Wall clock time and date at job start Tue Mar 31 2020 13:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42897 * 109.46552 * 2 1 4 4 C 1.35353 * 116.99755 * 180.02562 * 3 2 1 5 5 N 1.30554 * 125.44810 * 180.35130 * 4 3 2 6 6 C 1.36332 * 108.38602 * 180.16610 * 5 4 3 7 7 C 1.47362 * 126.41767 * 179.82538 * 6 5 4 8 8 O 1.21621 * 120.00171 * 179.68814 * 7 6 5 9 9 N 1.34779 * 119.99983 * 359.68289 * 7 6 5 10 10 C 1.47889 * 134.34522 * 180.02562 * 9 7 6 11 11 C 1.52374 * 85.59061 * 156.51607 * 10 9 7 12 12 C 1.47894 * 134.33969 * 0.02562 * 9 7 6 13 13 C 1.53656 * 116.38986 * 141.35925 * 11 10 9 14 14 C 1.54597 * 102.73161 * 95.48609 * 13 11 10 15 15 N 1.47136 * 107.36670 * 20.75459 * 14 13 11 16 16 C 1.36938 * 125.58996 * 180.66450 * 15 14 13 17 17 H 1.08002 * 119.99889 * 180.02562 * 16 15 14 18 18 C 1.38811 * 120.00054 * 0.02562 * 16 15 14 19 19 N 1.31624 * 119.99551 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00171 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46947 * 90.00409 * 20 18 16 22 22 H 1.48501 * 109.46857 * 210.00030 * 20 18 16 23 23 H 1.48501 * 109.46963 * 329.99874 * 20 18 16 24 24 C 1.47729 * 108.82430 * 0.92790 * 15 14 13 25 25 C 1.35919 * 107.16877 * 359.55979 * 6 5 4 26 26 O 1.34204 * 125.45013 * 0.02587 * 4 3 2 27 27 H 1.09008 * 109.46875 * 299.99499 * 1 2 3 28 28 H 1.08994 * 109.47790 * 59.99508 * 1 2 3 29 29 H 1.09001 * 109.46700 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46990 * 240.00551 * 2 1 3 31 31 H 1.08991 * 109.47280 * 119.99951 * 2 1 3 32 32 H 1.09000 * 113.85076 * 42.35026 * 10 9 7 33 33 H 1.08997 * 113.96534 * 270.69625 * 10 9 7 34 34 H 1.08995 * 113.85635 * 89.31595 * 12 9 7 35 35 H 1.09003 * 113.85124 * 317.64910 * 12 9 7 36 36 H 1.08999 * 110.75504 * 337.17811 * 13 11 10 37 37 H 1.08994 * 110.91686 * 213.87072 * 13 11 10 38 38 H 1.09005 * 109.86535 * 261.31083 * 14 13 11 39 39 H 1.08999 * 109.98373 * 140.26332 * 14 13 11 40 40 H 0.97006 * 119.99721 * 180.02562 * 19 18 16 41 41 H 1.09007 * 110.39933 * 96.33789 * 24 15 14 42 42 H 1.08995 * 110.40116 * 218.74649 * 24 15 14 43 43 H 1.08002 * 126.45105 * 180.26559 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3481 1.5247 -0.0005 5 7 3.9593 2.6783 0.0059 6 6 5.3038 2.4526 -0.0009 7 6 6.3629 3.4773 -0.0008 8 8 7.5323 3.1432 -0.0016 9 7 6.0356 4.7847 0.0002 10 6 6.8106 6.0443 0.0001 11 6 5.5619 6.6750 -0.6039 12 6 4.7585 5.5306 0.0017 13 6 5.2083 8.0895 -0.1189 14 6 5.8448 8.9902 -1.2022 15 7 6.0347 8.1637 -2.4045 16 6 6.5847 8.5880 -3.5846 17 1 6.6808 7.9019 -4.4132 18 6 7.0188 9.9000 -3.7159 19 7 6.9021 10.7359 -2.7059 20 14 7.7698 10.4787 -5.3254 21 1 6.6996 11.0062 -6.2095 22 1 8.7598 11.5513 -5.0523 23 1 8.4471 9.3385 -5.9938 24 6 5.5289 6.8027 -2.1322 25 6 5.4845 1.1055 -0.0018 26 8 4.2630 0.5429 -0.0016 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 7.6684 6.0340 -0.6722 33 1 7.0537 6.4146 0.9960 34 1 4.3727 5.7422 0.9989 35 1 4.0058 5.1170 -0.6695 36 1 5.6528 8.2857 0.8568 37 1 4.1280 8.2305 -0.0850 38 1 6.8076 9.3643 -0.8540 39 1 5.1825 9.8259 -1.4280 40 1 7.2051 11.6528 -2.7978 41 1 4.5085 6.6958 -2.5005 42 1 6.1789 6.0571 -2.5898 43 1 6.4308 0.5850 -0.0026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072898286.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:12 Heat of formation + Delta-G solvation = 3.600619 kcal Electronic energy + Delta-G solvation = -26965.459971 eV Core-core repulsion = 23014.699990 eV Total energy + Delta-G solvation = -3950.759981 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.54779 -41.76053 -40.03709 -39.49422 -37.24815 -36.05790 -34.09843 -32.87267 -31.47947 -30.67642 -29.83723 -27.82167 -27.32720 -25.73066 -24.79232 -24.25903 -23.14497 -22.10505 -21.12971 -19.88595 -19.38764 -18.81474 -18.64079 -18.19925 -17.40738 -17.12439 -16.78140 -16.67138 -16.36954 -16.12283 -15.86565 -15.53820 -14.97060 -14.62554 -14.18332 -14.12636 -13.91223 -13.75467 -13.67445 -13.54800 -13.22762 -12.85113 -12.79472 -12.66158 -12.53424 -12.45079 -12.03509 -11.95013 -11.90981 -11.87275 -11.78672 -11.66132 -11.26223 -11.02205 -10.66662 -9.94094 -9.63953 -8.87002 -7.83290 -5.18103 0.00097 0.83750 0.91168 1.45804 1.47544 1.56166 1.56364 1.81017 2.15312 2.49916 3.06291 3.29796 3.42002 3.66649 3.69882 3.75186 3.93965 3.96263 4.00235 4.11289 4.20271 4.26763 4.34306 4.40273 4.56688 4.61983 4.67003 4.72921 4.80454 4.83803 4.88327 4.94775 4.99003 5.08151 5.14374 5.20260 5.24407 5.46353 5.65008 5.74410 5.83023 6.22792 6.41258 6.56785 6.94733 7.13438 7.79295 8.43439 9.26587 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018691 B = 0.002735 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.663189 B =10236.991089 C =10613.709720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.042 3.958 3 O -0.256 6.256 4 C 0.384 3.616 5 N -0.476 5.476 6 C -0.070 4.070 7 C 0.615 3.385 8 O -0.575 6.575 9 N -0.626 5.626 10 C 0.131 3.869 11 C -0.100 4.100 12 C 0.148 3.852 13 C -0.111 4.111 14 C 0.184 3.816 15 N -0.626 5.626 16 C -0.242 4.242 17 H 0.075 0.925 18 C -0.063 4.063 19 N -0.948 5.948 20 Si 0.976 3.024 21 H -0.285 1.285 22 H -0.292 1.292 23 H -0.273 1.273 24 C 0.161 3.839 25 C 0.028 3.972 26 O -0.215 6.215 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.012 0.988 39 H 0.009 0.991 40 H 0.247 0.753 41 H 0.030 0.970 42 H 0.025 0.975 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.349 -23.810 10.451 28.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 O -0.164 6.164 4 C 0.138 3.862 5 N -0.222 5.222 6 C -0.188 4.188 7 C 0.405 3.595 8 O -0.456 6.456 9 N -0.358 5.358 10 C 0.009 3.991 11 C -0.102 4.102 12 C 0.026 3.974 13 C -0.149 4.149 14 C 0.059 3.941 15 N -0.353 5.353 16 C -0.371 4.371 17 H 0.093 0.907 18 C -0.257 4.257 19 N -0.597 5.597 20 Si 0.804 3.196 21 H -0.212 1.212 22 H -0.219 1.219 23 H -0.198 1.198 24 C 0.036 3.964 25 C -0.044 4.044 26 O -0.106 6.106 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.129 0.871 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.031 0.969 39 H 0.027 0.973 40 H 0.056 0.944 41 H 0.048 0.952 42 H 0.043 0.957 43 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -12.174 -23.361 10.365 28.309 hybrid contribution 0.950 0.016 -1.096 1.450 sum -11.224 -23.346 9.269 27.512 Atomic orbital electron populations 1.21863 0.89840 1.05049 1.03859 1.23433 0.97913 0.77781 1.04108 1.86428 1.07814 1.33263 1.88929 1.23389 0.84183 0.81418 0.97256 1.71093 1.04070 1.22510 1.24525 1.21386 0.89914 0.94293 1.13175 1.16574 0.86102 0.80709 0.76085 1.90797 1.19471 1.81194 1.54162 1.50037 1.12183 1.03296 1.70303 1.23046 0.95560 0.78983 1.01470 1.22336 0.96453 0.95513 0.95916 1.23058 0.86831 0.85312 1.02193 1.22515 1.01655 0.91955 0.98786 1.21008 0.96643 0.91554 0.84863 1.44857 1.71519 1.07401 1.11476 1.19379 1.32265 0.94960 0.90512 0.90711 1.25591 1.02498 0.96466 1.01108 1.70178 1.53444 1.04757 1.31277 0.85117 0.77692 0.77627 0.79125 1.21169 1.21870 1.19840 1.21112 0.96386 0.86483 0.92381 1.25513 0.86679 0.91935 1.00313 1.84421 1.15936 1.38622 1.71602 0.91214 0.91477 0.87052 0.89875 0.89552 0.92133 0.87006 0.86674 0.89102 0.88838 0.89542 0.96928 0.97253 0.94361 0.95209 0.95705 0.71803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.28 71.98 0.74 -0.11 16 2 C 0.04 0.38 6.38 71.98 0.46 0.84 16 3 O -0.26 -4.66 10.19 -64.22 -0.65 -5.31 16 4 C 0.38 8.37 8.98 130.43 1.17 9.54 16 5 N -0.48 -12.73 9.80 -419.38 -4.11 -16.84 16 6 C -0.07 -1.88 6.94 40.31 0.28 -1.60 16 7 C 0.62 20.14 8.04 86.64 0.70 20.83 16 8 O -0.57 -21.64 17.61 -4.10 -0.07 -21.71 16 9 N -0.63 -19.83 3.62 -867.60 -3.14 -22.97 16 10 C 0.13 4.30 8.15 85.91 0.70 5.00 16 11 C -0.10 -3.35 0.99 -52.16 -0.05 -3.40 16 12 C 0.15 4.06 7.24 85.90 0.62 4.68 16 13 C -0.11 -3.73 6.36 31.36 0.20 -3.53 16 14 C 0.18 8.96 5.39 86.80 0.47 9.43 16 15 N -0.63 -32.81 3.41 -693.33 -2.36 -35.17 16 16 C -0.24 -14.00 10.28 84.03 0.86 -13.14 16 17 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16 18 C -0.06 -3.69 5.49 84.86 0.47 -3.23 16 19 N -0.95 -57.50 10.30 21.65 0.22 -57.28 16 20 Si 0.98 46.95 29.55 68.60 2.03 48.97 16 21 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 22 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 23 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 24 C 0.16 6.86 6.63 86.28 0.57 7.43 16 25 C 0.03 0.55 11.93 67.28 0.80 1.35 16 26 O -0.22 -3.90 10.20 18.95 0.19 -3.70 16 27 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 28 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.11 0.10 8.14 -2.39 -0.02 0.09 16 30 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 2.33 8.12 -2.39 -0.02 2.31 16 33 H 0.11 3.10 8.04 -2.39 -0.02 3.08 16 34 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.09 2.57 7.51 -2.39 -0.02 2.56 16 36 H 0.09 2.65 7.99 -2.39 -0.02 2.63 16 37 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.01 0.68 7.40 -2.38 -0.02 0.66 16 39 H 0.01 0.51 7.47 -2.39 -0.02 0.49 16 40 H 0.25 14.56 8.31 -92.70 -0.77 13.79 16 41 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 42 H 0.02 1.11 8.07 -2.39 -0.02 1.09 16 43 H 0.27 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -76.51 363.00 1.11 -75.39 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: 1.02 Total: 4.51 kcal Atomic # 6 Polarization: 26.11 SS G_CDS: 7.99 Total: 34.10 kcal Atomic # 7 Polarization: -122.87 SS G_CDS: -9.39 Total: -132.25 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.53 Total: -30.73 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.97 kcal Total: -76.51 1.11 -75.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072898286.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.994 kcal (2) G-P(sol) polarization free energy of solvation -76.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds