.983 14 H 0.059 0.941 15 C -0.023 4.023 16 O -0.311 6.311 17 C -0.044 4.044 18 C 0.019 3.981 19 N -0.317 5.317 20 C -0.384 4.384 21 H 0.092 0.908 22 C -0.189 4.189 23 N -0.543 5.543 24 Si 0.719 3.281 25 H -0.210 1.210 26 H -0.204 1.204 27 H -0.214 1.214 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.114 0.886 31 H 0.178 0.822 32 H 0.160 0.840 33 H 0.170 0.830 34 H 0.251 0.749 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.101 0.899 39 H 0.059 0.941 40 H 0.097 0.903 41 H 0.048 0.952 42 H 0.110 0.890 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.691 -0.469 -5.555 10.325 hybrid contribution 0.132 1.248 1.150 1.702 sum -8.559 0.780 -4.405 9.657 Atomic orbital electron populations 1.22898 0.78138 1.02945 1.02008 1.86548 1.21799 1.23111 1.85948 1.19846 0.88201 0.84961 0.88527 1.67410 1.40403 0.98689 1.21017 1.22558 0.93036 0.93618 0.90819 1.21941 0.94644 1.00096 1.07252 1.21868 1.01474 0.90466 0.88879 1.20147 0.91471 0.95477 1.13429 1.17698 0.82402 0.87952 0.77715 1.90764 1.72037 1.28300 1.50647 1.45898 1.04784 1.11075 1.72719 1.21163 0.89664 0.86710 1.01116 1.21445 0.91789 0.93188 0.91850 0.94077 1.22857 0.82778 0.96075 1.00564 1.87798 1.25193 1.78758 1.39346 1.23428 0.99500 0.96209 0.85223 1.21497 0.82873 0.91484 1.02242 1.44115 1.02199 1.61933 1.23478 1.19262 0.97787 1.01644 1.19704 0.90835 1.25094 0.97948 0.95539 1.00306 1.69986 1.31052 1.11714 1.41532 0.86475 0.80691 0.78513 0.82381 1.20992 1.20399 1.21420 0.92493 0.92520 0.88639 0.82178 0.83988 0.83024 0.74882 0.92162 0.91380 0.93462 0.89868 0.94071 0.90277 0.95194 0.89002 0.93424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.38 101.05 1.05 1.49 16 2 O -0.27 -4.73 8.58 -39.74 -0.34 -5.07 16 3 C 0.36 6.34 7.51 -16.61 -0.12 6.22 16 4 N -0.55 -8.31 9.21 -12.98 -0.12 -8.43 16 5 C 0.16 1.95 11.17 -17.49 -0.20 1.75 16 6 C -0.22 -2.83 10.09 -39.50 -0.40 -3.22 16 7 C 0.00 -0.02 9.64 -38.89 -0.37 -0.39 16 8 C -0.20 -3.57 5.90 -104.69 -0.62 -4.19 16 9 C 0.56 11.08 7.77 -12.47 -0.10 10.99 16 10 O -0.54 -12.03 15.19 -16.48 -0.25 -12.28 16 11 N -0.69 -13.20 3.72 -61.35 -0.23 -13.43 16 12 C 0.14 2.55 4.45 -4.04 -0.02 2.53 16 13 C 0.12 2.38 3.21 -67.42 -0.22 2.17 16 14 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 15 C 0.06 0.98 6.29 37.31 0.23 1.22 16 16 O -0.39 -7.51 10.74 -35.23 -0.38 -7.89 16 17 C 0.03 0.65 7.00 37.53 0.26 0.91 16 18 C 0.14 3.20 5.41 -3.31 -0.02 3.18 16 19 N -0.59 -13.27 3.03 -164.04 -0.50 -13.77 16 20 C -0.25 -6.16 7.05 -15.06 -0.11 -6.26 16 21 H 0.07 1.85 5.80 -52.49 -0.30 1.54 16 22 C 0.01 0.27 5.04 -17.43 -0.09 0.18 16 23 N -0.90 -23.33 11.16 55.49 0.62 -22.71 16 24 Si 0.89 20.53 29.57 -169.99 -5.03 15.50 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 28 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 29 H 0.06 0.64 8.11 -51.93 -0.42 0.22 16 30 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.15 2.34 6.52 -52.48 -0.34 2.00 16 34 H 0.41 7.96 5.40 -40.82 -0.22 7.74 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 1.37 7.58 -51.93 -0.39 0.98 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.09 2.24 6.33 -51.93 -0.33 1.91 16 43 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 LS Contribution 350.80 15.07 5.29 5.29 Total: -1.00 -30.35 350.80 -7.44 -37.78 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.79 Total: 8.45 kcal Atomic # 6 Polarization: 17.28 SS G_CDS: -0.71 Total: 16.57 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: -0.22 Total: -58.34 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.97 Total: -25.24 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.50 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.35 -7.44 -37.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051092143.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.762 kcal (2) G-P(sol) polarization free energy of solvation -30.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds