Wall clock time and date at job start Tue Mar 31 2020 13:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35646 * 116.99909 * 2 1 4 4 C 1.39351 * 120.53990 * 0.02746 * 3 2 1 5 5 C 1.38302 * 118.43710 * 179.97438 * 4 3 2 6 6 C 1.38762 * 119.44924 * 359.97438 * 5 4 3 7 7 N 1.31378 * 121.06648 * 0.02562 * 6 5 4 8 8 C 1.32857 * 121.69479 * 359.97438 * 7 6 5 9 9 C 1.47835 * 119.78488 * 179.97438 * 8 7 6 10 10 O 1.21556 * 120.00429 * 180.02562 * 9 8 7 11 11 N 1.34779 * 119.99617 * 0.02562 * 9 8 7 12 12 C 1.46500 * 119.99614 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47001 * 179.97438 * 12 11 9 14 14 H 1.08998 * 109.67870 * 59.16072 * 13 12 11 15 15 C 1.53296 * 109.68414 * 179.67938 * 13 12 11 16 16 O 1.42957 * 109.22270 * 172.02340 * 15 13 12 17 17 C 1.42961 * 114.17118 * 297.41960 * 16 15 13 18 18 C 1.53295 * 109.22141 * 62.58027 * 17 16 15 19 19 N 1.47156 * 109.68069 * 298.64510 * 13 12 11 20 20 C 1.36940 * 120.98381 * 9.70804 * 19 13 12 21 21 H 1.07992 * 119.99882 * 328.47600 * 20 19 13 22 22 C 1.38812 * 119.99766 * 148.47021 * 20 19 13 23 23 N 1.31615 * 120.00204 * 349.21432 * 22 20 19 24 24 Si 1.86799 * 119.99859 * 169.22458 * 22 20 19 25 25 H 1.48496 * 109.47309 * 59.99492 * 24 22 20 26 26 H 1.48496 * 109.47229 * 179.97438 * 24 22 20 27 27 H 1.48509 * 109.46876 * 299.99692 * 24 22 20 28 28 H 1.09002 * 109.46942 * 59.99871 * 1 2 3 29 29 H 1.08998 * 109.46897 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47426 * 299.99901 * 1 2 3 31 31 H 1.07993 * 120.78066 * 359.95053 * 4 3 2 32 32 H 1.08001 * 120.27494 * 180.02562 * 5 4 3 33 33 H 1.08005 * 119.47247 * 180.27900 * 6 5 4 34 34 H 0.96997 * 120.00300 * 359.97438 * 11 9 8 35 35 H 1.08998 * 109.47380 * 299.99447 * 12 11 9 36 36 H 1.08996 * 109.47326 * 60.00464 * 12 11 9 37 37 H 1.08999 * 109.51309 * 291.94974 * 15 13 12 38 38 H 1.09008 * 109.50987 * 52.05064 * 15 13 12 39 39 H 1.08998 * 109.51837 * 182.50773 * 17 16 15 40 40 H 1.09005 * 109.51466 * 302.66002 * 17 16 15 41 41 H 1.08998 * 109.68381 * 67.42375 * 18 17 16 42 42 H 1.09003 * 109.68131 * 187.97555 * 18 17 16 43 43 H 0.97000 * 120.00055 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2969 2.3844 0.0006 5 6 1.9695 3.5928 0.0011 6 6 3.3571 3.6012 0.0016 7 7 4.0419 2.4800 0.0010 8 6 3.4410 1.2951 0.0005 9 6 4.2531 0.0598 -0.0007 10 8 3.7075 -1.0264 -0.0016 11 7 5.5986 0.1381 -0.0007 12 6 6.4035 -1.0861 -0.0013 13 6 7.8890 -0.7197 -0.0018 14 1 8.1197 -0.1212 0.8794 15 6 8.7359 -1.9974 0.0057 16 8 10.1104 -1.6522 -0.1822 17 6 10.3903 -1.0248 -1.4359 18 6 9.6281 0.3028 -1.5172 19 7 8.2106 0.0441 -1.2178 20 6 7.2203 0.4993 -2.0469 21 1 6.3031 -0.0611 -2.1508 22 6 7.3956 1.6811 -2.7537 23 7 8.4099 2.4714 -2.4732 24 14 6.1916 2.1497 -4.1029 25 1 4.8280 2.2742 -3.5282 26 1 6.5973 3.4477 -4.6993 27 1 6.1921 1.1000 -5.1533 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2174 2.3527 0.0002 32 1 1.4194 4.5222 0.0020 33 1 3.8828 4.5447 0.0066 34 1 6.0341 1.0048 -0.0003 35 1 6.1739 -1.6723 0.8885 36 1 6.1738 -1.6715 -0.8915 37 1 8.6161 -2.5081 0.9611 38 1 8.4111 -2.6542 -0.8015 39 1 11.4606 -0.8357 -1.5176 40 1 10.0721 -1.6776 -2.2488 41 1 10.0344 1.0046 -0.7889 42 1 9.7215 0.7189 -2.5204 43 1 8.5321 3.2974 -2.9668 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051219738.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:50 Heat of formation + Delta-G solvation = -62.677346 kcal Electronic energy + Delta-G solvation = -28271.645147 eV Core-core repulsion = 24318.011138 eV Total energy + Delta-G solvation = -3953.634009 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.91023 -40.49797 -39.63010 -39.14252 -36.90172 -35.27328 -33.66793 -32.97704 -32.13334 -31.71921 -29.00586 -28.36531 -27.32096 -25.33144 -25.13209 -23.84919 -23.27560 -21.60820 -21.35068 -19.49011 -18.84723 -18.30568 -18.02413 -17.56787 -17.14187 -16.93120 -16.37475 -16.28005 -16.12975 -16.07604 -15.46749 -15.37562 -15.30338 -15.00036 -14.72105 -14.54302 -14.37425 -14.13177 -13.50056 -13.43978 -13.11045 -12.90490 -12.73477 -12.51018 -12.43337 -12.39842 -12.16831 -12.00208 -11.84833 -11.31802 -11.21347 -10.83507 -10.72921 -10.55524 -10.47158 -9.89241 -9.45611 -8.58661 -7.85785 -5.35421 -0.32593 0.23775 1.38477 1.39517 1.45608 1.82531 2.17597 2.30497 2.46258 2.87273 3.03930 3.28279 3.34013 3.46065 3.61628 3.76852 3.99543 4.03716 4.20363 4.24473 4.30002 4.33369 4.35804 4.48653 4.49570 4.60359 4.64437 4.67008 4.69095 4.74483 4.89840 4.97633 5.01645 5.11960 5.30530 5.41767 5.58162 5.65293 5.70401 6.23192 6.30891 6.39161 6.61423 6.91562 7.13954 7.32902 7.78197 8.34120 9.19246 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013908 B = 0.004862 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.695611 B = 5757.104450 C = 6943.726768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.307 6.307 3 C 0.123 3.877 4 C -0.170 4.170 5 C -0.089 4.089 6 C 0.043 3.957 7 N -0.444 5.444 8 C 0.004 3.996 9 C 0.557 3.443 10 O -0.568 6.568 11 N -0.682 5.682 12 C 0.140 3.860 13 C 0.125 3.875 14 H 0.034 0.966 15 C 0.060 3.940 16 O -0.396 6.396 17 C 0.047 3.953 18 C 0.150 3.850 19 N -0.604 5.604 20 C -0.239 4.239 21 H 0.060 0.940 22 C -0.024 4.024 23 N -0.923 5.923 24 Si 0.943 3.057 25 H -0.289 1.289 26 H -0.288 1.288 27 H -0.287 1.287 28 H 0.072 0.928 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.186 0.814 32 H 0.192 0.808 33 H 0.184 0.816 34 H 0.416 0.584 35 H 0.082 0.918 36 H 0.051 0.949 37 H 0.119 0.881 38 H 0.051 0.949 39 H 0.106 0.894 40 H 0.044 0.956 41 H 0.006 0.994 42 H 0.066 0.934 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.699 0.676 6.135 15.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.218 6.218 3 C 0.072 3.928 4 C -0.196 4.196 5 C -0.108 4.108 6 C -0.119 4.119 7 N -0.156 5.156 8 C -0.133 4.133 9 C 0.343 3.657 10 O -0.448 6.448 11 N -0.332 5.332 12 C 0.016 3.984 13 C 0.019 3.981 14 H 0.051 0.949 15 C -0.018 4.018 16 O -0.315 6.315 17 C -0.031 4.031 18 C 0.025 3.975 19 N -0.330 5.330 20 C -0.369 4.369 21 H 0.077 0.923 22 C -0.221 4.221 23 N -0.569 5.569 24 Si 0.773 3.227 25 H -0.216 1.216 26 H -0.214 1.214 27 H -0.213 1.213 28 H 0.091 0.909 29 H 0.132 0.868 30 H 0.097 0.903 31 H 0.203 0.797 32 H 0.209 0.791 33 H 0.201 0.799 34 H 0.253 0.747 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.137 0.863 38 H 0.069 0.931 39 H 0.124 0.876 40 H 0.063 0.937 41 H 0.024 0.976 42 H 0.084 0.916 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -12.875 -0.232 6.197 14.291 hybrid contribution -1.342 1.107 -1.214 2.121 sum -14.217 0.875 4.983 15.090 Atomic orbital electron populations 1.23539 0.76147 1.05924 1.02965 1.86381 1.23606 1.25255 1.86551 1.20233 0.91815 0.87097 0.93703 1.22173 1.02623 0.90456 1.04363 1.22699 0.94648 1.00034 0.93417 1.23331 0.93123 0.96204 0.99271 1.67612 1.41389 0.98177 1.08380 1.20600 0.89727 0.92640 1.10284 1.18053 0.82649 0.87862 0.77157 1.90710 1.72499 1.28717 1.52880 1.45900 1.05028 1.11241 1.71021 1.21183 0.89395 0.86629 1.01162 1.21562 0.92645 0.93895 0.89996 0.94859 1.22961 0.81504 0.94799 1.02581 1.87798 1.25929 1.79587 1.38159 1.23221 1.00452 0.94271 0.85169 1.21244 0.83229 0.93110 0.99953 1.44273 1.02063 1.63797 1.22889 1.19081 0.97548 1.01624 1.18625 0.92285 1.25504 0.98893 0.95674 1.02041 1.70073 1.32043 1.12332 1.42432 0.85731 0.79520 0.77018 0.80437 1.21580 1.21378 1.21336 0.90913 0.86822 0.90279 0.79679 0.79124 0.79949 0.74653 0.90024 0.93022 0.86327 0.93100 0.87573 0.93749 0.97584 0.91595 0.94056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.83 113.37 1.11 1.26 16 2 O -0.31 -9.67 8.56 -68.62 -0.59 -10.26 16 3 C 0.12 3.88 6.71 22.94 0.15 4.03 16 4 C -0.17 -3.54 9.13 22.55 0.21 -3.34 16 5 C -0.09 -1.67 10.10 22.41 0.23 -1.44 16 6 C 0.04 1.16 11.17 84.89 0.95 2.11 16 7 N -0.44 -16.68 9.54 -184.62 -1.76 -18.44 16 8 C 0.00 0.17 6.76 41.93 0.28 0.46 16 9 C 0.56 24.71 7.80 86.78 0.68 25.39 16 10 O -0.57 -26.87 15.14 17.10 0.26 -26.61 16 11 N -0.68 -30.03 3.80 -465.98 -1.77 -31.81 16 12 C 0.14 5.67 4.44 86.38 0.38 6.05 16 13 C 0.13 5.17 3.20 44.97 0.14 5.31 16 14 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 15 C 0.06 2.10 6.29 72.08 0.45 2.56 16 16 O -0.40 -15.11 10.74 -148.98 -1.60 -16.71 16 17 C 0.05 1.79 6.99 72.08 0.50 2.30 16 18 C 0.15 7.13 5.38 86.35 0.46 7.60 16 19 N -0.60 -29.52 3.03 -673.68 -2.04 -31.56 16 20 C -0.24 -12.72 7.09 84.03 0.60 -12.13 16 21 H 0.06 3.28 5.83 -2.91 -0.02 3.26 16 22 C -0.02 -1.33 5.05 84.86 0.43 -0.90 16 23 N -0.92 -52.68 11.17 21.65 0.24 -52.44 16 24 Si 0.94 46.09 29.57 68.60 2.03 48.12 16 25 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 26 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 27 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 28 H 0.07 0.97 7.70 -2.39 -0.02 0.95 16 29 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.08 0.95 7.70 -2.39 -0.02 0.93 16 31 H 0.19 2.15 6.46 -2.91 -0.02 2.13 16 32 H 0.19 1.63 8.06 -2.91 -0.02 1.61 16 33 H 0.18 3.95 8.06 -2.91 -0.02 3.93 16 34 H 0.42 19.75 6.71 -92.71 -0.62 19.13 16 35 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 36 H 0.05 2.24 7.52 -2.39 -0.02 2.23 16 37 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 38 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 40 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 41 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 42 H 0.07 3.46 6.37 -2.39 -0.02 3.44 16 43 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -75.00 350.65 1.77 -73.23 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: 0.42 Total: 27.23 kcal Atomic # 6 Polarization: 32.66 SS G_CDS: 6.58 Total: 39.24 kcal Atomic # 7 Polarization: -128.91 SS G_CDS: -5.33 Total: -134.24 kcal Atomic # 8 Polarization: -51.65 SS G_CDS: -1.93 Total: -53.58 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -75.00 1.77 -73.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051219738.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.554 kcal (2) G-P(sol) polarization free energy of solvation -75.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds