Wall clock time and date at job start Tue Mar 31 2020 13:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35421 * 117.00318 * 2 1 4 4 N 1.32239 * 119.80253 * 359.97438 * 3 2 1 5 5 C 1.31873 * 121.80586 * 179.97438 * 4 3 2 6 6 C 1.38352 * 121.18529 * 359.97438 * 5 4 3 7 7 C 1.38338 * 119.45742 * 359.78387 * 6 5 4 8 8 C 1.39988 * 118.34921 * 0.48102 * 7 6 5 9 9 C 1.47526 * 120.59606 * 179.74771 * 8 7 6 10 10 O 1.21589 * 119.99357 * 179.72225 * 9 8 7 11 11 N 1.34772 * 120.00160 * 359.73110 * 9 8 7 12 12 C 1.46497 * 119.99979 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.47089 * 179.97438 * 12 11 9 14 14 H 1.08992 * 109.68056 * 59.12753 * 13 12 11 15 15 C 1.53297 * 109.67825 * 179.64331 * 13 12 11 16 16 O 1.42969 * 109.22048 * 172.06219 * 15 13 12 17 17 C 1.42967 * 114.16496 * 297.41746 * 16 15 13 18 18 C 1.53296 * 109.21948 * 62.58080 * 17 16 15 19 19 N 1.47145 * 108.38725 * 307.69738 * 18 17 16 20 20 C 1.36943 * 120.98161 * 230.55906 * 19 18 17 21 21 H 1.08003 * 119.99609 * 149.51178 * 20 19 18 22 22 C 1.38813 * 119.99936 * 329.51370 * 20 19 18 23 23 N 1.31618 * 119.99597 * 163.18302 * 22 20 19 24 24 Si 1.86799 * 120.00038 * 343.18709 * 22 20 19 25 25 H 1.48504 * 109.47152 * 88.95141 * 24 22 20 26 26 H 1.48496 * 109.47011 * 208.95022 * 24 22 20 27 27 H 1.48502 * 109.47175 * 328.95231 * 24 22 20 28 28 H 1.09007 * 109.46361 * 299.99804 * 1 2 3 29 29 H 1.08998 * 109.47189 * 59.99195 * 1 2 3 30 30 H 1.08991 * 109.47054 * 179.97438 * 1 2 3 31 31 H 1.08010 * 119.40728 * 179.97438 * 5 4 3 32 32 H 1.08006 * 120.27388 * 180.02562 * 6 5 4 33 33 H 1.08004 * 120.82443 * 180.22938 * 7 6 5 34 34 H 0.96998 * 120.00173 * 359.97438 * 11 9 8 35 35 H 1.08999 * 109.47619 * 59.99342 * 12 11 9 36 36 H 1.09011 * 109.46936 * 299.99453 * 12 11 9 37 37 H 1.08996 * 109.51344 * 291.98203 * 15 13 12 38 38 H 1.09003 * 109.51604 * 52.08920 * 15 13 12 39 39 H 1.08998 * 109.50905 * 182.50428 * 17 16 15 40 40 H 1.08994 * 109.51116 * 302.65848 * 17 16 15 41 41 H 1.08999 * 109.68064 * 67.42392 * 18 17 16 42 42 H 1.09000 * 109.67919 * 187.97339 * 18 17 16 43 43 H 0.97004 * 119.99149 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2066 0.0000 4 7 1.3199 2.3132 -0.0005 5 6 1.8772 3.5084 0.0000 6 6 3.2527 3.6574 0.0016 7 6 4.0588 2.5332 0.0072 8 6 3.4450 1.2751 0.0008 9 6 4.2571 0.0434 0.0008 10 8 3.7125 -1.0437 0.0003 11 7 5.6024 0.1233 0.0016 12 6 6.4088 -1.0998 0.0021 13 6 7.8938 -0.7316 0.0023 14 1 8.1232 -0.1319 0.8830 15 6 8.7422 -2.0084 0.0119 16 8 10.1166 -1.6616 -0.1745 17 6 10.3973 -1.0349 -1.4284 18 6 9.6336 0.2916 -1.5117 19 7 8.2163 0.0307 -1.2143 20 6 7.2266 0.4836 -2.0454 21 1 6.3032 -0.0690 -2.1366 22 6 7.4104 1.6529 -2.7706 23 7 6.6324 1.9188 -3.7985 24 14 8.7618 2.8488 -2.2879 25 1 10.0192 2.4840 -2.9887 26 1 8.3633 4.2269 -2.6713 27 1 8.9772 2.7860 -0.8199 28 1 -0.3632 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.2486 4.3867 -0.0009 32 1 3.6935 4.6434 0.0024 33 1 5.1351 2.6239 0.0123 34 1 6.0368 0.9905 0.0017 35 1 6.1803 -1.6862 -0.8878 36 1 6.1793 -1.6859 0.8922 37 1 8.6218 -2.5184 0.9676 38 1 8.4193 -2.6663 -0.7951 39 1 11.4675 -0.8446 -1.5088 40 1 10.0810 -1.6888 -2.2411 41 1 10.0382 0.9945 -0.7835 42 1 9.7277 0.7070 -2.5151 43 1 6.7611 2.7358 -4.3054 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051092144.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:04 Heat of formation + Delta-G solvation = -59.982889 kcal Electronic energy + Delta-G solvation = -28275.386536 eV Core-core repulsion = 24321.869368 eV Total energy + Delta-G solvation = -3953.517168 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.90373 -40.65370 -39.73977 -38.88068 -36.99970 -35.35325 -34.03513 -33.39867 -32.39941 -31.76229 -29.24840 -28.26429 -27.21433 -25.31856 -25.17768 -24.02483 -23.52964 -21.66091 -21.44801 -19.60852 -18.97206 -18.19288 -18.13041 -17.62230 -17.21126 -17.09692 -16.70429 -16.38313 -16.05900 -15.97428 -15.56876 -15.52991 -15.39299 -15.10296 -14.82382 -14.41783 -14.34869 -13.98016 -13.82102 -13.54279 -13.45582 -13.14105 -12.80648 -12.69234 -12.33009 -12.29950 -12.19017 -12.02729 -11.52989 -11.36091 -11.19566 -11.04183 -10.99950 -10.63889 -10.47408 -9.93462 -9.50368 -8.84394 -8.08743 -5.49545 -0.31210 0.22844 1.33871 1.44648 1.53162 1.92058 2.08194 2.27486 2.44723 2.83908 2.87603 3.04570 3.24592 3.29314 3.78000 3.80225 3.94055 4.00053 4.12277 4.21518 4.27056 4.28783 4.40550 4.41055 4.41525 4.47934 4.48860 4.61448 4.70278 4.71490 4.73348 4.88418 4.92366 4.94573 5.10841 5.21677 5.39214 5.56776 5.88440 6.19948 6.22301 6.23152 6.61174 6.75038 6.87115 7.31745 7.60385 8.01153 9.08821 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014876 B = 0.004712 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.833221 B = 5940.537046 C = 7200.098773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.302 6.302 3 C 0.349 3.651 4 N -0.554 5.554 5 C 0.166 3.834 6 C -0.211 4.211 7 C -0.007 4.007 8 C -0.230 4.230 9 C 0.556 3.444 10 O -0.574 6.574 11 N -0.690 5.690 12 C 0.142 3.858 13 C 0.129 3.871 14 H 0.060 0.940 15 C 0.057 3.943 16 O -0.389 6.389 17 C 0.052 3.948 18 C 0.085 3.915 19 N -0.619 5.619 20 C -0.239 4.239 21 H 0.061 0.939 22 C -0.020 4.020 23 N -0.950 5.950 24 Si 0.938 3.062 25 H -0.281 1.281 26 H -0.313 1.313 27 H -0.256 1.256 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.114 0.886 31 H 0.209 0.791 32 H 0.178 0.822 33 H 0.146 0.854 34 H 0.408 0.592 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.125 0.875 38 H 0.047 0.953 39 H 0.116 0.884 40 H 0.047 0.953 41 H 0.041 0.959 42 H 0.063 0.937 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.265 2.494 10.579 11.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.207 6.207 3 C 0.170 3.830 4 N -0.279 5.279 5 C 0.009 3.991 6 C -0.230 4.230 7 C -0.033 4.033 8 C -0.236 4.236 9 C 0.344 3.656 10 O -0.455 6.455 11 N -0.341 5.341 12 C 0.018 3.982 13 C 0.024 3.976 14 H 0.078 0.922 15 C -0.022 4.022 16 O -0.307 6.307 17 C -0.026 4.026 18 C -0.040 4.040 19 N -0.346 5.346 20 C -0.368 4.368 21 H 0.079 0.921 22 C -0.216 4.216 23 N -0.596 5.596 24 Si 0.767 3.233 25 H -0.208 1.208 26 H -0.242 1.242 27 H -0.181 1.181 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.132 0.868 31 H 0.225 0.775 32 H 0.195 0.805 33 H 0.163 0.837 34 H 0.246 0.754 35 H 0.060 0.940 36 H 0.103 0.897 37 H 0.142 0.858 38 H 0.065 0.935 39 H 0.134 0.866 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.331 1.381 10.613 11.546 hybrid contribution 1.154 1.272 -0.857 1.919 sum -3.177 2.653 9.756 10.597 Atomic orbital electron populations 1.23134 0.76024 1.04478 1.02604 1.86493 1.24151 1.23965 1.86051 1.19984 0.88253 0.85622 0.89124 1.67517 1.40217 0.98954 1.21198 1.23403 0.93687 0.93995 0.87994 1.22331 0.94729 1.00512 1.05455 1.21891 1.01463 0.90655 0.89245 1.20085 0.91905 0.95404 1.16253 1.18067 0.82581 0.88463 0.76517 1.90718 1.72579 1.29802 1.52419 1.45759 1.04811 1.10801 1.72729 1.21138 0.89288 0.86708 1.01081 1.21625 0.92586 0.93966 0.89455 0.92211 1.22997 0.81349 0.94843 1.02961 1.87845 1.25891 1.79419 1.37551 1.23042 1.00611 0.93171 0.85772 1.22129 0.84924 0.97290 0.99651 1.44548 1.01204 1.64758 1.24096 1.18766 0.97281 1.03329 1.17452 0.92092 1.25827 0.99452 0.98895 0.97384 1.69959 1.43008 1.26889 1.19720 0.86094 0.79607 0.78074 0.79509 1.20850 1.24198 1.18052 0.91405 0.92246 0.86752 0.77476 0.80509 0.83652 0.75412 0.93962 0.89655 0.85761 0.93451 0.86581 0.93505 0.94117 0.91836 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 10.38 113.37 1.18 2.01 16 2 O -0.30 -11.24 8.58 -66.34 -0.57 -11.81 16 3 C 0.35 12.68 7.51 85.13 0.64 13.32 16 4 N -0.55 -16.49 9.21 -308.00 -2.84 -19.33 16 5 C 0.17 3.75 11.17 84.71 0.95 4.70 16 6 C -0.21 -4.98 10.09 22.32 0.23 -4.76 16 7 C -0.01 -0.21 9.64 22.72 0.22 0.01 16 8 C -0.23 -8.70 5.90 -19.91 -0.12 -8.82 16 9 C 0.56 23.62 7.77 86.69 0.67 24.30 16 10 O -0.57 -27.52 15.19 16.82 0.26 -27.27 16 11 N -0.69 -27.01 3.75 -466.28 -1.75 -28.76 16 12 C 0.14 5.19 4.44 86.38 0.38 5.57 16 13 C 0.13 4.48 3.20 44.97 0.14 4.63 16 14 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16 15 C 0.06 1.70 6.29 72.08 0.45 2.15 16 16 O -0.39 -12.41 10.74 -148.98 -1.60 -14.01 16 17 C 0.05 1.66 6.99 72.08 0.50 2.17 16 18 C 0.08 3.27 4.38 86.36 0.38 3.65 16 19 N -0.62 -25.99 2.78 -673.75 -1.87 -27.86 16 20 C -0.24 -12.04 7.59 84.03 0.64 -11.40 16 21 H 0.06 3.52 5.99 -2.91 -0.02 3.50 16 22 C -0.02 -1.05 5.28 84.86 0.45 -0.60 16 23 N -0.95 -55.58 13.97 21.65 0.30 -55.28 16 24 Si 0.94 41.81 24.28 68.60 1.67 43.47 16 25 H -0.28 -12.20 6.54 99.48 0.65 -11.55 16 26 H -0.31 -14.40 7.11 99.48 0.71 -13.69 16 27 H -0.26 -10.68 6.65 99.48 0.66 -10.01 16 28 H 0.07 1.55 8.11 -2.38 -0.02 1.53 16 29 H 0.06 1.47 8.10 -2.39 -0.02 1.45 16 30 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.21 2.63 8.06 -2.91 -0.02 2.61 16 32 H 0.18 2.86 8.06 -2.91 -0.02 2.84 16 33 H 0.15 4.43 6.52 -2.91 -0.02 4.41 16 34 H 0.41 15.69 5.49 -92.71 -0.51 15.18 16 35 H 0.04 1.79 7.52 -2.39 -0.02 1.78 16 36 H 0.09 2.72 8.14 -2.38 -0.02 2.70 16 37 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 38 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 40 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.04 1.53 6.82 -2.39 -0.02 1.52 16 42 H 0.06 2.68 4.88 -2.39 -0.01 2.67 16 43 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -72.74 344.27 0.74 -72.00 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: 0.44 Total: 31.91 kcal Atomic # 6 Polarization: 30.23 SS G_CDS: 6.71 Total: 36.94 kcal Atomic # 7 Polarization: -125.08 SS G_CDS: -6.16 Total: -131.23 kcal Atomic # 8 Polarization: -51.17 SS G_CDS: -1.91 Total: -53.08 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 1.67 Total: 43.47 kcal Total: -72.74 0.74 -72.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051092144.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.017 kcal (2) G-P(sol) polarization free energy of solvation -72.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds