Wall clock time and date at job start Tue Mar 31 2020 13:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00345 * 2 1 4 4 C 1.50696 * 109.47197 * 179.97438 * 3 2 1 5 5 N 1.29934 * 125.38002 * 89.99961 * 4 3 2 6 6 C 1.36065 * 108.48070 * 179.97438 * 5 4 3 7 7 C 1.47419 * 126.44859 * 179.97438 * 6 5 4 8 8 O 1.21617 * 119.99949 * 180.02562 * 7 6 5 9 9 N 1.34773 * 120.00107 * 0.02580 * 7 6 5 10 10 C 1.47891 * 134.34328 * 179.97438 * 9 7 6 11 11 C 1.52374 * 85.58994 * 156.51549 * 10 9 7 12 12 C 1.47891 * 134.34487 * 359.97438 * 9 7 6 13 13 C 1.53651 * 116.39161 * 141.36405 * 11 10 9 14 14 C 1.54598 * 102.73226 * 95.48431 * 13 11 10 15 15 N 1.47138 * 107.36861 * 20.75546 * 14 13 11 16 16 C 1.36936 * 125.58713 * 180.66437 * 15 14 13 17 17 H 1.08001 * 119.99819 * 174.12002 * 16 15 14 18 18 C 1.38809 * 119.99983 * 354.12203 * 16 15 14 19 19 N 1.31612 * 120.00299 * 6.91889 * 18 16 15 20 20 Si 1.86804 * 119.99614 * 186.92338 * 18 16 15 21 21 H 1.48500 * 109.47412 * 94.98396 * 20 18 16 22 22 H 1.48500 * 109.46717 * 214.98356 * 20 18 16 23 23 H 1.48498 * 109.47274 * 334.98144 * 20 18 16 24 24 C 1.47728 * 108.82231 * 0.92705 * 15 14 13 25 25 C 1.36087 * 107.10130 * 0.25903 * 6 5 4 26 26 O 1.34053 * 125.38013 * 269.96046 * 4 3 2 27 27 H 1.09000 * 109.46994 * 59.99956 * 1 2 3 28 28 H 1.08993 * 109.47341 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46793 * 300.00589 * 1 2 3 30 30 H 1.09003 * 109.47145 * 60.00015 * 3 2 1 31 31 H 1.09001 * 109.47028 * 300.00132 * 3 2 1 32 32 H 1.09001 * 113.85242 * 42.34987 * 10 9 7 33 33 H 1.08999 * 113.97407 * 270.69622 * 10 9 7 34 34 H 1.09004 * 113.85472 * 89.31701 * 12 9 7 35 35 H 1.09002 * 113.85317 * 317.65456 * 12 9 7 36 36 H 1.09007 * 110.75845 * 337.17636 * 13 11 10 37 37 H 1.08994 * 110.92191 * 213.86997 * 13 11 10 38 38 H 1.09003 * 109.86706 * 261.30993 * 14 13 11 39 39 H 1.09003 * 109.97789 * 140.26859 * 14 13 11 40 40 H 0.97000 * 120.00202 * 179.97438 * 19 18 16 41 41 H 1.09004 * 110.39514 * 96.33601 * 24 15 14 42 42 H 1.08998 * 110.39815 * 218.74523 * 24 15 14 43 43 H 1.08000 * 126.52472 * 179.73721 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 7 4.2630 1.1267 -1.0584 6 6 5.5607 1.0245 -0.6624 7 6 6.7400 0.9306 -1.5419 8 8 7.8529 0.8426 -1.0594 9 7 6.5849 0.9422 -2.8806 10 6 7.5133 0.8686 -4.0295 11 6 6.3131 0.3556 -4.8156 12 6 5.4186 1.0338 -3.7854 13 6 6.1834 0.8505 -6.2644 14 6 6.8445 -0.2886 -7.0741 15 7 6.8322 -1.4928 -6.2287 16 6 7.3389 -2.7163 -6.5771 17 1 7.3678 -3.5154 -5.8512 18 6 7.8153 -2.9294 -7.8634 19 7 7.9071 -1.9229 -8.7064 20 14 8.3261 -4.6450 -8.3977 21 1 7.1908 -5.3067 -9.0894 22 1 9.4830 -4.5509 -9.3240 23 1 8.7107 -5.4411 -7.2046 24 6 6.1780 -1.1671 -4.9448 25 6 5.5645 1.0189 0.6985 26 8 4.2859 1.1260 1.0939 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6887 1.8464 0.8900 31 1 1.6887 1.8464 -0.8900 32 1 8.3078 0.1323 -3.9076 33 1 7.8790 1.8386 -4.3663 34 1 5.1421 2.0554 -4.0461 35 1 4.5689 0.4273 -3.4719 36 1 6.7242 1.7869 -6.4027 37 1 5.1363 0.9659 -6.5441 38 1 7.8716 -0.0198 -7.3210 39 1 6.2798 -0.4719 -7.9883 40 1 8.2403 -2.0718 -9.6051 41 1 5.1269 -1.4545 -4.9704 42 1 6.6891 -1.6652 -4.1209 43 1 6.4312 0.9452 1.3386 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073089821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:40 Heat of formation + Delta-G solvation = -4.797531 kcal Electronic energy + Delta-G solvation = -27028.155287 eV Core-core repulsion = 23077.031135 eV Total energy + Delta-G solvation = -3951.124152 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.55975 -41.77764 -39.59531 -38.88885 -37.26813 -36.01404 -34.12195 -32.58202 -31.42595 -29.98779 -28.78211 -27.82273 -27.35392 -26.62792 -25.68674 -24.30845 -22.59001 -22.11908 -20.93959 -19.70669 -18.91028 -18.73684 -18.26223 -17.72103 -17.21256 -17.03729 -16.79115 -16.61969 -16.52457 -16.48651 -15.97379 -15.55459 -15.00378 -14.90233 -14.20215 -14.15411 -13.88373 -13.76251 -13.68773 -13.27476 -13.25458 -12.87278 -12.82671 -12.60926 -12.49333 -12.29208 -12.03625 -11.98153 -11.96813 -11.91085 -11.66178 -11.29140 -11.04363 -10.76940 -10.66522 -10.31212 -9.76408 -8.87955 -7.86170 -5.19982 -0.04652 0.72470 1.40006 1.45108 1.46526 1.55493 1.67489 2.10318 2.48520 2.53358 3.12933 3.27393 3.36187 3.41323 3.64449 3.69182 3.76048 4.09007 4.12665 4.18141 4.23986 4.34409 4.41589 4.54435 4.55189 4.58228 4.62719 4.64833 4.67511 4.74315 4.81468 4.94264 4.96180 4.98690 5.06570 5.12284 5.22477 5.45508 5.73201 5.80705 6.04885 6.21240 6.31472 6.54428 6.91657 7.11788 7.77493 8.42055 9.24155 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015400 B = 0.002984 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.779465 B = 9379.895787 C =10083.739901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.418 6.418 3 C 0.160 3.840 4 C 0.192 3.808 5 N -0.452 5.452 6 C -0.095 4.095 7 C 0.613 3.387 8 O -0.580 6.580 9 N -0.627 5.627 10 C 0.130 3.870 11 C -0.101 4.101 12 C 0.149 3.851 13 C -0.109 4.109 14 C 0.183 3.817 15 N -0.626 5.626 16 C -0.246 4.246 17 H 0.073 0.927 18 C -0.060 4.060 19 N -0.945 5.945 20 Si 0.974 3.026 21 H -0.285 1.285 22 H -0.292 1.292 23 H -0.273 1.273 24 C 0.162 3.838 25 C 0.040 3.960 26 O -0.187 6.187 27 H 0.060 0.940 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.057 0.943 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.009 0.991 39 H 0.013 0.987 40 H 0.248 0.752 41 H 0.031 0.969 42 H 0.021 0.979 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.010 12.608 19.167 27.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.337 6.337 3 C 0.083 3.917 4 C -0.018 4.018 5 N -0.184 5.184 6 C -0.214 4.214 7 C 0.403 3.597 8 O -0.461 6.461 9 N -0.359 5.359 10 C 0.008 3.992 11 C -0.102 4.102 12 C 0.027 3.973 13 C -0.148 4.148 14 C 0.058 3.942 15 N -0.352 5.352 16 C -0.375 4.375 17 H 0.091 0.909 18 C -0.253 4.253 19 N -0.593 5.593 20 Si 0.803 3.197 21 H -0.212 1.212 22 H -0.219 1.219 23 H -0.198 1.198 24 C 0.037 3.963 25 C -0.034 4.034 26 O -0.072 6.072 27 H 0.079 0.921 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.132 0.868 31 H 0.133 0.867 32 H 0.076 0.924 33 H 0.131 0.869 34 H 0.136 0.864 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.027 0.973 39 H 0.031 0.969 40 H 0.057 0.943 41 H 0.048 0.952 42 H 0.039 0.961 43 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -15.475 12.305 18.847 27.314 hybrid contribution 0.957 -1.130 -0.022 1.481 sum -14.517 11.176 18.825 26.268 Atomic orbital electron populations 1.23019 0.77403 1.04289 1.02040 1.87920 1.22920 1.26935 1.95920 1.20857 0.78364 0.86424 1.06027 1.26476 0.96712 1.00596 0.77989 1.70752 1.00722 1.16193 1.30697 1.21585 0.91815 1.14464 0.93583 1.16675 0.86292 0.76068 0.80664 1.90787 1.26142 1.54053 1.75115 1.50031 1.12855 1.70010 1.02986 1.23054 0.93828 1.01521 0.80767 1.22339 0.96526 0.95905 0.95474 1.23068 0.89522 1.01979 0.82723 1.22506 1.02145 0.98304 0.91800 1.21029 0.96775 0.84472 0.91901 1.44847 1.68120 1.08082 1.14199 1.19368 1.33737 0.88748 0.95636 0.90893 1.25589 1.02157 1.01182 0.96407 1.70173 1.52647 1.30246 1.06255 0.85123 0.77108 0.79668 0.77820 1.21177 1.21879 1.19793 1.21104 0.95409 0.92226 0.87594 1.25836 0.85581 0.96921 0.95102 1.84422 1.16887 1.68251 1.37687 0.92115 0.88865 0.91542 0.86792 0.86676 0.92401 0.86920 0.86357 0.89127 0.88781 0.89364 0.97313 0.96877 0.94276 0.95162 0.96076 0.72460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.47 16 2 O -0.42 -6.85 10.69 -148.98 -1.59 -8.45 16 3 C 0.16 1.91 6.56 71.23 0.47 2.37 16 4 C 0.19 3.83 7.93 88.39 0.70 4.53 16 5 N -0.45 -11.40 9.76 -293.04 -2.86 -14.26 16 6 C -0.10 -2.60 6.94 40.41 0.28 -2.32 16 7 C 0.61 20.51 8.04 86.66 0.70 21.21 16 8 O -0.58 -22.53 17.62 -4.09 -0.07 -22.60 16 9 N -0.63 -19.91 3.62 -867.54 -3.14 -23.05 16 10 C 0.13 4.28 8.15 85.90 0.70 4.98 16 11 C -0.10 -3.34 0.99 -52.16 -0.05 -3.39 16 12 C 0.15 3.97 7.24 85.90 0.62 4.59 16 13 C -0.11 -3.61 6.36 31.36 0.20 -3.42 16 14 C 0.18 8.85 5.40 86.80 0.47 9.32 16 15 N -0.63 -32.87 3.41 -693.31 -2.36 -35.23 16 16 C -0.25 -14.29 10.26 84.03 0.86 -13.43 16 17 H 0.07 4.16 7.84 -2.91 -0.02 4.14 16 18 C -0.06 -3.48 5.48 84.86 0.47 -3.01 16 19 N -0.94 -57.14 10.35 21.65 0.22 -56.92 16 20 Si 0.97 46.92 29.56 68.60 2.03 48.94 16 21 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 22 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 23 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 24 C 0.16 6.91 6.63 86.28 0.57 7.49 16 25 C 0.04 0.83 11.95 67.32 0.80 1.64 16 26 O -0.19 -3.64 10.73 0.33 0.00 -3.64 16 27 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 2.25 8.12 -2.39 -0.02 2.24 16 33 H 0.11 3.12 8.04 -2.39 -0.02 3.10 16 34 H 0.12 2.45 8.14 -2.38 -0.02 2.43 16 35 H 0.09 2.49 7.51 -2.39 -0.02 2.47 16 36 H 0.09 2.61 7.99 -2.38 -0.02 2.59 16 37 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.01 0.47 7.55 -2.39 -0.02 0.45 16 39 H 0.01 0.71 7.35 -2.39 -0.02 0.69 16 40 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 41 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.02 0.96 8.07 -2.39 -0.02 0.94 16 43 H 0.26 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -79.39 363.95 1.29 -78.10 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: 1.02 Total: 5.06 kcal Atomic # 6 Polarization: 24.01 SS G_CDS: 8.04 Total: 32.04 kcal Atomic # 7 Polarization: -121.32 SS G_CDS: -8.14 Total: -129.46 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -1.66 Total: -34.69 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.94 kcal Total: -79.39 1.29 -78.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073089821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.305 kcal (2) G-P(sol) polarization free energy of solvation -79.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds