Wall clock time and date at job start Tue Mar 31 2020 13:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35421 * 117.00318 * 2 1 4 4 N 1.32239 * 119.80253 * 359.97438 * 3 2 1 5 5 C 1.31873 * 121.80586 * 179.97438 * 4 3 2 6 6 C 1.38352 * 121.18529 * 359.97438 * 5 4 3 7 7 C 1.38338 * 119.45742 * 359.78387 * 6 5 4 8 8 C 1.39988 * 118.34921 * 0.48102 * 7 6 5 9 9 C 1.47526 * 120.59606 * 179.74771 * 8 7 6 10 10 O 1.21589 * 119.99357 * 179.72225 * 9 8 7 11 11 N 1.34772 * 120.00160 * 359.73110 * 9 8 7 12 12 C 1.46497 * 119.99979 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47089 * 179.97438 * 12 11 9 14 14 H 1.08992 * 109.68056 * 59.12753 * 13 12 11 15 15 C 1.53297 * 109.67825 * 179.64331 * 13 12 11 16 16 O 1.42969 * 109.22048 * 172.06219 * 15 13 12 17 17 C 1.42967 * 114.16496 * 297.41746 * 16 15 13 18 18 C 1.53296 * 109.21948 * 62.58080 * 17 16 15 19 19 N 1.47145 * 108.38725 * 307.69738 * 18 17 16 20 20 C 1.36943 * 120.98161 * 230.55906 * 19 18 17 21 21 H 1.08003 * 119.99609 * 149.51178 * 20 19 18 22 22 C 1.38813 * 119.99936 * 329.51370 * 20 19 18 23 23 N 1.31618 * 119.99597 * 163.18302 * 22 20 19 24 24 Si 1.86799 * 120.00038 * 343.18709 * 22 20 19 25 25 H 1.48504 * 109.47152 * 88.95141 * 24 22 20 26 26 H 1.48496 * 109.47011 * 208.95022 * 24 22 20 27 27 H 1.48502 * 109.47175 * 328.95231 * 24 22 20 28 28 H 1.09007 * 109.46361 * 299.99804 * 1 2 3 29 29 H 1.08998 * 109.47189 * 59.99195 * 1 2 3 30 30 H 1.08991 * 109.47054 * 179.97438 * 1 2 3 31 31 H 1.08010 * 119.40728 * 179.97438 * 5 4 3 32 32 H 1.08006 * 120.27388 * 180.02562 * 6 5 4 33 33 H 1.08004 * 120.82443 * 180.22938 * 7 6 5 34 34 H 0.96998 * 120.00173 * 359.97438 * 11 9 8 35 35 H 1.08999 * 109.47619 * 59.99342 * 12 11 9 36 36 H 1.09011 * 109.46936 * 299.99453 * 12 11 9 37 37 H 1.08996 * 109.51344 * 291.98203 * 15 13 12 38 38 H 1.09003 * 109.51604 * 52.08920 * 15 13 12 39 39 H 1.08998 * 109.50905 * 182.50428 * 17 16 15 40 40 H 1.08994 * 109.51116 * 302.65848 * 17 16 15 41 41 H 1.08999 * 109.68064 * 67.42392 * 18 17 16 42 42 H 1.09000 * 109.67919 * 187.97339 * 18 17 16 43 43 H 0.97004 * 119.99149 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2066 0.0000 4 7 1.3199 2.3132 -0.0005 5 6 1.8772 3.5084 0.0000 6 6 3.2527 3.6574 0.0016 7 6 4.0588 2.5332 0.0072 8 6 3.4450 1.2751 0.0008 9 6 4.2571 0.0434 0.0008 10 8 3.7125 -1.0437 0.0003 11 7 5.6024 0.1233 0.0016 12 6 6.4088 -1.0998 0.0021 13 6 7.8938 -0.7316 0.0023 14 1 8.1232 -0.1319 0.8830 15 6 8.7422 -2.0084 0.0119 16 8 10.1166 -1.6616 -0.1745 17 6 10.3973 -1.0349 -1.4284 18 6 9.6336 0.2916 -1.5117 19 7 8.2163 0.0307 -1.2143 20 6 7.2266 0.4836 -2.0454 21 1 6.3032 -0.0690 -2.1366 22 6 7.4104 1.6529 -2.7706 23 7 6.6324 1.9188 -3.7985 24 14 8.7618 2.8488 -2.2879 25 1 10.0192 2.4840 -2.9887 26 1 8.3633 4.2269 -2.6713 27 1 8.9772 2.7860 -0.8199 28 1 -0.3632 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.2486 4.3867 -0.0009 32 1 3.6935 4.6434 0.0024 33 1 5.1351 2.6239 0.0123 34 1 6.0368 0.9905 0.0017 35 1 6.1803 -1.6862 -0.8878 36 1 6.1793 -1.6859 0.8922 37 1 8.6218 -2.5184 0.9676 38 1 8.4193 -2.6663 -0.7951 39 1 11.4675 -0.8446 -1.5088 40 1 10.0810 -1.6888 -2.2411 41 1 10.0382 0.9945 -0.7835 42 1 9.7277 0.7070 -2.5151 43 1 6.7611 2.7358 -4.3054 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051092144.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:05 Heat of formation + Delta-G solvation = -35.258407 kcal Electronic energy + Delta-G solvation = -28274.314402 eV Core-core repulsion = 24321.869368 eV Total energy + Delta-G solvation = -3952.445034 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.65005 -39.17269 -38.25875 -37.67763 -35.43399 -33.69502 -32.67240 -31.63170 -30.97448 -30.55845 -27.60158 -27.14845 -25.80069 -24.03107 -23.44991 -22.76140 -22.12162 -20.13227 -19.89713 -18.34020 -17.44199 -16.89895 -16.55453 -16.06005 -15.88001 -15.77167 -15.09411 -14.95486 -14.84986 -14.50103 -14.06855 -14.01331 -13.95919 -13.86154 -13.35709 -13.15400 -12.67004 -12.57845 -12.39866 -12.13988 -11.89472 -11.62420 -11.59676 -11.16290 -11.08817 -10.80435 -10.58377 -10.37650 -9.86733 -9.84669 -9.75932 -9.67138 -9.46526 -9.14137 -8.72867 -8.44878 -8.19334 -7.06475 -6.07686 -3.51580 0.90690 1.41090 3.17331 3.23116 3.33019 3.34139 3.35773 3.70128 4.13566 4.26591 4.36544 4.38938 4.62660 4.92957 5.03926 5.16343 5.17582 5.32043 5.38594 5.40485 5.44256 5.50523 5.59381 5.68942 5.69821 5.77312 5.87632 5.88670 5.98653 6.04429 6.11026 6.20114 6.25341 6.32634 6.46024 6.48460 6.70519 7.09019 7.38597 7.57443 7.77040 7.85918 8.19223 8.23003 8.75259 8.86328 9.54047 9.91240 11.06030 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014876 B = 0.004712 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.833221 B = 5940.537046 C = 7200.098773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.270 6.270 3 C 0.366 3.634 4 N -0.550 5.550 5 C 0.157 3.843 6 C -0.219 4.219 7 C 0.002 3.998 8 C -0.194 4.194 9 C 0.562 3.438 10 O -0.537 6.537 11 N -0.693 5.693 12 C 0.139 3.861 13 C 0.128 3.872 14 H 0.046 0.954 15 C 0.054 3.946 16 O -0.388 6.388 17 C 0.046 3.954 18 C 0.091 3.909 19 N -0.606 5.606 20 C -0.268 4.268 21 H 0.098 0.902 22 C 0.030 3.970 23 N -0.899 5.899 24 Si 0.878 3.122 25 H -0.287 1.287 26 H -0.303 1.303 27 H -0.271 1.271 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.160 0.840 32 H 0.141 0.859 33 H 0.147 0.853 34 H 0.408 0.592 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.053 0.947 39 H 0.084 0.916 40 H 0.052 0.948 41 H 0.034 0.966 42 H 0.082 0.918 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.232 1.198 8.860 9.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.174 6.174 3 C 0.186 3.814 4 N -0.275 5.275 5 C 0.000 4.000 6 C -0.240 4.240 7 C -0.024 4.024 8 C -0.200 4.200 9 C 0.348 3.652 10 O -0.416 6.416 11 N -0.345 5.345 12 C 0.014 3.986 13 C 0.021 3.979 14 H 0.064 0.936 15 C -0.025 4.025 16 O -0.307 6.307 17 C -0.032 4.032 18 C -0.035 4.035 19 N -0.333 5.333 20 C -0.396 4.396 21 H 0.115 0.885 22 C -0.170 4.170 23 N -0.541 5.541 24 Si 0.708 3.292 25 H -0.214 1.214 26 H -0.231 1.231 27 H -0.196 1.196 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.178 0.822 32 H 0.159 0.841 33 H 0.164 0.836 34 H 0.246 0.754 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.071 0.929 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.100 0.900 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.339 0.110 8.853 10.339 hybrid contribution 1.537 1.692 -0.342 2.311 sum -3.802 1.802 8.511 9.494 Atomic orbital electron populations 1.22895 0.78161 1.02915 1.01995 1.86546 1.21785 1.23141 1.85942 1.19825 0.88185 0.84939 0.88452 1.67404 1.40394 0.98685 1.21004 1.22531 0.92994 0.93611 0.90852 1.21902 0.94684 0.99947 1.07434 1.21747 1.01072 0.90543 0.89010 1.20082 0.91444 0.95375 1.13143 1.17650 0.82250 0.87983 0.77354 1.90766 1.71970 1.28360 1.50516 1.45768 1.04917 1.10598 1.73190 1.21135 0.88993 0.86983 1.01459 1.21459 0.92615 0.93228 0.90585 0.93608 1.22909 0.82296 0.96066 1.01188 1.87830 1.25491 1.79664 1.37675 1.23067 0.99224 0.95124 0.85812 1.22059 0.85481 0.95379 1.00549 1.44440 1.01122 1.64554 1.23204 1.19049 0.97916 1.04405 1.18246 0.88471 1.25341 0.97075 0.97260 0.97330 1.69812 1.40131 1.26313 1.17819 0.87075 0.82018 0.80903 0.79210 1.21424 1.23077 1.19574 0.92580 0.92440 0.88675 0.82235 0.84131 0.83561 0.75430 0.90983 0.91932 0.89332 0.92857 0.89775 0.92987 0.94825 0.90035 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.38 101.05 1.05 1.51 16 2 O -0.27 -4.86 8.58 -39.72 -0.34 -5.20 16 3 C 0.37 6.53 7.51 -16.61 -0.12 6.40 16 4 N -0.55 -8.51 9.21 -12.98 -0.12 -8.63 16 5 C 0.16 2.00 11.17 -17.49 -0.20 1.80 16 6 C -0.22 -2.86 10.09 -39.50 -0.40 -3.26 16 7 C 0.00 0.03 9.64 -38.89 -0.37 -0.34 16 8 C -0.19 -3.56 5.90 -104.69 -0.62 -4.18 16 9 C 0.56 11.39 7.77 -12.48 -0.10 11.29 16 10 O -0.54 -12.24 15.19 -16.48 -0.25 -12.49 16 11 N -0.69 -13.17 3.75 -61.35 -0.23 -13.40 16 12 C 0.14 2.51 4.44 -4.04 -0.02 2.49 16 13 C 0.13 2.30 3.20 -67.42 -0.22 2.09 16 14 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 15 C 0.05 0.88 6.29 37.31 0.23 1.11 16 16 O -0.39 -6.82 10.74 -35.23 -0.38 -7.19 16 17 C 0.05 0.79 6.99 37.31 0.26 1.05 16 18 C 0.09 1.83 4.38 -3.54 -0.02 1.82 16 19 N -0.61 -12.95 2.78 -164.31 -0.46 -13.41 16 20 C -0.27 -6.62 7.59 -15.06 -0.11 -6.74 16 21 H 0.10 2.66 5.99 -52.48 -0.31 2.35 16 22 C 0.03 0.78 5.28 -17.43 -0.09 0.69 16 23 N -0.90 -25.47 13.97 55.49 0.78 -24.70 16 24 Si 0.88 20.25 24.28 -169.99 -4.13 16.13 16 25 H -0.29 -6.54 6.54 56.52 0.37 -6.17 16 26 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.27 -6.07 6.65 56.52 0.38 -5.69 16 28 H 0.06 0.65 8.11 -51.93 -0.42 0.23 16 29 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.16 1.40 8.06 -52.48 -0.42 0.98 16 32 H 0.14 1.42 8.06 -52.48 -0.42 1.00 16 33 H 0.15 2.22 6.52 -52.48 -0.34 1.87 16 34 H 0.41 7.68 5.49 -40.82 -0.22 7.46 16 35 H 0.07 1.46 7.52 -51.93 -0.39 1.07 16 36 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 37 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.03 0.69 6.82 -51.93 -0.35 0.33 16 42 H 0.08 1.78 4.88 -51.93 -0.25 1.52 16 43 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 344.27 15.07 5.19 5.19 Total: -1.00 -32.19 344.27 -6.38 -38.57 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -5.72 Total: 9.39 kcal Atomic # 6 Polarization: 16.46 SS G_CDS: -0.72 Total: 15.74 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: -0.03 Total: -60.13 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.97 Total: -24.89 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.13 Total: 16.13 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.19 -6.38 -38.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051092144.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.314 kcal (2) G-P(sol) polarization free energy of solvation -32.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds