Wall clock time and date at job start Tue Mar 31 2020 13:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99842 * 2 1 4 4 C 1.50706 * 109.46748 * 179.97438 * 3 2 1 5 5 N 1.30011 * 127.33618 * 269.99796 * 4 3 2 6 6 O 1.20654 * 112.30179 * 180.02562 * 5 4 3 7 7 C 1.33499 * 113.15630 * 359.75594 * 6 5 4 8 8 C 1.37360 * 106.34051 * 0.38959 * 7 6 5 9 9 C 1.47392 * 128.56366 * 179.91511 * 8 7 6 10 10 O 1.21601 * 120.00489 * 179.67519 * 9 8 7 11 11 N 1.34787 * 119.99834 * 359.67307 * 9 8 7 12 12 C 1.47890 * 134.33938 * 180.02562 * 11 9 8 13 13 C 1.52375 * 85.58710 * 156.51305 * 12 11 9 14 14 C 1.47891 * 134.34304 * 0.02562 * 11 9 8 15 15 C 1.53654 * 116.38842 * 141.35649 * 13 12 11 16 16 C 1.54609 * 102.72895 * 95.48499 * 15 13 12 17 17 N 1.47130 * 107.36734 * 20.75555 * 16 15 13 18 18 C 1.36932 * 125.59179 * 180.93239 * 17 16 15 19 19 H 1.07997 * 120.00597 * 185.89238 * 18 17 16 20 20 C 1.38815 * 119.99516 * 5.88157 * 18 17 16 21 21 N 1.31622 * 120.00198 * 7.35497 * 20 18 17 22 22 Si 1.86807 * 119.99795 * 187.07179 * 20 18 17 23 23 H 1.48492 * 109.47246 * 265.29506 * 22 20 18 24 24 H 1.48503 * 109.46936 * 25.29435 * 22 20 18 25 25 H 1.48497 * 109.46780 * 145.28985 * 22 20 18 26 26 C 1.47727 * 108.82554 * 1.18962 * 17 16 15 27 27 H 1.09001 * 109.47510 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47462 * 300.00269 * 1 2 3 29 29 H 1.09001 * 109.46735 * 60.00520 * 1 2 3 30 30 H 1.09000 * 109.47494 * 59.99788 * 3 2 1 31 31 H 1.08994 * 109.46932 * 299.99058 * 3 2 1 32 32 H 1.08001 * 126.82728 * 180.30591 * 7 6 5 33 33 H 1.08997 * 113.85511 * 42.34332 * 12 11 9 34 34 H 1.08998 * 113.96738 * 270.69541 * 12 11 9 35 35 H 1.08992 * 113.85132 * 89.31922 * 14 11 9 36 36 H 1.08997 * 113.84944 * 317.65338 * 14 11 9 37 37 H 1.09008 * 110.75718 * 337.17860 * 15 13 12 38 38 H 1.08993 * 110.92061 * 213.87005 * 15 13 12 39 39 H 1.09005 * 109.86542 * 261.30935 * 16 15 13 40 40 H 1.09001 * 109.97505 * 140.26834 * 16 15 13 41 41 H 0.97001 * 119.99956 * 179.71985 * 21 20 18 42 42 H 1.09003 * 110.40101 * 96.07132 * 26 17 16 43 43 H 1.08995 * 110.40610 * 218.48669 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2982 1.1244 1.0347 6 8 5.4599 1.0327 0.7222 7 6 5.6481 1.0128 -0.5993 8 6 4.4024 1.1163 -1.1687 9 6 4.0449 1.1439 -2.5983 10 8 2.8792 1.2352 -2.9321 11 7 5.0103 1.0679 -3.5359 12 6 5.0171 1.0674 -5.0148 13 6 6.4531 1.5617 -4.8911 14 6 6.4841 0.9520 -3.4951 15 6 7.4595 0.9971 -5.9056 16 6 7.4785 2.0822 -7.0068 17 7 6.9757 3.3272 -6.4052 18 6 6.8198 4.5211 -7.0573 19 1 6.5328 5.4042 -6.5059 20 6 7.0308 4.5963 -8.4272 21 7 7.2380 3.4981 -9.1225 22 14 7.0127 6.2556 -9.2853 23 1 5.6566 6.5157 -9.8314 24 1 7.3670 7.3199 -8.3122 25 1 8.0004 6.2501 -10.3942 26 6 6.6725 3.0798 -4.9807 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.6885 1.8465 0.8899 31 1 1.6887 1.8463 -0.8900 32 1 6.5922 0.9326 -1.1176 33 1 4.3373 1.7944 -5.4590 34 1 4.9290 0.0753 -5.4576 35 1 6.8448 -0.0763 -3.4710 36 1 6.9557 1.5885 -2.7464 37 1 7.1109 0.0454 -6.3069 38 1 8.4458 0.8865 -5.4551 39 1 6.8332 1.7830 -7.8328 40 1 8.4967 2.2295 -7.3669 41 1 7.3814 3.5504 -10.0805 42 1 7.5124 3.3825 -4.3553 43 1 5.7677 3.6117 -4.6868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073120963.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:08 Heat of formation + Delta-G solvation = 35.928087 kcal Electronic energy + Delta-G solvation = -27250.886476 eV Core-core repulsion = 23301.528320 eV Total energy + Delta-G solvation = -3949.358156 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -46.10335 -41.79900 -39.60211 -38.93457 -37.23702 -35.12608 -34.18855 -33.31237 -31.35434 -29.99403 -29.32097 -27.80220 -27.39766 -26.76234 -25.87117 -24.60038 -22.41024 -22.10499 -20.98775 -19.78891 -18.95414 -18.79251 -18.74106 -17.92984 -17.38191 -17.21810 -16.81407 -16.73157 -16.55902 -16.27389 -15.87192 -15.62131 -15.07298 -14.83678 -14.26768 -14.12879 -13.74096 -13.67305 -13.59700 -13.41176 -13.19018 -12.86545 -12.75685 -12.59998 -12.57018 -12.38713 -12.03662 -11.92128 -11.84004 -11.67614 -11.33111 -11.22089 -11.05730 -10.88495 -10.78002 -10.67339 -9.77243 -8.83903 -7.81367 -5.18452 0.00816 0.46102 1.46270 1.46620 1.51932 1.55827 2.01126 2.09953 2.50115 2.57347 2.99955 3.26190 3.29426 3.41239 3.47734 3.67840 3.73694 3.82913 4.05495 4.11499 4.18753 4.21539 4.33279 4.43964 4.47220 4.51676 4.58393 4.62104 4.68205 4.76725 4.77305 4.82505 4.86943 5.01452 5.10833 5.18754 5.27932 5.48156 5.71539 5.88747 5.97802 6.26443 6.58530 6.95042 7.06659 7.13965 7.81700 8.44016 9.25486 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019655 B = 0.002878 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.196934 B = 9728.154825 C =10137.506850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.409 6.409 3 C 0.142 3.858 4 C 0.043 3.957 5 N -0.353 5.353 6 O 0.115 5.885 7 C 0.030 3.970 8 C -0.258 4.258 9 C 0.609 3.391 10 O -0.579 6.579 11 N -0.634 5.634 12 C 0.128 3.872 13 C -0.095 4.095 14 C 0.119 3.881 15 C -0.108 4.108 16 C 0.173 3.827 17 N -0.626 5.626 18 C -0.240 4.240 19 H 0.075 0.925 20 C -0.063 4.063 21 N -0.945 5.945 22 Si 0.970 3.030 23 H -0.291 1.291 24 H -0.270 1.270 25 H -0.292 1.292 26 C 0.157 3.843 27 H 0.102 0.898 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.275 0.725 33 H 0.049 0.951 34 H 0.107 0.893 35 H 0.139 0.861 36 H 0.117 0.883 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.023 0.977 40 H -0.004 1.004 41 H 0.246 0.754 42 H 0.046 0.954 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.112 -9.706 19.308 21.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.327 6.327 3 C 0.065 3.935 4 C -0.120 4.120 5 N -0.058 5.058 6 O 0.051 5.949 7 C -0.051 4.051 8 C -0.266 4.266 9 C 0.400 3.600 10 O -0.461 6.461 11 N -0.367 5.367 12 C 0.007 3.993 13 C -0.097 4.097 14 C -0.002 4.002 15 C -0.147 4.147 16 C 0.048 3.952 17 N -0.352 5.352 18 C -0.370 4.370 19 H 0.093 0.907 20 C -0.256 4.256 21 N -0.594 5.594 22 Si 0.799 3.201 23 H -0.218 1.218 24 H -0.195 1.195 25 H -0.219 1.219 26 C 0.032 3.968 27 H 0.121 0.879 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.291 0.709 33 H 0.068 0.932 34 H 0.125 0.875 35 H 0.157 0.843 36 H 0.135 0.865 37 H 0.108 0.892 38 H 0.115 0.885 39 H 0.041 0.959 40 H 0.015 0.985 41 H 0.055 0.945 42 H 0.064 0.936 43 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -2.967 -9.707 20.413 22.797 hybrid contribution -0.635 1.386 -2.096 2.592 sum -3.602 -8.321 18.316 20.438 Atomic orbital electron populations 1.22972 0.78367 1.04303 1.01136 1.87849 1.22322 1.26887 1.95683 1.20564 0.84256 0.86006 1.02668 1.24589 0.98022 1.02028 0.87326 1.73656 0.90155 1.18346 1.23616 1.84574 1.20662 1.65579 1.24066 1.27422 1.00730 0.94369 0.82614 1.22129 0.94274 1.16063 0.94130 1.16692 0.83887 0.76078 0.83358 1.90760 1.19924 1.52976 1.82407 1.50061 1.08583 1.71168 1.06911 1.23006 0.95921 1.01534 0.78879 1.22304 0.94604 0.96149 0.96637 1.23610 0.77098 1.03957 0.95519 1.22497 0.99263 0.97956 0.94949 1.21122 0.95525 0.84641 0.93885 1.44836 1.75880 1.08118 1.06394 1.19355 1.39674 0.87151 0.90786 0.90726 1.25549 1.02830 1.00307 0.96932 1.70158 1.56443 1.26776 1.05995 0.85186 0.76904 0.79872 0.78136 1.21818 1.19511 1.21882 1.21291 0.97260 0.92483 0.85785 0.87937 0.91987 0.93692 0.89646 0.90751 0.70941 0.93204 0.87465 0.84335 0.86542 0.89218 0.88510 0.95890 0.98550 0.94479 0.93598 0.95995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.75 16 2 O -0.41 -10.88 10.69 -148.98 -1.59 -12.47 16 3 C 0.14 3.58 6.19 71.24 0.44 4.02 16 4 C 0.04 1.11 7.21 45.16 0.33 1.44 16 5 N -0.35 -8.46 12.01 -44.78 -0.54 -9.00 16 6 O 0.11 2.08 11.06 76.94 0.85 2.93 16 7 C 0.03 0.43 11.42 67.61 0.77 1.21 16 8 C -0.26 -6.19 6.46 -18.75 -0.12 -6.31 16 9 C 0.61 18.16 8.04 86.65 0.70 18.86 16 10 O -0.58 -22.35 16.42 -4.03 -0.07 -22.41 16 11 N -0.63 -15.81 3.62 -867.62 -3.14 -18.95 16 12 C 0.13 3.71 8.16 85.91 0.70 4.41 16 13 C -0.10 -2.51 0.99 -52.07 -0.05 -2.56 16 14 C 0.12 1.81 6.62 85.90 0.57 2.38 16 15 C -0.11 -3.00 6.36 31.36 0.20 -2.80 16 16 C 0.17 7.73 5.47 86.81 0.47 8.21 16 17 N -0.63 -30.23 3.41 -692.87 -2.36 -32.59 16 18 C -0.24 -13.22 10.26 84.04 0.86 -12.36 16 19 H 0.07 4.00 7.84 -2.91 -0.02 3.98 16 20 C -0.06 -3.52 5.45 84.86 0.46 -3.06 16 21 N -0.94 -55.60 10.45 21.65 0.23 -55.38 16 22 Si 0.97 45.54 29.56 68.60 2.03 47.56 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 26 C 0.16 5.66 6.65 86.36 0.57 6.23 16 27 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.04 0.82 8.14 -2.39 -0.02 0.81 16 30 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.07 2.05 7.11 -2.39 -0.02 2.03 16 32 H 0.28 1.00 5.50 -2.91 -0.02 0.98 16 33 H 0.05 1.83 8.13 -2.39 -0.02 1.81 16 34 H 0.11 2.66 8.04 -2.39 -0.02 2.64 16 35 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.12 1.06 6.46 -2.39 -0.02 1.04 16 37 H 0.09 2.12 7.99 -2.38 -0.02 2.10 16 38 H 0.10 2.14 8.14 -2.39 -0.02 2.13 16 39 H 0.02 1.20 6.88 -2.38 -0.02 1.18 16 40 H 0.00 -0.19 7.97 -2.39 -0.02 -0.21 16 41 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 42 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.02 0.86 8.08 -2.39 -0.02 0.84 16 Total: -1.00 -80.48 358.10 3.59 -76.88 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: 1.03 Total: 2.01 kcal Atomic # 6 Polarization: 14.26 SS G_CDS: 7.15 Total: 21.41 kcal Atomic # 7 Polarization: -110.11 SS G_CDS: -5.81 Total: -115.92 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -0.81 Total: -31.94 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -80.48 3.59 -76.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073120963.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.811 kcal (2) G-P(sol) polarization free energy of solvation -80.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds