Wall clock time and date at job start Tue Mar 31 2020 13:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35646 * 116.99909 * 2 1 4 4 C 1.39351 * 120.53990 * 0.02746 * 3 2 1 5 5 C 1.38302 * 118.43710 * 179.97438 * 4 3 2 6 6 C 1.38762 * 119.44924 * 359.97438 * 5 4 3 7 7 N 1.31378 * 121.06648 * 0.02562 * 6 5 4 8 8 C 1.32857 * 121.69479 * 359.97438 * 7 6 5 9 9 C 1.47835 * 119.78488 * 179.97438 * 8 7 6 10 10 O 1.21556 * 120.00429 * 180.02562 * 9 8 7 11 11 N 1.34779 * 119.99617 * 0.02562 * 9 8 7 12 12 C 1.46500 * 119.99614 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47001 * 179.97438 * 12 11 9 14 14 H 1.08998 * 109.67870 * 59.16072 * 13 12 11 15 15 C 1.53296 * 109.68414 * 179.67938 * 13 12 11 16 16 O 1.42957 * 109.22270 * 172.02340 * 15 13 12 17 17 C 1.42961 * 114.17118 * 297.41960 * 16 15 13 18 18 C 1.53295 * 109.22141 * 62.58027 * 17 16 15 19 19 N 1.47156 * 109.68069 * 298.64510 * 13 12 11 20 20 C 1.36940 * 120.98381 * 9.70804 * 19 13 12 21 21 H 1.07992 * 119.99882 * 328.47600 * 20 19 13 22 22 C 1.38812 * 119.99766 * 148.47021 * 20 19 13 23 23 N 1.31615 * 120.00204 * 349.21432 * 22 20 19 24 24 Si 1.86799 * 119.99859 * 169.22458 * 22 20 19 25 25 H 1.48496 * 109.47309 * 59.99492 * 24 22 20 26 26 H 1.48496 * 109.47229 * 179.97438 * 24 22 20 27 27 H 1.48509 * 109.46876 * 299.99692 * 24 22 20 28 28 H 1.09002 * 109.46942 * 59.99871 * 1 2 3 29 29 H 1.08998 * 109.46897 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47426 * 299.99901 * 1 2 3 31 31 H 1.07993 * 120.78066 * 359.95053 * 4 3 2 32 32 H 1.08001 * 120.27494 * 180.02562 * 5 4 3 33 33 H 1.08005 * 119.47247 * 180.27900 * 6 5 4 34 34 H 0.96997 * 120.00300 * 359.97438 * 11 9 8 35 35 H 1.08998 * 109.47380 * 299.99447 * 12 11 9 36 36 H 1.08996 * 109.47326 * 60.00464 * 12 11 9 37 37 H 1.08999 * 109.51309 * 291.94974 * 15 13 12 38 38 H 1.09008 * 109.50987 * 52.05064 * 15 13 12 39 39 H 1.08998 * 109.51837 * 182.50773 * 17 16 15 40 40 H 1.09005 * 109.51466 * 302.66002 * 17 16 15 41 41 H 1.08998 * 109.68381 * 67.42375 * 18 17 16 42 42 H 1.09003 * 109.68131 * 187.97555 * 18 17 16 43 43 H 0.97000 * 120.00055 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2969 2.3844 0.0006 5 6 1.9695 3.5928 0.0011 6 6 3.3571 3.6012 0.0016 7 7 4.0419 2.4800 0.0010 8 6 3.4410 1.2951 0.0005 9 6 4.2531 0.0598 -0.0007 10 8 3.7075 -1.0264 -0.0016 11 7 5.5986 0.1381 -0.0007 12 6 6.4035 -1.0861 -0.0013 13 6 7.8890 -0.7197 -0.0018 14 1 8.1197 -0.1212 0.8794 15 6 8.7359 -1.9974 0.0057 16 8 10.1104 -1.6522 -0.1822 17 6 10.3903 -1.0248 -1.4359 18 6 9.6281 0.3028 -1.5172 19 7 8.2106 0.0441 -1.2178 20 6 7.2203 0.4993 -2.0469 21 1 6.3031 -0.0611 -2.1508 22 6 7.3956 1.6811 -2.7537 23 7 8.4099 2.4714 -2.4732 24 14 6.1916 2.1497 -4.1029 25 1 4.8280 2.2742 -3.5282 26 1 6.5973 3.4477 -4.6993 27 1 6.1921 1.1000 -5.1533 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2174 2.3527 0.0002 32 1 1.4194 4.5222 0.0020 33 1 3.8828 4.5447 0.0066 34 1 6.0341 1.0048 -0.0003 35 1 6.1739 -1.6723 0.8885 36 1 6.1738 -1.6715 -0.8915 37 1 8.6161 -2.5081 0.9611 38 1 8.4111 -2.6542 -0.8015 39 1 11.4606 -0.8357 -1.5176 40 1 10.0721 -1.6776 -2.2488 41 1 10.0344 1.0046 -0.7889 42 1 9.7215 0.7189 -2.5204 43 1 8.5321 3.2974 -2.9668 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051219738.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:51 Heat of formation + Delta-G solvation = -39.479162 kcal Electronic energy + Delta-G solvation = -28270.639198 eV Core-core repulsion = 24318.011138 eV Total energy + Delta-G solvation = -3952.628060 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.74197 -38.91416 -38.16457 -37.92863 -35.19948 -33.47020 -32.41900 -31.31024 -30.71162 -30.27568 -27.54155 -27.12880 -25.81200 -23.93637 -23.35868 -22.77898 -21.64077 -20.11842 -19.59615 -18.24735 -17.50277 -17.02684 -16.41576 -15.98641 -15.72798 -15.54822 -15.07105 -14.74441 -14.57702 -14.32208 -14.27316 -13.91450 -13.83764 -13.63784 -13.25223 -13.09997 -12.82090 -12.53845 -12.41407 -11.75796 -11.54413 -11.51423 -11.48392 -10.96932 -10.79670 -10.67657 -10.34812 -10.19923 -9.96614 -9.83080 -9.79461 -9.59483 -9.28250 -8.89279 -8.57264 -8.42734 -8.07878 -6.62526 -5.81205 -3.29859 0.81632 1.28565 3.15358 3.20427 3.37089 3.40471 3.44544 3.72338 4.15503 4.42696 4.48571 4.58308 4.59944 4.75139 4.95848 5.00682 5.05981 5.22552 5.24341 5.35874 5.38253 5.60401 5.68980 5.79027 5.88086 5.94581 5.96843 6.09570 6.17374 6.21685 6.29972 6.39394 6.40756 6.59161 6.84027 7.14047 7.21131 7.22785 7.55483 7.80524 7.90487 7.93463 8.37799 8.42533 8.94421 9.15803 9.75878 10.34749 11.26085 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013908 B = 0.004862 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.695611 B = 5757.104450 C = 6943.726768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.272 6.272 3 C 0.129 3.871 4 C -0.180 4.180 5 C -0.116 4.116 6 C 0.059 3.941 7 N -0.404 5.404 8 C 0.057 3.943 9 C 0.562 3.438 10 O -0.541 6.541 11 N -0.675 5.675 12 C 0.135 3.865 13 C 0.125 3.875 14 H 0.042 0.958 15 C 0.057 3.943 16 O -0.393 6.393 17 C 0.035 3.965 18 C 0.145 3.855 19 N -0.590 5.590 20 C -0.252 4.252 21 H 0.071 0.929 22 C 0.017 3.983 23 N -0.899 5.899 24 Si 0.895 3.105 25 H -0.282 1.282 26 H -0.290 1.290 27 H -0.285 1.285 28 H 0.054 0.946 29 H 0.103 0.897 30 H 0.054 0.946 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.164 0.836 34 H 0.424 0.576 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.047 0.953 39 H 0.079 0.921 40 H 0.040 0.960 41 H 0.029 0.971 42 H 0.091 0.909 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.594 0.182 5.653 12.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.181 6.181 3 C 0.078 3.922 4 C -0.207 4.207 5 C -0.136 4.136 6 C -0.101 4.101 7 N -0.115 5.115 8 C -0.082 4.082 9 C 0.346 3.654 10 O -0.419 6.419 11 N -0.327 5.327 12 C 0.011 3.989 13 C 0.018 3.982 14 H 0.059 0.941 15 C -0.023 4.023 16 O -0.311 6.311 17 C -0.043 4.043 18 C 0.019 3.981 19 N -0.316 5.316 20 C -0.382 4.382 21 H 0.088 0.912 22 C -0.183 4.183 23 N -0.543 5.543 24 Si 0.725 3.275 25 H -0.208 1.208 26 H -0.216 1.216 27 H -0.211 1.211 28 H 0.073 0.927 29 H 0.121 0.879 30 H 0.072 0.928 31 H 0.160 0.840 32 H 0.157 0.843 33 H 0.181 0.819 34 H 0.264 0.736 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.065 0.935 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.047 0.953 42 H 0.109 0.891 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.767 -0.682 5.705 12.204 hybrid contribution -1.853 1.216 -1.130 2.488 sum -12.620 0.534 4.575 13.435 Atomic orbital electron populations 1.23170 0.79131 1.04364 1.00935 1.86440 1.20388 1.24636 1.86659 1.20079 0.92447 0.85580 0.94103 1.21669 1.00723 0.91930 1.06355 1.22164 0.95833 0.98212 0.97366 1.22754 0.91190 0.96688 0.99497 1.67758 1.39566 0.97290 1.06930 1.20898 0.88427 0.93313 1.05599 1.17561 0.82696 0.86915 0.78200 1.90764 1.72137 1.27481 1.51496 1.45855 1.04624 1.11571 1.70616 1.21202 0.89913 0.86822 1.00988 1.21431 0.91683 0.93292 0.91840 0.94079 1.22860 0.82796 0.96155 1.00441 1.87793 1.25162 1.79902 1.38276 1.23356 0.99470 0.96591 0.84901 1.21399 0.82990 0.91456 1.02207 1.44070 1.02104 1.63588 1.21818 1.19110 0.97770 1.02237 1.19041 0.91164 1.25060 0.97640 0.95345 1.00265 1.69962 1.30783 1.12081 1.41452 0.86474 0.81308 0.77413 0.82271 1.20802 1.21614 1.21150 0.92747 0.87864 0.92757 0.84001 0.84268 0.81928 0.73576 0.92211 0.91373 0.89925 0.93502 0.90294 0.94145 0.95265 0.89072 0.93537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.83 101.05 0.99 1.19 16 2 O -0.27 -4.35 8.56 -40.59 -0.35 -4.70 16 3 C 0.13 2.09 6.71 -38.55 -0.26 1.83 16 4 C -0.18 -2.20 9.13 -39.14 -0.36 -2.56 16 5 C -0.12 -1.32 10.10 -39.36 -0.40 -1.72 16 6 C 0.06 0.85 11.17 -17.55 -0.20 0.65 16 7 N -0.40 -7.47 9.54 -9.71 -0.09 -7.56 16 8 C 0.06 1.10 6.76 -82.88 -0.56 0.54 16 9 C 0.56 11.96 7.80 -12.33 -0.10 11.86 16 10 O -0.54 -12.31 15.14 -16.63 -0.25 -12.56 16 11 N -0.67 -14.25 3.80 -61.25 -0.23 -14.48 16 12 C 0.14 2.67 4.44 -4.04 -0.02 2.65 16 13 C 0.12 2.55 3.20 -67.42 -0.22 2.34 16 14 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 15 C 0.06 1.03 6.29 37.31 0.23 1.27 16 16 O -0.39 -7.83 10.74 -35.23 -0.38 -8.21 16 17 C 0.03 0.68 6.99 37.31 0.26 0.95 16 18 C 0.14 3.38 5.38 -3.52 -0.02 3.36 16 19 N -0.59 -14.11 3.03 -164.29 -0.50 -14.61 16 20 C -0.25 -6.53 7.09 -15.06 -0.11 -6.64 16 21 H 0.07 1.88 5.83 -52.49 -0.31 1.57 16 22 C 0.02 0.44 5.05 -17.43 -0.09 0.36 16 23 N -0.90 -24.91 11.17 55.49 0.62 -24.29 16 24 Si 0.90 21.88 29.57 -169.99 -5.03 16.86 16 25 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 28 H 0.05 0.45 7.70 -51.93 -0.40 0.05 16 29 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.42 7.70 -51.93 -0.40 0.02 16 31 H 0.14 1.22 6.46 -52.49 -0.34 0.88 16 32 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 33 H 0.16 1.90 8.06 -52.48 -0.42 1.48 16 34 H 0.42 9.58 6.71 -40.82 -0.27 9.31 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.44 7.52 -51.93 -0.39 1.05 16 37 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 39 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.09 2.32 6.37 -51.93 -0.33 1.99 16 43 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 350.65 15.07 5.28 5.28 Total: -1.00 -32.55 350.65 -7.55 -40.10 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -5.80 Total: 8.10 kcal Atomic # 6 Polarization: 16.89 SS G_CDS: -0.83 Total: 16.06 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: -0.20 Total: -60.94 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.98 Total: -25.47 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.55 -7.55 -40.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051219738.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.620 kcal (2) G-P(sol) polarization free energy of solvation -32.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds