Wall clock time and date at job start Tue Mar 31 2020 13:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35665 * 117.00459 * 2 1 4 4 C 1.39284 * 119.61939 * 179.97438 * 3 2 1 5 5 C 1.38332 * 119.30621 * 179.97438 * 4 3 2 6 6 C 1.38785 * 118.55914 * 0.02562 * 5 4 3 7 7 C 1.39126 * 119.18747 * 359.97438 * 6 5 4 8 8 C 1.48148 * 119.68914 * 180.02562 * 7 6 5 9 9 O 1.21515 * 120.00086 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99889 * 180.02562 * 8 7 6 11 11 C 1.46503 * 120.00192 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47398 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.67643 * 59.82901 * 12 11 10 14 14 C 1.53297 * 109.68167 * 180.38504 * 12 11 10 15 15 O 1.42958 * 109.22054 * 172.02549 * 14 12 11 16 16 C 1.42963 * 114.17113 * 297.41825 * 15 14 12 17 17 C 1.53297 * 109.21890 * 62.58074 * 16 15 14 18 18 N 1.47149 * 108.38676 * 307.69988 * 17 16 15 19 19 C 1.36939 * 120.98299 * 230.56016 * 18 17 16 20 20 H 1.07991 * 120.00244 * 148.37082 * 19 18 17 21 21 C 1.38810 * 119.99851 * 328.36980 * 19 18 17 22 22 N 1.31621 * 120.00207 * 349.26136 * 21 19 18 23 23 Si 1.86797 * 120.00151 * 169.26120 * 21 19 18 24 24 H 1.48499 * 109.47336 * 90.00051 * 23 21 19 25 25 H 1.48506 * 109.47010 * 210.00276 * 23 21 19 26 26 H 1.48506 * 109.46933 * 329.99478 * 23 21 19 27 27 N 1.31900 * 119.61378 * 359.72990 * 3 2 1 28 28 H 1.09000 * 109.46820 * 300.00388 * 1 2 3 29 29 H 1.09000 * 109.46763 * 59.99737 * 1 2 3 30 30 H 1.09000 * 109.47163 * 180.02562 * 1 2 3 31 31 H 1.07996 * 120.34806 * 0.02562 * 4 3 2 32 32 H 1.07998 * 120.72316 * 180.02562 * 5 4 3 33 33 H 1.08001 * 120.40834 * 179.97438 * 6 5 4 34 34 H 0.97005 * 120.00183 * 0.02562 * 10 8 7 35 35 H 1.09000 * 109.47327 * 300.00582 * 11 10 8 36 36 H 1.09007 * 109.46818 * 59.99664 * 11 10 8 37 37 H 1.08997 * 109.51327 * 291.94994 * 14 12 11 38 38 H 1.08993 * 109.51177 * 52.10310 * 14 12 11 39 39 H 1.08999 * 109.50995 * 302.66175 * 16 15 14 40 40 H 1.08998 * 109.55427 * 182.52877 * 16 15 14 41 41 H 1.09001 * 109.67804 * 187.97704 * 17 16 15 42 42 H 1.09000 * 109.71373 * 67.44179 * 17 16 15 43 43 H 0.96996 * 120.00607 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 3.4363 1.2723 0.0005 5 6 4.0577 2.5082 0.0000 6 6 3.2667 3.6485 -0.0005 7 6 1.8819 3.5137 -0.0010 8 6 1.0269 4.7235 -0.0022 9 8 1.5356 5.8270 -0.0031 10 7 -0.3152 4.6001 -0.0022 11 6 -1.1608 5.7965 -0.0027 12 6 -2.6332 5.3804 -0.0032 13 1 -2.8464 4.7844 0.8841 14 6 -3.5225 6.6290 -0.0135 15 8 -4.8840 6.2355 -0.2012 16 6 -5.1385 5.5842 -1.4481 17 6 -4.3319 4.2821 -1.5113 18 7 -2.9252 4.5926 -1.2113 19 6 -1.9176 4.1616 -2.0324 20 1 -1.0198 4.7518 -2.1411 21 6 -2.0502 2.9660 -2.7250 22 7 -3.0382 2.1451 -2.4379 23 14 -0.8265 2.5219 -4.0647 24 1 0.3047 1.7650 -3.4708 25 1 -1.4982 1.6844 -5.0908 26 1 -0.3134 3.7635 -4.6977 27 7 1.3192 2.3101 -0.0054 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 4.0239 0.3662 0.0005 32 1 5.1350 2.5841 0.0000 33 1 3.7204 4.6286 -0.0005 34 1 -0.7213 3.7192 -0.0010 35 1 -0.9509 6.3902 0.8869 36 1 -0.9508 6.3894 -0.8930 37 1 -3.4231 7.1546 0.9361 38 1 -3.2179 7.2862 -0.8279 39 1 -4.8398 6.2376 -2.2678 40 1 -6.2016 5.3583 -1.5314 41 1 -4.4079 3.8513 -2.5096 42 1 -4.7166 3.5753 -0.7762 43 1 -3.1307 1.3095 -2.9215 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051191162.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:11 Heat of formation + Delta-G solvation = -64.951164 kcal Electronic energy + Delta-G solvation = -28527.715657 eV Core-core repulsion = 24573.983048 eV Total energy + Delta-G solvation = -3953.732609 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.88468 -40.67674 -39.88378 -38.64669 -36.97190 -35.36805 -33.89864 -33.08035 -32.17766 -31.78012 -29.04079 -28.42575 -27.32801 -25.32201 -25.11352 -23.91409 -23.30239 -21.72497 -21.38303 -19.68104 -18.85821 -18.33818 -17.63702 -17.28085 -17.09056 -17.00546 -16.87160 -16.43227 -16.28217 -16.20056 -15.54942 -15.47801 -15.17131 -15.11929 -14.75871 -14.45617 -14.27486 -14.12106 -13.54939 -13.22927 -13.13224 -12.98058 -12.80731 -12.71016 -12.53307 -12.20794 -12.19748 -12.02172 -11.87258 -11.58382 -11.29171 -11.01296 -10.77813 -10.59253 -10.53179 -9.97085 -9.59594 -8.60901 -7.88977 -5.38147 -0.38792 0.24836 1.31988 1.37191 1.41302 1.71643 2.04704 2.18474 2.41034 2.81634 2.99539 3.06215 3.28663 3.43537 3.85845 3.94230 4.00652 4.02817 4.21100 4.24107 4.32221 4.36452 4.40769 4.47927 4.48413 4.57962 4.62884 4.66112 4.73274 4.77558 4.93730 5.00260 5.07987 5.10873 5.29047 5.35468 5.48166 5.62868 5.67446 6.09722 6.29524 6.36142 6.46788 6.75124 7.10766 7.17770 7.75357 8.31428 9.15316 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012912 B = 0.005393 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.012277 B = 5190.612095 C = 6222.777055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.313 6.313 3 C 0.291 3.709 4 C -0.161 4.161 5 C -0.034 4.034 6 C -0.151 4.151 7 C 0.093 3.907 8 C 0.557 3.443 9 O -0.573 6.573 10 N -0.677 5.677 11 C 0.137 3.863 12 C 0.125 3.875 13 H 0.034 0.966 14 C 0.060 3.940 15 O -0.397 6.397 16 C 0.047 3.953 17 C 0.150 3.850 18 N -0.603 5.603 19 C -0.238 4.238 20 H 0.061 0.939 21 C -0.017 4.017 22 N -0.917 5.917 23 Si 0.931 3.069 24 H -0.294 1.294 25 H -0.290 1.290 26 H -0.284 1.284 27 N -0.532 5.532 28 H 0.055 0.945 29 H 0.034 0.966 30 H 0.123 0.877 31 H 0.178 0.822 32 H 0.199 0.801 33 H 0.159 0.841 34 H 0.417 0.583 35 H 0.087 0.913 36 H 0.056 0.944 37 H 0.119 0.881 38 H 0.051 0.949 39 H 0.044 0.956 40 H 0.105 0.895 41 H 0.066 0.934 42 H 0.007 0.993 43 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.958 -0.151 6.211 10.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.220 6.220 3 C 0.110 3.890 4 C -0.181 4.181 5 C -0.058 4.058 6 C -0.172 4.172 7 C -0.043 4.043 8 C 0.342 3.658 9 O -0.455 6.455 10 N -0.326 5.326 11 C 0.013 3.987 12 C 0.019 3.981 13 H 0.052 0.948 14 C -0.019 4.019 15 O -0.315 6.315 16 C -0.031 4.031 17 C 0.025 3.975 18 N -0.329 5.329 19 C -0.368 4.368 20 H 0.078 0.922 21 C -0.215 4.215 22 N -0.562 5.562 23 Si 0.762 3.238 24 H -0.222 1.222 25 H -0.216 1.216 26 H -0.209 1.209 27 N -0.259 5.259 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.142 0.858 31 H 0.196 0.804 32 H 0.216 0.784 33 H 0.177 0.823 34 H 0.255 0.745 35 H 0.105 0.895 36 H 0.074 0.926 37 H 0.137 0.863 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.123 0.877 41 H 0.084 0.916 42 H 0.025 0.975 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.243 0.196 6.258 10.352 hybrid contribution 0.732 -0.945 -1.282 1.753 sum 8.975 -0.749 4.976 10.290 Atomic orbital electron populations 1.22856 0.76274 1.04170 1.01565 1.86174 1.23505 1.24318 1.88026 1.20336 0.90820 0.84263 0.93595 1.21735 0.90572 1.01746 1.04045 1.21933 1.02714 0.89053 0.92138 1.22228 0.91981 1.02370 1.00644 1.20840 0.93278 0.89713 1.00493 1.18182 0.82744 0.87717 0.77111 1.90688 1.74583 1.26650 1.53535 1.45995 1.05061 1.11691 1.69839 1.21267 0.88764 0.87043 1.01627 1.21568 0.92808 0.93675 0.90085 0.94825 1.22969 0.81652 0.94663 1.02601 1.87804 1.27013 1.77942 1.38784 1.23214 1.00443 0.94150 0.85320 1.21235 0.83263 0.93063 0.99954 1.44250 1.02240 1.62647 1.23764 1.19100 0.98005 1.00424 1.19276 0.92163 1.25389 0.98678 0.95732 1.01665 1.70061 1.33099 1.10509 1.42567 0.85846 0.79707 0.77589 0.80665 1.22184 1.21590 1.20926 1.67102 1.42247 0.98862 1.17697 0.92660 0.94740 0.85847 0.80444 0.78445 0.82325 0.74499 0.89528 0.92571 0.86314 0.93049 0.93759 0.87722 0.91592 0.97521 0.94090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.50 10.38 113.37 1.18 2.68 16 2 O -0.31 -10.04 10.47 -89.81 -0.94 -10.98 16 3 C 0.29 9.41 7.49 84.93 0.64 10.05 16 4 C -0.16 -3.67 10.05 22.54 0.23 -3.44 16 5 C -0.03 -0.66 10.16 22.42 0.23 -0.43 16 6 C -0.15 -4.10 9.63 22.61 0.22 -3.89 16 7 C 0.09 3.33 6.75 41.84 0.28 3.61 16 8 C 0.56 22.23 7.81 86.88 0.68 22.90 16 9 O -0.57 -24.03 16.32 -3.76 -0.06 -24.09 16 10 N -0.68 -27.47 3.77 -465.67 -1.76 -29.23 16 11 C 0.14 5.08 4.45 86.38 0.38 5.47 16 12 C 0.12 4.83 3.21 44.97 0.14 4.98 16 13 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 14 C 0.06 1.97 6.29 72.08 0.45 2.42 16 15 O -0.40 -14.50 10.74 -148.98 -1.60 -16.10 16 16 C 0.05 1.72 6.99 72.08 0.50 2.22 16 17 C 0.15 6.84 5.37 86.36 0.46 7.31 16 18 N -0.60 -27.94 3.03 -673.74 -2.04 -29.98 16 19 C -0.24 -12.08 7.04 84.03 0.59 -11.49 16 20 H 0.06 3.18 5.83 -2.92 -0.02 3.16 16 21 C -0.02 -0.91 5.06 84.86 0.43 -0.48 16 22 N -0.92 -50.00 11.17 21.65 0.24 -49.76 16 23 Si 0.93 44.91 29.57 68.60 2.03 46.94 16 24 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 25 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 26 H -0.28 -13.70 7.11 99.48 0.71 -13.00 16 27 N -0.53 -19.88 8.39 -298.21 -2.50 -22.38 16 28 H 0.05 1.80 8.11 -2.39 -0.02 1.78 16 29 H 0.03 1.37 8.10 -2.39 -0.02 1.35 16 30 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 31 H 0.18 2.78 8.06 -2.91 -0.02 2.75 16 32 H 0.20 1.81 8.06 -2.91 -0.02 1.79 16 33 H 0.16 3.93 7.63 -2.91 -0.02 3.91 16 34 H 0.42 18.54 6.65 -92.70 -0.62 17.93 16 35 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.06 2.24 7.56 -2.38 -0.02 2.23 16 37 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 38 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 41 H 0.07 3.34 6.36 -2.39 -0.02 3.32 16 42 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.25 13.42 8.31 -92.71 -0.77 12.65 16 Total: -1.00 -65.86 355.24 0.21 -65.65 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 0.42 Total: 28.04 kcal Atomic # 6 Polarization: 35.48 SS G_CDS: 6.42 Total: 41.89 kcal Atomic # 7 Polarization: -125.30 SS G_CDS: -6.06 Total: -131.36 kcal Atomic # 8 Polarization: -48.57 SS G_CDS: -2.60 Total: -51.17 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -65.86 0.21 -65.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051191162.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.704 kcal (2) G-P(sol) polarization free energy of solvation -65.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds