Wall clock time and date at job start Tue Mar 31 2020 13:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 O 1.20925 * 124.56511 * 2 1 4 4 C 1.34167 * 112.19408 * 180.02562 * 3 2 1 5 5 C 1.48202 * 126.38671 * 179.97438 * 4 3 2 6 6 O 1.21495 * 119.99713 * 180.02562 * 5 4 3 7 7 N 1.34776 * 120.00139 * 0.02901 * 5 4 3 8 8 C 1.46497 * 120.00198 * 179.97438 * 7 5 4 9 9 H 1.09000 * 112.94972 * 26.90123 * 8 7 5 10 10 C 1.53952 * 113.66105 * 255.49637 * 8 7 5 11 11 C 1.53950 * 87.37851 * 270.21915 * 10 8 7 12 12 H 1.09006 * 113.66206 * 89.78396 * 11 10 8 13 13 N 1.46500 * 113.66037 * 220.83072 * 11 10 8 14 14 C 1.36936 * 120.00465 * 255.49663 * 13 11 10 15 15 H 1.08000 * 119.99881 * 0.02562 * 14 13 11 16 16 C 1.38807 * 120.00046 * 180.02562 * 14 13 11 17 17 N 1.31621 * 120.00482 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 120.00009 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47117 * 59.99348 * 18 16 14 20 20 H 1.48495 * 109.47312 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46847 * 299.99518 * 18 16 14 22 22 C 1.52909 * 113.66062 * 158.31111 * 8 7 5 23 23 C 1.52907 * 121.13536 * 323.85110 * 22 8 7 24 24 C 1.53958 * 86.78205 * 209.38733 * 23 22 8 25 25 C 1.52915 * 121.13447 * 215.29263 * 22 8 7 26 26 C 1.36324 * 107.22750 * 0.23372 * 4 3 2 27 27 C 1.34825 * 124.56994 * 180.02562 * 2 1 3 28 28 O 1.21976 * 127.14783 * 359.95146 * 27 2 1 29 29 H 1.09000 * 109.47429 * 359.97223 * 1 2 3 30 30 H 1.09002 * 109.46553 * 119.97232 * 1 2 3 31 31 H 1.08996 * 109.47007 * 239.96895 * 1 2 3 32 32 H 0.97008 * 119.99530 * 0.02562 * 7 5 4 33 33 H 1.09002 * 113.58142 * 24.86467 * 10 8 7 34 34 H 1.09004 * 113.57653 * 155.58067 * 10 8 7 35 35 H 0.96999 * 120.00029 * 75.50463 * 13 11 10 36 36 H 0.96993 * 120.00234 * 180.02562 * 17 16 14 37 37 H 1.08994 * 113.66316 * 323.85618 * 23 22 8 38 38 H 1.08997 * 113.66044 * 94.91866 * 23 22 8 39 39 H 1.09000 * 113.57861 * 270.13288 * 24 23 22 40 40 H 1.08990 * 113.65166 * 139.34938 * 24 23 22 41 41 H 1.09004 * 113.66330 * 265.09006 * 25 22 8 42 42 H 1.09001 * 113.65876 * 36.13855 * 25 22 8 43 43 H 1.07996 * 127.99077 * 179.75509 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1511 0.9958 0.0000 4 6 3.4616 0.7084 -0.0006 5 6 4.5760 1.6854 -0.0013 6 8 5.7264 1.2946 -0.0022 7 7 4.3133 3.0073 -0.0008 8 6 5.4148 3.9731 -0.0009 9 1 6.3243 3.5803 -0.4555 10 6 5.6471 4.6455 1.3644 11 6 4.6503 5.7313 0.9197 12 1 3.6154 5.5078 1.1791 13 7 5.0530 7.0887 1.2960 14 6 4.4331 7.7223 2.3397 15 1 3.6475 7.2212 2.8858 16 6 4.8143 9.0086 2.6958 17 7 5.7720 9.6192 2.0307 18 14 3.9691 9.8728 4.1201 19 1 4.1631 9.0839 5.3632 20 1 4.5552 11.2257 4.2964 21 1 2.5172 9.9954 3.8333 22 6 5.0181 5.3563 -0.5180 23 6 4.0131 5.5154 -1.6593 24 6 4.7597 6.8125 -2.0202 25 6 5.9954 6.2071 -1.3299 26 6 3.5770 -0.6500 -0.0063 27 6 2.2300 -1.1102 -0.0005 28 8 1.8474 -2.2684 -0.0002 29 1 -0.3634 1.0276 0.0005 30 1 -0.3632 -0.5134 -0.8903 31 1 -0.3633 -0.5143 0.8897 32 1 3.3947 3.3192 0.0004 33 1 5.2968 4.0513 2.2084 34 1 6.6631 5.0159 1.5007 35 1 5.7587 7.5387 0.8058 36 1 6.0386 10.5179 2.2798 37 1 4.0901 4.7399 -2.4213 38 1 2.9898 5.6792 -1.3215 39 1 4.3678 7.6959 -1.5160 40 1 4.8876 6.9596 -3.0925 41 1 6.5557 6.9234 -0.7289 42 1 6.6297 5.6259 -1.9993 43 1 4.4814 -1.2403 -0.0119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078611766.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:24 Heat of formation + Delta-G solvation = 74.497371 kcal Electronic energy + Delta-G solvation = -27251.691425 eV Core-core repulsion = 23304.005758 eV Total energy + Delta-G solvation = -3947.685667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.39104 -40.82923 -39.25111 -38.41295 -35.26335 -34.65094 -34.20739 -32.53863 -32.41959 -30.03887 -28.34768 -25.59874 -25.18161 -24.25481 -24.04353 -23.60645 -22.12537 -20.87746 -20.16286 -19.09124 -18.69128 -18.06613 -17.56864 -17.00981 -16.28734 -15.68863 -15.45339 -15.23924 -15.02895 -14.85144 -14.62733 -14.11085 -13.98129 -13.92209 -13.69464 -13.55974 -13.29550 -12.77841 -12.62271 -12.12198 -11.90287 -11.82341 -11.46733 -10.97307 -10.90713 -10.82575 -10.67271 -10.40006 -10.30588 -10.26413 -10.17673 -10.00308 -9.75679 -9.51804 -8.98642 -8.92780 -8.83029 -7.05690 -5.86834 -3.15970 0.26293 1.26878 2.30643 2.48247 2.75096 3.11551 3.37370 3.42649 3.43349 4.26167 4.37350 4.50027 4.62615 4.68993 4.71041 4.77517 4.88411 4.95555 5.00232 5.07775 5.18009 5.33078 5.49991 5.53899 5.58974 5.64381 5.84212 5.89135 5.92719 5.98838 5.99911 6.21437 6.25386 6.30752 6.47591 6.50725 6.75174 6.80470 6.90166 7.09987 7.33678 7.60679 7.64842 7.73658 8.31800 9.43593 9.99607 10.34286 11.35191 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015966 B = 0.003049 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.272362 B = 9182.025004 C = 9902.165915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.453 5.453 3 O -0.003 6.003 4 C 0.036 3.964 5 C 0.601 3.399 6 O -0.497 6.497 7 N -0.682 5.682 8 C 0.125 3.875 9 H 0.102 0.898 10 C -0.174 4.174 11 C 0.191 3.809 12 H 0.075 0.925 13 N -0.707 5.707 14 C -0.247 4.247 15 H 0.070 0.930 16 C -0.009 4.009 17 N -0.931 5.931 18 Si 0.906 3.094 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.119 4.119 23 C -0.128 4.128 24 C -0.131 4.131 25 C -0.110 4.110 26 C -0.240 4.240 27 C 0.480 3.520 28 O -0.523 6.523 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.408 0.592 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.388 0.612 36 H 0.257 0.743 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.090 0.910 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.783 -14.463 -8.134 18.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.216 5.216 3 O -0.014 6.014 4 C -0.022 4.022 5 C 0.383 3.617 6 O -0.372 6.372 7 N -0.331 5.331 8 C 0.020 3.980 9 H 0.120 0.880 10 C -0.216 4.216 11 C 0.078 3.922 12 H 0.093 0.907 13 N -0.346 5.346 14 C -0.378 4.378 15 H 0.088 0.912 16 C -0.205 4.205 17 N -0.578 5.578 18 Si 0.737 3.263 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.212 1.212 22 C -0.122 4.122 23 C -0.165 4.165 24 C -0.169 4.169 25 C -0.147 4.147 26 C -0.264 4.264 27 C 0.279 3.721 28 O -0.404 6.404 29 H 0.119 0.881 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.243 0.757 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.224 0.776 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.109 0.891 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -7.571 -15.012 -7.975 18.609 hybrid contribution -0.602 0.758 0.725 1.210 sum -8.173 -14.253 -7.250 17.959 Atomic orbital electron populations 1.22146 0.70548 1.05364 1.04751 1.46093 1.05919 0.99841 1.69783 1.84017 1.15279 1.21074 1.81049 1.23524 0.81569 0.96434 1.00690 1.16668 0.85379 0.81500 0.78168 1.90896 1.18180 1.78460 1.49663 1.45580 1.11258 1.04337 1.71923 1.21916 0.89163 0.87208 0.99673 0.88046 1.24316 1.03101 0.99274 0.94886 1.21321 0.95722 0.86264 0.88879 0.90687 1.42377 1.43446 1.11430 1.37359 1.19214 1.14665 0.96685 1.07284 0.91211 1.24740 0.98928 0.97261 0.99576 1.69634 1.31583 1.14143 1.42444 0.86288 0.78825 0.78865 0.82300 1.21214 1.21670 1.21245 1.23601 0.98618 0.93522 0.96431 1.22672 0.98244 0.98100 0.97519 1.22741 0.96791 0.97831 0.99502 1.22474 0.96205 0.98359 0.97707 1.23329 0.99689 0.93359 1.10072 1.18336 0.86696 0.85520 0.81592 1.90968 1.79079 1.15869 1.54506 0.88143 0.89180 0.89150 0.75688 0.92053 0.89128 0.77617 0.93311 0.90809 0.91584 0.89123 0.92323 0.90085 0.90569 0.78966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.58 11.18 59.85 0.67 1.25 16 2 N -0.45 -4.29 3.68 -69.77 -0.26 -4.55 16 3 O 0.00 -0.03 10.69 16.84 0.18 0.15 16 4 C 0.04 0.38 7.25 -36.18 -0.26 0.12 16 5 C 0.60 7.26 7.84 -12.17 -0.10 7.17 16 6 O -0.50 -7.48 16.54 5.37 0.09 -7.39 16 7 N -0.68 -7.67 5.07 -54.20 -0.27 -7.95 16 8 C 0.13 1.67 4.08 -67.48 -0.28 1.39 16 9 H 0.10 1.41 7.54 -51.93 -0.39 1.02 16 10 C -0.17 -2.78 7.68 -25.75 -0.20 -2.98 16 11 C 0.19 3.32 4.29 -67.40 -0.29 3.04 16 12 H 0.08 1.29 8.12 -51.93 -0.42 0.86 16 13 N -0.71 -16.05 5.35 -52.91 -0.28 -16.33 16 14 C -0.25 -6.41 9.98 -15.06 -0.15 -6.56 16 15 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 16 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 17 N -0.93 -26.66 13.06 55.49 0.72 -25.94 16 18 Si 0.91 21.42 29.55 -169.99 -5.02 16.39 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 C -0.12 -1.68 0.92 -154.63 -0.14 -1.82 16 23 C -0.13 -1.58 7.43 -26.28 -0.20 -1.78 16 24 C -0.13 -1.83 8.08 -25.75 -0.21 -2.04 16 25 C -0.11 -1.57 7.45 -26.28 -0.20 -1.77 16 26 C -0.24 -2.68 10.94 -38.69 -0.42 -3.11 16 27 C 0.48 5.91 8.02 -14.66 -0.12 5.79 16 28 O -0.52 -8.05 17.92 4.94 0.09 -7.96 16 29 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.41 3.87 8.36 -40.82 -0.34 3.53 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 35 H 0.39 9.34 5.86 -40.82 -0.24 9.10 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.08 1.37 6.42 -51.93 -0.33 1.03 16 42 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.19 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 365.74 15.07 5.51 5.51 Total: -1.00 -32.13 365.74 -7.15 -39.28 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -5.92 Total: 10.40 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -1.98 Total: -1.63 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.09 Total: -54.76 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: 0.36 Total: -15.20 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.13 -7.15 -39.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078611766.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.778 kcal (2) G-P(sol) polarization free energy of solvation -32.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds