Wall clock time and date at job start Tue Mar 31 2020 13:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00345 * 2 1 4 4 C 1.50696 * 109.47197 * 179.97438 * 3 2 1 5 5 N 1.29934 * 125.38002 * 89.99961 * 4 3 2 6 6 C 1.36065 * 108.48070 * 179.97438 * 5 4 3 7 7 C 1.47419 * 126.44859 * 179.97438 * 6 5 4 8 8 O 1.21617 * 119.99949 * 180.02562 * 7 6 5 9 9 N 1.34773 * 120.00107 * 0.02580 * 7 6 5 10 10 C 1.47891 * 134.34328 * 179.97438 * 9 7 6 11 11 C 1.52374 * 85.58994 * 156.51549 * 10 9 7 12 12 C 1.47891 * 134.34487 * 359.97438 * 9 7 6 13 13 C 1.53651 * 116.39161 * 141.36405 * 11 10 9 14 14 C 1.54598 * 102.73226 * 95.48431 * 13 11 10 15 15 N 1.47138 * 107.36861 * 20.75546 * 14 13 11 16 16 C 1.36936 * 125.58713 * 180.66437 * 15 14 13 17 17 H 1.08001 * 119.99819 * 174.12002 * 16 15 14 18 18 C 1.38809 * 119.99983 * 354.12203 * 16 15 14 19 19 N 1.31612 * 120.00299 * 6.91889 * 18 16 15 20 20 Si 1.86804 * 119.99614 * 186.92338 * 18 16 15 21 21 H 1.48500 * 109.47412 * 94.98396 * 20 18 16 22 22 H 1.48500 * 109.46717 * 214.98356 * 20 18 16 23 23 H 1.48498 * 109.47274 * 334.98144 * 20 18 16 24 24 C 1.47728 * 108.82231 * 0.92705 * 15 14 13 25 25 C 1.36087 * 107.10130 * 0.25903 * 6 5 4 26 26 O 1.34053 * 125.38013 * 269.96046 * 4 3 2 27 27 H 1.09000 * 109.46994 * 59.99956 * 1 2 3 28 28 H 1.08993 * 109.47341 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46793 * 300.00589 * 1 2 3 30 30 H 1.09003 * 109.47145 * 60.00015 * 3 2 1 31 31 H 1.09001 * 109.47028 * 300.00132 * 3 2 1 32 32 H 1.09001 * 113.85242 * 42.34987 * 10 9 7 33 33 H 1.08999 * 113.97407 * 270.69622 * 10 9 7 34 34 H 1.09004 * 113.85472 * 89.31701 * 12 9 7 35 35 H 1.09002 * 113.85317 * 317.65456 * 12 9 7 36 36 H 1.09007 * 110.75845 * 337.17636 * 13 11 10 37 37 H 1.08994 * 110.92191 * 213.86997 * 13 11 10 38 38 H 1.09003 * 109.86706 * 261.30993 * 14 13 11 39 39 H 1.09003 * 109.97789 * 140.26859 * 14 13 11 40 40 H 0.97000 * 120.00202 * 179.97438 * 19 18 16 41 41 H 1.09004 * 110.39514 * 96.33601 * 24 15 14 42 42 H 1.08998 * 110.39815 * 218.74523 * 24 15 14 43 43 H 1.08000 * 126.52472 * 179.73721 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2630 1.1267 -1.0584 6 6 5.5607 1.0245 -0.6624 7 6 6.7400 0.9306 -1.5419 8 8 7.8529 0.8426 -1.0594 9 7 6.5849 0.9422 -2.8806 10 6 7.5133 0.8686 -4.0295 11 6 6.3131 0.3556 -4.8156 12 6 5.4186 1.0338 -3.7854 13 6 6.1834 0.8505 -6.2644 14 6 6.8445 -0.2886 -7.0741 15 7 6.8322 -1.4928 -6.2287 16 6 7.3389 -2.7163 -6.5771 17 1 7.3678 -3.5154 -5.8512 18 6 7.8153 -2.9294 -7.8634 19 7 7.9071 -1.9229 -8.7064 20 14 8.3261 -4.6450 -8.3977 21 1 7.1908 -5.3067 -9.0894 22 1 9.4830 -4.5509 -9.3240 23 1 8.7107 -5.4411 -7.2046 24 6 6.1780 -1.1671 -4.9448 25 6 5.5645 1.0189 0.6985 26 8 4.2859 1.1260 1.0939 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6887 1.8464 0.8900 31 1 1.6887 1.8464 -0.8900 32 1 8.3078 0.1323 -3.9076 33 1 7.8790 1.8386 -4.3663 34 1 5.1421 2.0554 -4.0461 35 1 4.5689 0.4273 -3.4719 36 1 6.7242 1.7869 -6.4027 37 1 5.1363 0.9659 -6.5441 38 1 7.8716 -0.0198 -7.3210 39 1 6.2798 -0.4719 -7.9883 40 1 8.2403 -2.0718 -9.6051 41 1 5.1269 -1.4545 -4.9704 42 1 6.6891 -1.6652 -4.1209 43 1 6.4312 0.9452 1.3386 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073089821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:41 Heat of formation + Delta-G solvation = 22.227646 kcal Electronic energy + Delta-G solvation = -27026.983387 eV Core-core repulsion = 23077.031135 eV Total energy + Delta-G solvation = -3949.952252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.67593 -40.40364 -38.39026 -38.15902 -35.55378 -35.07109 -32.19476 -31.74464 -29.67705 -28.48542 -28.04887 -26.38319 -26.10531 -25.76532 -24.09226 -23.04271 -21.73792 -20.26973 -19.78096 -18.25161 -17.77169 -17.53261 -16.92487 -16.62045 -16.34060 -16.16760 -16.00330 -15.65654 -15.21786 -14.73544 -14.37834 -13.97065 -13.69210 -13.58928 -13.33341 -12.88580 -12.86522 -12.50211 -12.17718 -12.02024 -11.83698 -11.71395 -11.48403 -11.18148 -10.92221 -10.90716 -10.69031 -10.43765 -10.31354 -10.28876 -10.04563 -9.78042 -9.67155 -9.56921 -9.36396 -8.54102 -8.48679 -6.79131 -5.69162 -3.01086 0.86101 1.66998 2.21123 2.85133 3.19613 3.38090 3.43458 3.48971 3.50701 3.81072 4.34537 4.42862 4.51474 4.66711 4.75632 4.79690 4.87322 4.94968 5.09926 5.25208 5.26719 5.27115 5.37847 5.52361 5.53532 5.68006 5.73391 5.77431 5.84353 6.03661 6.09721 6.25144 6.28432 6.49198 6.52313 6.57859 6.74106 6.78650 7.21948 7.58811 7.65859 7.80291 7.85967 8.18243 8.28896 9.25531 9.85398 10.51759 11.42992 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015400 B = 0.002984 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.779465 B = 9379.895787 C =10083.739901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.162 3.838 4 C 0.187 3.813 5 N -0.429 5.429 6 C -0.060 4.060 7 C 0.617 3.383 8 O -0.545 6.545 9 N -0.622 5.622 10 C 0.132 3.868 11 C -0.108 4.108 12 C 0.129 3.871 13 C -0.130 4.130 14 C 0.178 3.822 15 N -0.605 5.605 16 C -0.227 4.227 17 H 0.077 0.923 18 C -0.007 4.007 19 N -0.920 5.920 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.281 1.281 24 C 0.163 3.837 25 C 0.018 3.982 26 O -0.191 6.191 27 H 0.049 0.951 28 H 0.093 0.907 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.043 0.957 39 H 0.047 0.953 40 H 0.252 0.748 41 H 0.026 0.974 42 H 0.038 0.962 43 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.031 11.294 17.679 25.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.302 6.302 3 C 0.085 3.915 4 C -0.022 4.022 5 N -0.161 5.161 6 C -0.181 4.181 7 C 0.405 3.595 8 O -0.423 6.423 9 N -0.354 5.354 10 C 0.011 3.989 11 C -0.110 4.110 12 C 0.006 3.994 13 C -0.169 4.169 14 C 0.053 3.947 15 N -0.331 5.331 16 C -0.355 4.355 17 H 0.095 0.905 18 C -0.203 4.203 19 N -0.568 5.568 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C 0.037 3.963 25 C -0.056 4.056 26 O -0.077 6.077 27 H 0.068 0.932 28 H 0.112 0.888 29 H 0.064 0.936 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.043 0.957 42 H 0.057 0.943 43 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -13.456 10.982 17.349 24.549 hybrid contribution 0.391 -0.680 0.375 0.870 sum -13.066 10.302 17.724 24.310 Atomic orbital electron populations 1.22839 0.79274 1.03718 1.00502 1.87985 1.20832 1.25781 1.95580 1.20506 0.80788 0.86613 1.03603 1.25665 0.95397 1.02503 0.78598 1.70821 1.00946 1.14853 1.29510 1.21836 0.92095 1.11258 0.92886 1.16323 0.85824 0.76873 0.80449 1.90822 1.24622 1.52349 1.74527 1.49974 1.12445 1.70135 1.02892 1.23036 0.94627 1.01002 0.80259 1.22519 0.94912 0.98764 0.94790 1.23067 0.90695 1.00597 0.85050 1.22648 1.01062 0.99804 0.93341 1.21218 0.98624 0.82859 0.91993 1.44558 1.68037 1.08203 1.12345 1.19058 1.33663 0.87454 0.95351 0.90505 1.24794 1.01612 0.97584 0.96315 1.69969 1.51885 1.28611 1.06323 0.86129 0.77661 0.83912 0.78287 1.21654 1.21809 1.20656 1.21029 0.96064 0.89213 0.90026 1.25349 0.84796 0.99713 0.95749 1.84373 1.17092 1.68505 1.37706 0.93208 0.88837 0.93556 0.90002 0.88377 0.89369 0.89610 0.89783 0.89109 0.91787 0.91649 0.93877 0.93502 0.93803 0.95671 0.94331 0.75048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.57 10.69 -35.23 -0.38 -3.95 16 3 C 0.16 1.21 6.56 36.00 0.24 1.45 16 4 C 0.19 2.09 7.93 -13.08 -0.10 1.99 16 5 N -0.43 -5.81 9.76 -7.66 -0.07 -5.89 16 6 C -0.06 -0.86 6.94 -83.02 -0.58 -1.44 16 7 C 0.62 10.47 8.04 -12.52 -0.10 10.37 16 8 O -0.54 -10.51 17.62 5.26 0.09 -10.42 16 9 N -0.62 -10.20 3.62 -188.19 -0.68 -10.88 16 10 C 0.13 2.22 8.15 -3.60 -0.03 2.19 16 11 C -0.11 -1.86 0.99 -154.85 -0.15 -2.01 16 12 C 0.13 1.87 7.24 -3.60 -0.03 1.85 16 13 C -0.13 -2.27 6.36 -25.55 -0.16 -2.43 16 14 C 0.18 4.21 5.40 -2.85 -0.02 4.19 16 15 N -0.60 -15.45 3.41 -170.49 -0.58 -16.03 16 16 C -0.23 -6.41 10.26 -15.06 -0.15 -6.56 16 17 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 18 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 19 N -0.92 -27.00 10.35 55.49 0.57 -26.43 16 20 Si 0.91 22.38 29.56 -169.99 -5.02 17.36 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 24 C 0.16 3.44 6.63 -3.16 -0.02 3.42 16 25 C 0.02 0.20 11.95 29.96 0.36 0.56 16 26 O -0.19 -2.09 10.73 6.50 0.07 -2.02 16 27 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 1.66 8.12 -51.93 -0.42 1.24 16 33 H 0.09 1.27 8.04 -51.93 -0.42 0.85 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.09 1.35 7.51 -51.93 -0.39 0.96 16 36 H 0.06 0.99 7.99 -51.93 -0.41 0.57 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.04 1.13 7.55 -51.93 -0.39 0.73 16 39 H 0.05 1.23 7.35 -51.93 -0.38 0.85 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 43 H 0.23 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 363.95 15.07 5.48 5.48 Total: -1.00 -35.00 363.95 -6.44 -41.44 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -6.19 Total: -3.22 kcal Atomic # 6 Polarization: 14.29 SS G_CDS: 0.27 Total: 14.56 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: -0.76 Total: -59.23 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.21 Total: -16.39 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.00 -6.44 -41.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073089821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.664 kcal (2) G-P(sol) polarization free energy of solvation -35.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds