Wall clock time and date at job start Tue Mar 31 2020 13:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35427 * 116.99897 * 2 1 4 4 N 1.32233 * 119.80554 * 0.28995 * 3 2 1 5 5 C 1.31880 * 121.80519 * 180.33645 * 4 3 2 6 6 C 1.38360 * 121.18028 * 359.65666 * 5 4 3 7 7 C 1.38331 * 119.46058 * 0.02562 * 6 5 4 8 8 C 1.39989 * 118.35255 * 359.97438 * 7 6 5 9 9 C 1.47522 * 120.60167 * 180.02562 * 8 7 6 10 10 O 1.21581 * 120.00259 * 179.97438 * 9 8 7 11 11 N 1.34782 * 119.99725 * 0.02562 * 9 8 7 12 12 C 1.46503 * 119.99675 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.46606 * 179.97438 * 12 11 9 14 14 H 1.08996 * 109.68129 * 299.92670 * 13 12 11 15 15 C 1.53297 * 109.70987 * 179.39213 * 13 12 11 16 16 O 1.42956 * 109.22244 * 187.95694 * 15 13 12 17 17 C 1.42963 * 114.16858 * 62.58508 * 16 15 13 18 18 C 1.53720 * 109.14273 * 297.28738 * 17 16 15 19 19 N 1.47147 * 108.16372 * 52.53830 * 18 17 16 20 20 C 1.36937 * 120.98499 * 129.43130 * 19 18 17 21 21 H 1.07999 * 119.99791 * 210.76151 * 20 19 18 22 22 C 1.38816 * 119.99837 * 30.75878 * 20 19 18 23 23 N 1.31617 * 119.99623 * 11.74236 * 22 20 19 24 24 Si 1.86798 * 119.99833 * 191.74642 * 22 20 19 25 25 H 1.48504 * 109.47013 * 269.99996 * 24 22 20 26 26 H 1.48498 * 109.47078 * 30.00021 * 24 22 20 27 27 H 1.48498 * 109.47073 * 149.99823 * 24 22 20 28 28 H 1.09003 * 109.47199 * 299.99856 * 1 2 3 29 29 H 1.08996 * 109.47415 * 60.00013 * 1 2 3 30 30 H 1.09002 * 109.47404 * 180.02562 * 1 2 3 31 31 H 1.07994 * 119.41026 * 179.67441 * 5 4 3 32 32 H 1.07999 * 120.26646 * 179.97438 * 6 5 4 33 33 H 1.08003 * 120.82551 * 180.02562 * 7 6 5 34 34 H 0.97000 * 119.99639 * 359.97438 * 11 9 8 35 35 H 1.08993 * 109.47134 * 59.99912 * 12 11 9 36 36 H 1.08999 * 109.46750 * 299.99267 * 12 11 9 37 37 H 1.09002 * 109.51094 * 307.88009 * 15 13 12 38 38 H 1.09001 * 109.51153 * 67.98008 * 15 13 12 39 39 H 1.09000 * 109.51576 * 57.33970 * 17 16 15 40 40 H 1.09000 * 109.51391 * 177.49645 * 17 16 15 41 41 H 1.08998 * 109.83979 * 292.85192 * 18 17 16 42 42 H 1.09003 * 109.74420 * 172.16830 * 18 17 16 43 43 H 0.97004 * 119.99348 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3198 2.3132 0.0058 5 6 1.8771 3.5084 -0.0005 6 6 3.2526 3.6574 -0.0065 7 6 4.0587 2.5333 -0.0064 8 6 3.4450 1.2751 0.0004 9 6 4.2569 0.0435 0.0014 10 8 3.7125 -1.0436 0.0078 11 7 5.6024 0.1233 -0.0037 12 6 6.4087 -1.0998 -0.0022 13 6 7.8937 -0.7316 -0.0095 14 1 8.1232 -0.1498 -0.9021 15 6 8.7429 -2.0077 0.0074 16 8 10.1169 -1.6564 0.1874 17 6 10.3966 -1.0042 1.4284 18 6 9.6318 0.3282 1.4812 19 7 8.2151 0.0557 1.1915 20 6 7.2247 0.5256 2.0121 21 1 6.3049 -0.0298 2.1211 22 6 7.4030 1.7157 2.7040 23 7 8.4106 2.5072 2.4030 24 14 6.2132 2.1937 4.0624 25 1 5.0961 2.9847 3.4862 26 1 5.6729 0.9670 4.7015 27 1 6.9245 3.0094 5.0792 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.2486 4.3866 -0.0008 32 1 3.6933 4.6434 -0.0121 33 1 5.1349 2.6240 -0.0106 34 1 6.0367 0.9906 -0.0085 35 1 6.1765 -1.6892 -0.8891 36 1 6.1829 -1.6826 0.8909 37 1 8.4206 -2.6487 0.8280 38 1 8.6226 -2.5377 -0.9374 39 1 10.0803 -1.6415 2.2541 40 1 11.4667 -0.8115 1.5054 41 1 10.0333 1.0150 0.7361 42 1 9.7256 0.7676 2.4743 43 1 8.5354 3.3387 2.8867 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051092143.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:01 Heat of formation + Delta-G solvation = -62.707315 kcal Electronic energy + Delta-G solvation = -28297.017312 eV Core-core repulsion = 24343.382004 eV Total energy + Delta-G solvation = -3953.635308 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.92829 -40.54239 -39.65725 -38.90373 -36.92391 -35.31085 -34.03386 -32.99282 -32.10869 -31.74052 -29.00326 -28.27349 -27.21443 -25.33510 -25.16462 -23.96512 -23.26104 -21.59881 -21.34018 -19.62362 -18.95393 -18.14864 -18.03609 -17.56841 -17.14303 -17.06858 -16.32921 -16.25526 -16.09091 -16.00399 -15.48565 -15.36733 -15.26942 -15.07703 -14.81131 -14.45190 -14.31044 -13.92732 -13.56069 -13.52450 -13.10991 -12.90466 -12.73530 -12.70259 -12.49589 -12.20796 -12.17295 -12.00020 -11.84609 -11.30322 -11.20339 -11.03637 -10.78643 -10.58530 -10.51803 -9.91958 -9.52882 -8.61516 -7.87290 -5.37134 -0.34873 0.19530 1.37573 1.44057 1.50180 1.90896 2.05699 2.26407 2.44565 2.80391 3.04169 3.25562 3.29200 3.44862 3.77512 3.78685 3.96313 4.05117 4.19973 4.25094 4.33559 4.40180 4.40423 4.46111 4.48956 4.61521 4.64401 4.67471 4.69865 4.76375 4.87171 5.01524 5.09488 5.12614 5.31322 5.36455 5.55512 5.64655 5.70220 6.19678 6.30410 6.37923 6.61086 6.73590 7.11632 7.30617 7.76532 8.32947 9.16694 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013956 B = 0.004851 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.886039 B = 5770.773145 C = 6971.651650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.300 6.300 3 C 0.351 3.649 4 N -0.554 5.554 5 C 0.167 3.833 6 C -0.212 4.212 7 C -0.009 4.009 8 C -0.232 4.232 9 C 0.554 3.446 10 O -0.571 6.571 11 N -0.691 5.691 12 C 0.143 3.857 13 C 0.126 3.874 14 H 0.040 0.960 15 C 0.058 3.942 16 O -0.397 6.397 17 C 0.045 3.955 18 C 0.150 3.850 19 N -0.604 5.604 20 C -0.242 4.242 21 H 0.063 0.937 22 C -0.022 4.022 23 N -0.920 5.920 24 Si 0.932 3.068 25 H -0.277 1.277 26 H -0.291 1.291 27 H -0.292 1.292 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.115 0.885 31 H 0.209 0.791 32 H 0.176 0.824 33 H 0.146 0.854 34 H 0.411 0.589 35 H 0.081 0.919 36 H 0.049 0.951 37 H 0.048 0.952 38 H 0.118 0.882 39 H 0.042 0.958 40 H 0.105 0.895 41 H 0.010 0.990 42 H 0.066 0.934 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.514 1.302 -6.157 10.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.205 6.205 3 C 0.171 3.829 4 N -0.278 5.278 5 C 0.011 3.989 6 C -0.232 4.232 7 C -0.035 4.035 8 C -0.238 4.238 9 C 0.342 3.658 10 O -0.453 6.453 11 N -0.343 5.343 12 C 0.019 3.981 13 C 0.020 3.980 14 H 0.058 0.942 15 C -0.021 4.021 16 O -0.315 6.315 17 C -0.033 4.033 18 C 0.024 3.976 19 N -0.330 5.330 20 C -0.372 4.372 21 H 0.081 0.919 22 C -0.219 4.219 23 N -0.566 5.566 24 Si 0.762 3.238 25 H -0.203 1.203 26 H -0.217 1.217 27 H -0.218 1.218 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.133 0.867 31 H 0.225 0.775 32 H 0.193 0.807 33 H 0.164 0.836 34 H 0.249 0.751 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.136 0.864 39 H 0.061 0.939 40 H 0.123 0.877 41 H 0.028 0.972 42 H 0.084 0.916 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.495 0.251 -6.208 11.347 hybrid contribution 0.313 1.058 1.311 1.713 sum -9.182 1.309 -4.897 10.488 Atomic orbital electron populations 1.23140 0.75987 1.04518 1.02631 1.86497 1.24156 1.23845 1.85998 1.19983 0.88200 0.85641 0.89031 1.67532 1.40192 0.98937 1.21187 1.23408 0.93596 0.94045 0.87885 1.22343 0.94770 1.00551 1.05491 1.21944 1.01584 0.90709 0.89262 1.20095 0.91902 0.95324 1.16497 1.18065 0.82500 0.88452 0.76810 1.90724 1.72540 1.29657 1.52364 1.45894 1.04811 1.11048 1.72520 1.21132 0.89240 0.86615 1.01135 1.21557 0.92515 0.93598 0.90314 0.94225 1.22972 0.81578 0.95030 1.02473 1.87804 1.26009 1.78480 1.39221 1.23306 1.00459 0.94118 0.85404 1.21332 0.83221 0.92943 1.00067 1.44293 1.02076 1.62145 1.24525 1.19214 0.97567 1.01044 1.19412 0.91924 1.25442 0.98948 0.95832 1.01716 1.70078 1.32176 1.11950 1.42380 0.85825 0.79649 0.77583 0.80751 1.20298 1.21733 1.21803 0.92104 0.91520 0.86716 0.77456 0.80674 0.83622 0.75106 0.90136 0.93243 0.93375 0.86421 0.93931 0.87743 0.97165 0.91550 0.93859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.38 113.37 1.18 1.94 16 2 O -0.30 -10.58 8.58 -66.40 -0.57 -11.15 16 3 C 0.35 12.09 7.51 85.13 0.64 12.73 16 4 N -0.55 -15.64 9.21 -308.00 -2.84 -18.47 16 5 C 0.17 3.59 11.17 84.71 0.95 4.54 16 6 C -0.21 -4.87 10.09 22.32 0.23 -4.64 16 7 C -0.01 -0.28 9.64 22.72 0.22 -0.06 16 8 C -0.23 -8.38 5.90 -19.91 -0.12 -8.49 16 9 C 0.55 22.60 7.77 86.69 0.67 23.27 16 10 O -0.57 -26.23 15.19 16.85 0.26 -25.98 16 11 N -0.69 -26.80 3.72 -466.29 -1.73 -28.53 16 12 C 0.14 5.29 4.45 86.38 0.38 5.67 16 13 C 0.13 4.77 3.21 44.97 0.14 4.91 16 14 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 15 C 0.06 1.91 6.29 72.08 0.45 2.36 16 16 O -0.40 -14.37 10.74 -148.98 -1.60 -15.97 16 17 C 0.04 1.64 7.00 72.22 0.51 2.14 16 18 C 0.15 6.66 5.41 86.50 0.47 7.13 16 19 N -0.60 -27.20 3.03 -672.91 -2.04 -29.24 16 20 C -0.24 -11.85 7.05 84.03 0.59 -11.26 16 21 H 0.06 3.21 5.80 -2.91 -0.02 3.19 16 22 C -0.02 -1.12 5.04 84.86 0.43 -0.69 16 23 N -0.92 -48.36 11.16 21.65 0.24 -48.11 16 24 Si 0.93 42.46 29.57 68.60 2.03 44.49 16 25 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 26 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 27 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 28 H 0.06 1.39 8.10 -2.39 -0.02 1.37 16 29 H 0.07 1.44 8.11 -2.39 -0.02 1.42 16 30 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.21 2.42 8.06 -2.91 -0.02 2.40 16 32 H 0.18 2.83 8.06 -2.91 -0.02 2.80 16 33 H 0.15 4.52 6.52 -2.91 -0.02 4.50 16 34 H 0.41 16.17 5.40 -92.71 -0.50 15.67 16 35 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.05 2.02 7.58 -2.39 -0.02 2.00 16 37 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 39 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 41 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.07 3.29 6.33 -2.39 -0.02 3.27 16 43 H 0.25 13.01 8.31 -92.71 -0.77 12.24 16 Total: -1.00 -66.51 350.80 1.03 -65.48 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.54 Total: 27.93 kcal Atomic # 6 Polarization: 32.81 SS G_CDS: 6.74 Total: 39.55 kcal Atomic # 7 Polarization: -117.99 SS G_CDS: -6.36 Total: -124.35 kcal Atomic # 8 Polarization: -51.18 SS G_CDS: -1.91 Total: -53.10 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -66.51 1.03 -65.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051092143.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.774 kcal (2) G-P(sol) polarization free energy of solvation -66.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds