Wall clock time and date at job start Tue Mar 31 2020 13:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99842 * 2 1 4 4 C 1.50706 * 109.46748 * 179.97438 * 3 2 1 5 5 N 1.30011 * 127.33618 * 269.99796 * 4 3 2 6 6 O 1.20654 * 112.30179 * 180.02562 * 5 4 3 7 7 C 1.33499 * 113.15630 * 359.75594 * 6 5 4 8 8 C 1.37360 * 106.34051 * 0.38959 * 7 6 5 9 9 C 1.47392 * 128.56366 * 179.91511 * 8 7 6 10 10 O 1.21601 * 120.00489 * 179.67519 * 9 8 7 11 11 N 1.34787 * 119.99834 * 359.67307 * 9 8 7 12 12 C 1.47890 * 134.33938 * 180.02562 * 11 9 8 13 13 C 1.52375 * 85.58710 * 156.51305 * 12 11 9 14 14 C 1.47891 * 134.34304 * 0.02562 * 11 9 8 15 15 C 1.53654 * 116.38842 * 141.35649 * 13 12 11 16 16 C 1.54609 * 102.72895 * 95.48499 * 15 13 12 17 17 N 1.47130 * 107.36734 * 20.75555 * 16 15 13 18 18 C 1.36932 * 125.59179 * 180.93239 * 17 16 15 19 19 H 1.07997 * 120.00597 * 185.89238 * 18 17 16 20 20 C 1.38815 * 119.99516 * 5.88157 * 18 17 16 21 21 N 1.31622 * 120.00198 * 7.35497 * 20 18 17 22 22 Si 1.86807 * 119.99795 * 187.07179 * 20 18 17 23 23 H 1.48492 * 109.47246 * 265.29506 * 22 20 18 24 24 H 1.48503 * 109.46936 * 25.29435 * 22 20 18 25 25 H 1.48497 * 109.46780 * 145.28985 * 22 20 18 26 26 C 1.47727 * 108.82554 * 1.18962 * 17 16 15 27 27 H 1.09001 * 109.47510 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47462 * 300.00269 * 1 2 3 29 29 H 1.09001 * 109.46735 * 60.00520 * 1 2 3 30 30 H 1.09000 * 109.47494 * 59.99788 * 3 2 1 31 31 H 1.08994 * 109.46932 * 299.99058 * 3 2 1 32 32 H 1.08001 * 126.82728 * 180.30591 * 7 6 5 33 33 H 1.08997 * 113.85511 * 42.34332 * 12 11 9 34 34 H 1.08998 * 113.96738 * 270.69541 * 12 11 9 35 35 H 1.08992 * 113.85132 * 89.31922 * 14 11 9 36 36 H 1.08997 * 113.84944 * 317.65338 * 14 11 9 37 37 H 1.09008 * 110.75718 * 337.17860 * 15 13 12 38 38 H 1.08993 * 110.92061 * 213.87005 * 15 13 12 39 39 H 1.09005 * 109.86542 * 261.30935 * 16 15 13 40 40 H 1.09001 * 109.97505 * 140.26834 * 16 15 13 41 41 H 0.97001 * 119.99956 * 179.71985 * 21 20 18 42 42 H 1.09003 * 110.40101 * 96.07132 * 26 17 16 43 43 H 1.08995 * 110.40610 * 218.48669 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2982 1.1244 1.0347 6 8 5.4599 1.0327 0.7222 7 6 5.6481 1.0128 -0.5993 8 6 4.4024 1.1163 -1.1687 9 6 4.0449 1.1439 -2.5983 10 8 2.8792 1.2352 -2.9321 11 7 5.0103 1.0679 -3.5359 12 6 5.0171 1.0674 -5.0148 13 6 6.4531 1.5617 -4.8911 14 6 6.4841 0.9520 -3.4951 15 6 7.4595 0.9971 -5.9056 16 6 7.4785 2.0822 -7.0068 17 7 6.9757 3.3272 -6.4052 18 6 6.8198 4.5211 -7.0573 19 1 6.5328 5.4042 -6.5059 20 6 7.0308 4.5963 -8.4272 21 7 7.2380 3.4981 -9.1225 22 14 7.0127 6.2556 -9.2853 23 1 5.6566 6.5157 -9.8314 24 1 7.3670 7.3199 -8.3122 25 1 8.0004 6.2501 -10.3942 26 6 6.6725 3.0798 -4.9807 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.6885 1.8465 0.8899 31 1 1.6887 1.8463 -0.8900 32 1 6.5922 0.9326 -1.1176 33 1 4.3373 1.7944 -5.4590 34 1 4.9290 0.0753 -5.4576 35 1 6.8448 -0.0763 -3.4710 36 1 6.9557 1.5885 -2.7464 37 1 7.1109 0.0454 -6.3069 38 1 8.4458 0.8865 -5.4551 39 1 6.8332 1.7830 -7.8328 40 1 8.4967 2.2295 -7.3669 41 1 7.3814 3.5504 -10.0805 42 1 7.5124 3.3825 -4.3553 43 1 5.7677 3.6117 -4.6868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073120963.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:08 Heat of formation + Delta-G solvation = 60.237692 kcal Electronic energy + Delta-G solvation = -27249.832333 eV Core-core repulsion = 23301.528320 eV Total energy + Delta-G solvation = -3948.304013 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.18397 -40.63104 -38.42490 -37.95248 -35.68605 -34.19231 -32.67254 -32.04506 -29.77016 -28.75036 -28.28125 -26.57845 -26.06975 -25.87237 -24.47477 -23.30266 -21.51347 -20.40455 -19.90102 -18.56381 -18.03242 -17.77611 -17.12761 -16.75548 -16.50223 -16.11002 -15.86786 -15.43377 -15.26785 -14.82069 -14.54848 -14.19559 -13.70330 -13.66449 -13.15420 -12.82144 -12.65291 -12.57355 -12.35357 -11.94762 -11.83883 -11.79290 -11.67446 -11.14513 -10.96560 -10.79839 -10.52990 -10.43526 -10.40430 -10.14070 -9.98122 -9.97546 -9.91852 -9.71788 -9.69455 -8.67667 -8.66218 -6.88448 -5.74763 -3.11232 0.86617 1.40133 2.51719 2.87781 3.13666 3.37761 3.43669 3.44714 3.45193 3.89051 4.14974 4.38286 4.40736 4.57106 4.63031 4.87348 4.93881 4.95904 5.10505 5.13275 5.19409 5.26261 5.32619 5.43274 5.44915 5.46495 5.54405 5.58438 5.63483 5.83615 5.96067 6.07425 6.14459 6.39538 6.41449 6.58317 6.62286 6.81425 7.41424 7.59408 7.64771 7.77459 7.89048 8.09907 8.21438 9.16119 9.76635 10.41221 11.34472 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019655 B = 0.002878 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.196934 B = 9728.154825 C =10137.506850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.383 6.383 3 C 0.142 3.858 4 C 0.063 3.937 5 N -0.340 5.340 6 O 0.104 5.896 7 C -0.013 4.013 8 C -0.226 4.226 9 C 0.612 3.388 10 O -0.530 6.530 11 N -0.634 5.634 12 C 0.136 3.864 13 C -0.102 4.102 14 C 0.103 3.897 15 C -0.130 4.130 16 C 0.171 3.829 17 N -0.602 5.602 18 C -0.230 4.230 19 H 0.077 0.923 20 C -0.006 4.006 21 N -0.919 5.919 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.281 1.281 25 H -0.290 1.290 26 C 0.161 3.839 27 H 0.088 0.912 28 H 0.042 0.958 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.229 0.771 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.030 0.970 41 H 0.252 0.748 42 H 0.026 0.974 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.899 -8.554 16.888 19.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.301 6.301 3 C 0.065 3.935 4 C -0.100 4.100 5 N -0.045 5.045 6 O 0.041 5.959 7 C -0.094 4.094 8 C -0.234 4.234 9 C 0.401 3.599 10 O -0.408 6.408 11 N -0.369 5.369 12 C 0.015 3.985 13 C -0.104 4.104 14 C -0.020 4.020 15 C -0.169 4.169 16 C 0.046 3.954 17 N -0.329 5.329 18 C -0.358 4.358 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.566 5.566 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.207 1.207 25 H -0.216 1.216 26 C 0.034 3.966 27 H 0.107 0.893 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.245 0.755 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.048 0.952 41 H 0.063 0.937 42 H 0.043 0.957 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.772 -8.553 17.940 20.440 hybrid contribution -0.076 0.997 -1.350 1.679 sum -4.848 -7.556 16.591 18.864 Atomic orbital electron populations 1.22766 0.80064 1.03074 1.00333 1.87899 1.20320 1.26355 1.95538 1.20567 0.84148 0.86131 1.02622 1.24345 0.97417 1.01467 0.86749 1.73655 0.89560 1.17742 1.23544 1.84585 1.21555 1.66367 1.23392 1.26742 1.00614 0.98460 0.83593 1.22327 0.92672 1.12848 0.95520 1.16387 0.84326 0.76840 0.82303 1.90789 1.17817 1.50624 1.81532 1.50049 1.07052 1.71907 1.07899 1.22994 0.96384 1.01468 0.77673 1.22506 0.95225 0.99126 0.93519 1.23314 0.79392 1.01115 0.98211 1.22650 0.97226 0.99713 0.97267 1.21304 0.98737 0.83056 0.92277 1.44535 1.75797 1.08438 1.04116 1.19025 1.40808 0.85672 0.90282 0.90526 1.24795 1.02100 0.97278 0.96098 1.69940 1.55083 1.25207 1.06377 0.86124 0.77395 0.83122 0.79266 1.21612 1.20654 1.21628 1.21118 0.97617 0.89404 0.88414 0.89329 0.93952 0.93352 0.91364 0.89229 0.75480 0.89182 0.89494 0.88919 0.89936 0.91582 0.91679 0.91741 0.95156 0.93737 0.95683 0.94095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.43 16 2 O -0.38 -5.10 10.69 -35.23 -0.38 -5.47 16 3 C 0.14 1.78 6.19 36.01 0.22 2.00 16 4 C 0.06 0.86 7.21 -79.76 -0.58 0.28 16 5 N -0.34 -4.43 12.01 34.78 0.42 -4.01 16 6 O 0.10 1.14 11.06 18.64 0.21 1.35 16 7 C -0.01 -0.12 11.42 30.41 0.35 0.23 16 8 C -0.23 -2.97 6.46 -102.90 -0.66 -3.63 16 9 C 0.61 9.48 8.04 -12.53 -0.10 9.38 16 10 O -0.53 -9.94 16.42 5.28 0.09 -9.85 16 11 N -0.63 -8.75 3.62 -188.21 -0.68 -9.44 16 12 C 0.14 2.04 8.16 -3.60 -0.03 2.01 16 13 C -0.10 -1.50 0.99 -154.72 -0.15 -1.65 16 14 C 0.10 1.08 6.62 -3.60 -0.02 1.06 16 15 C -0.13 -2.01 6.36 -25.55 -0.16 -2.17 16 16 C 0.17 3.78 5.47 -2.85 -0.02 3.76 16 17 N -0.60 -14.38 3.41 -170.35 -0.58 -14.96 16 18 C -0.23 -6.17 10.26 -15.06 -0.15 -6.33 16 19 H 0.08 2.01 7.84 -52.49 -0.41 1.60 16 20 C -0.01 -0.17 5.45 -17.43 -0.09 -0.26 16 21 N -0.92 -26.04 10.45 55.49 0.58 -25.46 16 22 Si 0.91 21.65 29.56 -169.99 -5.02 16.63 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 C 0.16 3.01 6.65 -3.04 -0.02 2.99 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 1.17 7.11 -51.93 -0.37 0.80 16 32 H 0.23 1.28 5.50 -52.49 -0.29 0.99 16 33 H 0.09 1.59 8.13 -51.93 -0.42 1.16 16 34 H 0.09 1.17 8.04 -51.93 -0.42 0.75 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.69 6.46 -51.93 -0.34 0.35 16 37 H 0.07 0.91 7.99 -51.92 -0.41 0.49 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 1.62 6.88 -51.93 -0.36 1.26 16 40 H 0.03 0.74 7.97 -51.93 -0.41 0.33 16 41 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.04 0.81 8.08 -51.93 -0.42 0.39 16 LS Contribution 358.10 15.07 5.40 5.40 Total: -1.00 -33.66 358.10 -6.23 -39.89 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -5.94 Total: -3.16 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: -0.31 Total: 9.09 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: -0.26 Total: -53.86 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.08 Total: -13.98 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.66 -6.23 -39.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073120963.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.125 kcal (2) G-P(sol) polarization free energy of solvation -33.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds