Wall clock time and date at job start Tue Mar 31 2020 13:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42897 * 109.46552 * 2 1 4 4 C 1.35353 * 116.99755 * 180.02562 * 3 2 1 5 5 N 1.30554 * 125.44810 * 180.35130 * 4 3 2 6 6 C 1.36332 * 108.38602 * 180.16610 * 5 4 3 7 7 C 1.47362 * 126.41767 * 179.82538 * 6 5 4 8 8 O 1.21621 * 120.00171 * 179.68814 * 7 6 5 9 9 N 1.34779 * 119.99983 * 359.68289 * 7 6 5 10 10 C 1.47889 * 134.34522 * 180.02562 * 9 7 6 11 11 C 1.52374 * 85.59061 * 156.51607 * 10 9 7 12 12 C 1.47894 * 134.33969 * 0.02562 * 9 7 6 13 13 C 1.53656 * 116.38986 * 141.35925 * 11 10 9 14 14 C 1.54597 * 102.73161 * 95.48609 * 13 11 10 15 15 N 1.47136 * 107.36670 * 20.75459 * 14 13 11 16 16 C 1.36938 * 125.58996 * 180.66450 * 15 14 13 17 17 H 1.08002 * 119.99889 * 180.02562 * 16 15 14 18 18 C 1.38811 * 120.00054 * 0.02562 * 16 15 14 19 19 N 1.31624 * 119.99551 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00171 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46947 * 90.00409 * 20 18 16 22 22 H 1.48501 * 109.46857 * 210.00030 * 20 18 16 23 23 H 1.48501 * 109.46963 * 329.99874 * 20 18 16 24 24 C 1.47729 * 108.82430 * 0.92790 * 15 14 13 25 25 C 1.35919 * 107.16877 * 359.55979 * 6 5 4 26 26 O 1.34204 * 125.45013 * 0.02587 * 4 3 2 27 27 H 1.09008 * 109.46875 * 299.99499 * 1 2 3 28 28 H 1.08994 * 109.47790 * 59.99508 * 1 2 3 29 29 H 1.09001 * 109.46700 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46990 * 240.00551 * 2 1 3 31 31 H 1.08991 * 109.47280 * 119.99951 * 2 1 3 32 32 H 1.09000 * 113.85076 * 42.35026 * 10 9 7 33 33 H 1.08997 * 113.96534 * 270.69625 * 10 9 7 34 34 H 1.08995 * 113.85635 * 89.31595 * 12 9 7 35 35 H 1.09003 * 113.85124 * 317.64910 * 12 9 7 36 36 H 1.08999 * 110.75504 * 337.17811 * 13 11 10 37 37 H 1.08994 * 110.91686 * 213.87072 * 13 11 10 38 38 H 1.09005 * 109.86535 * 261.31083 * 14 13 11 39 39 H 1.08999 * 109.98373 * 140.26332 * 14 13 11 40 40 H 0.97006 * 119.99721 * 180.02562 * 19 18 16 41 41 H 1.09007 * 110.39933 * 96.33789 * 24 15 14 42 42 H 1.08995 * 110.40116 * 218.74649 * 24 15 14 43 43 H 1.08002 * 126.45105 * 180.26559 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3481 1.5247 -0.0005 5 7 3.9593 2.6783 0.0059 6 6 5.3038 2.4526 -0.0009 7 6 6.3629 3.4773 -0.0008 8 8 7.5323 3.1432 -0.0016 9 7 6.0356 4.7847 0.0002 10 6 6.8106 6.0443 0.0001 11 6 5.5619 6.6750 -0.6039 12 6 4.7585 5.5306 0.0017 13 6 5.2083 8.0895 -0.1189 14 6 5.8448 8.9902 -1.2022 15 7 6.0347 8.1637 -2.4045 16 6 6.5847 8.5880 -3.5846 17 1 6.6808 7.9019 -4.4132 18 6 7.0188 9.9000 -3.7159 19 7 6.9021 10.7359 -2.7059 20 14 7.7698 10.4787 -5.3254 21 1 6.6996 11.0062 -6.2095 22 1 8.7598 11.5513 -5.0523 23 1 8.4471 9.3385 -5.9938 24 6 5.5289 6.8027 -2.1322 25 6 5.4845 1.1055 -0.0018 26 8 4.2630 0.5429 -0.0016 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 7.6684 6.0340 -0.6722 33 1 7.0537 6.4146 0.9960 34 1 4.3727 5.7422 0.9989 35 1 4.0058 5.1170 -0.6695 36 1 5.6528 8.2857 0.8568 37 1 4.1280 8.2305 -0.0850 38 1 6.8076 9.3643 -0.8540 39 1 5.1825 9.8259 -1.4280 40 1 7.2051 11.6528 -2.7978 41 1 4.5085 6.6958 -2.5005 42 1 6.1789 6.0571 -2.5898 43 1 6.4308 0.5850 -0.0026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072898286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:12 Heat of formation + Delta-G solvation = 29.164917 kcal Electronic energy + Delta-G solvation = -26964.351420 eV Core-core repulsion = 23014.699990 eV Total energy + Delta-G solvation = -3949.651429 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.65718 -40.39596 -39.30716 -38.15320 -35.53732 -35.10652 -32.40720 -32.13881 -29.96319 -29.48499 -28.32260 -26.34353 -25.75237 -24.39002 -23.90670 -23.14071 -22.30073 -20.30944 -20.06938 -18.67615 -18.09563 -17.84632 -17.21231 -16.78115 -16.50364 -15.98155 -15.78526 -15.29215 -15.18618 -14.69880 -14.33500 -13.77481 -13.66589 -13.59433 -13.37061 -13.24788 -12.86363 -12.48501 -12.26046 -12.16574 -11.82856 -11.78479 -11.66946 -11.14219 -11.09992 -10.89326 -10.85431 -10.66463 -10.42706 -10.28262 -10.04365 -9.76880 -9.63502 -9.56213 -8.95083 -8.54879 -8.44782 -6.78239 -5.66608 -2.99559 0.93327 1.61866 1.89392 2.43472 2.90650 3.31637 3.43975 3.49123 3.50984 4.10512 4.29179 4.30114 4.52507 4.61025 4.65123 4.73785 4.82141 5.12217 5.16274 5.20276 5.24975 5.30764 5.43273 5.50516 5.55614 5.66847 5.76989 5.79139 5.87351 6.06365 6.09860 6.27948 6.30910 6.38786 6.54837 6.60483 6.75722 6.80403 7.30651 7.60868 7.66890 7.81755 7.87654 8.19242 8.30426 9.27149 9.86826 10.52797 11.45102 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018691 B = 0.002735 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.663189 B =10236.991089 C =10613.709720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 O -0.245 6.245 4 C 0.380 3.620 5 N -0.448 5.448 6 C -0.034 4.034 7 C 0.618 3.382 8 O -0.543 6.543 9 N -0.621 5.621 10 C 0.132 3.868 11 C -0.108 4.108 12 C 0.129 3.871 13 C -0.130 4.130 14 C 0.178 3.822 15 N -0.605 5.605 16 C -0.225 4.225 17 H 0.077 0.923 18 C -0.009 4.009 19 N -0.922 5.922 20 Si 0.911 3.089 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.162 3.838 25 C -0.004 4.004 26 O -0.228 6.228 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.046 0.954 39 H 0.044 0.956 40 H 0.251 0.749 41 H 0.025 0.975 42 H 0.039 0.961 43 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.100 -21.592 9.570 26.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.153 6.153 4 C 0.133 3.867 5 N -0.194 5.194 6 C -0.153 4.153 7 C 0.406 3.594 8 O -0.422 6.422 9 N -0.353 5.353 10 C 0.011 3.989 11 C -0.110 4.110 12 C 0.006 3.994 13 C -0.169 4.169 14 C 0.054 3.946 15 N -0.332 5.332 16 C -0.353 4.353 17 H 0.095 0.905 18 C -0.205 4.205 19 N -0.570 5.570 20 Si 0.742 3.258 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.036 3.964 25 C -0.076 4.076 26 O -0.119 6.119 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.043 0.957 42 H 0.057 0.943 43 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -10.881 -21.112 9.481 25.573 hybrid contribution 0.622 -0.564 -0.788 1.151 sum -10.259 -21.675 8.693 25.508 Atomic orbital electron populations 1.21814 0.91203 1.03615 1.04314 1.23046 0.96886 0.79428 1.02977 1.86394 1.08960 1.30711 1.89232 1.23381 0.83457 0.81633 0.98185 1.71229 1.03944 1.21096 1.23098 1.21689 0.90193 0.93789 1.09651 1.16261 0.85844 0.80375 0.76927 1.90828 1.18074 1.80682 1.52576 1.49995 1.11793 1.03265 1.70296 1.23041 0.96748 0.78316 1.00792 1.22516 0.94979 0.94724 0.98765 1.23085 0.87752 0.87567 1.00988 1.22655 1.00699 0.93714 0.99842 1.21208 0.98636 0.91173 0.83611 1.44565 1.71614 1.05352 1.11633 1.19047 1.32291 0.94658 0.89334 0.90536 1.24781 1.01590 0.96270 0.97844 1.69965 1.52587 1.04881 1.29603 0.86125 0.78625 0.78226 0.82839 1.21673 1.21714 1.20740 1.21034 0.96997 0.88964 0.89369 1.24927 0.85787 0.92853 1.04068 1.84374 1.16246 1.39250 1.72021 0.90941 0.90855 0.89486 0.90815 0.90882 0.89325 0.89583 0.89688 0.89008 0.91768 0.91643 0.93547 0.93786 0.93819 0.95713 0.94270 0.74837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 10.28 37.16 0.38 -0.22 16 2 C 0.05 0.30 6.38 37.16 0.24 0.54 16 3 O -0.24 -2.46 10.19 -40.98 -0.42 -2.88 16 4 C 0.38 4.51 8.98 52.22 0.47 4.98 16 5 N -0.45 -6.36 9.80 -11.71 -0.11 -6.47 16 6 C -0.03 -0.49 6.94 -82.99 -0.58 -1.06 16 7 C 0.62 10.35 8.04 -12.55 -0.10 10.25 16 8 O -0.54 -10.29 17.61 5.26 0.09 -10.20 16 9 N -0.62 -10.17 3.62 -188.20 -0.68 -10.85 16 10 C 0.13 2.22 8.15 -3.60 -0.03 2.19 16 11 C -0.11 -1.86 0.99 -154.85 -0.15 -2.02 16 12 C 0.13 1.91 7.24 -3.60 -0.03 1.88 16 13 C -0.13 -2.30 6.36 -25.55 -0.16 -2.46 16 14 C 0.18 4.24 5.39 -2.86 -0.02 4.22 16 15 N -0.61 -15.45 3.41 -170.50 -0.58 -16.03 16 16 C -0.22 -6.33 10.28 -15.06 -0.15 -6.49 16 17 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 18 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 19 N -0.92 -27.12 10.30 55.49 0.57 -26.55 16 20 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.16 3.42 6.63 -3.16 -0.02 3.40 16 25 C 0.00 -0.05 11.93 29.90 0.36 0.31 16 26 O -0.23 -2.36 10.20 -17.74 -0.18 -2.55 16 27 H 0.07 0.30 8.14 -51.92 -0.42 -0.12 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 1.66 8.12 -51.93 -0.42 1.24 16 33 H 0.09 1.28 8.04 -51.93 -0.42 0.86 16 34 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.09 1.39 7.51 -51.93 -0.39 1.00 16 36 H 0.06 1.00 7.99 -51.93 -0.41 0.59 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.05 1.22 7.40 -51.93 -0.38 0.83 16 39 H 0.04 1.16 7.47 -51.93 -0.39 0.77 16 40 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.03 0.52 8.14 -51.92 -0.42 0.10 16 42 H 0.04 0.85 8.07 -51.93 -0.42 0.44 16 43 H 0.24 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 363.00 15.07 5.47 5.47 Total: -1.00 -33.97 363.00 -6.94 -40.91 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -6.19 Total: -3.41 kcal Atomic # 6 Polarization: 15.06 SS G_CDS: 0.11 Total: 15.17 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: -0.81 Total: -59.90 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.51 Total: -15.62 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.97 -6.94 -40.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072898286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.077 kcal (2) G-P(sol) polarization free energy of solvation -33.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds