Wall clock time and date at job start Tue Mar 31 2020 13:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 O 1.20925 * 124.56511 * 2 1 4 4 C 1.34167 * 112.19408 * 180.02562 * 3 2 1 5 5 C 1.48202 * 126.38671 * 179.97438 * 4 3 2 6 6 O 1.21495 * 119.99713 * 180.02562 * 5 4 3 7 7 N 1.34776 * 120.00139 * 0.02901 * 5 4 3 8 8 C 1.46497 * 120.00198 * 179.97438 * 7 5 4 9 9 H 1.09000 * 112.94972 * 26.90123 * 8 7 5 10 10 C 1.53952 * 113.66105 * 255.49637 * 8 7 5 11 11 C 1.53950 * 87.37851 * 270.21915 * 10 8 7 12 12 H 1.09006 * 113.66206 * 89.78396 * 11 10 8 13 13 N 1.46500 * 113.66037 * 220.83072 * 11 10 8 14 14 C 1.36936 * 120.00465 * 255.49663 * 13 11 10 15 15 H 1.08000 * 119.99881 * 0.02562 * 14 13 11 16 16 C 1.38807 * 120.00046 * 180.02562 * 14 13 11 17 17 N 1.31621 * 120.00482 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 120.00009 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47117 * 59.99348 * 18 16 14 20 20 H 1.48495 * 109.47312 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.46847 * 299.99518 * 18 16 14 22 22 C 1.52909 * 113.66062 * 158.31111 * 8 7 5 23 23 C 1.52907 * 121.13536 * 323.85110 * 22 8 7 24 24 C 1.53958 * 86.78205 * 209.38733 * 23 22 8 25 25 C 1.52915 * 121.13447 * 215.29263 * 22 8 7 26 26 C 1.36324 * 107.22750 * 0.23372 * 4 3 2 27 27 C 1.34825 * 124.56994 * 180.02562 * 2 1 3 28 28 O 1.21976 * 127.14783 * 359.95146 * 27 2 1 29 29 H 1.09000 * 109.47429 * 359.97223 * 1 2 3 30 30 H 1.09002 * 109.46553 * 119.97232 * 1 2 3 31 31 H 1.08996 * 109.47007 * 239.96895 * 1 2 3 32 32 H 0.97008 * 119.99530 * 0.02562 * 7 5 4 33 33 H 1.09002 * 113.58142 * 24.86467 * 10 8 7 34 34 H 1.09004 * 113.57653 * 155.58067 * 10 8 7 35 35 H 0.96999 * 120.00029 * 75.50463 * 13 11 10 36 36 H 0.96993 * 120.00234 * 180.02562 * 17 16 14 37 37 H 1.08994 * 113.66316 * 323.85618 * 23 22 8 38 38 H 1.08997 * 113.66044 * 94.91866 * 23 22 8 39 39 H 1.09000 * 113.57861 * 270.13288 * 24 23 22 40 40 H 1.08990 * 113.65166 * 139.34938 * 24 23 22 41 41 H 1.09004 * 113.66330 * 265.09006 * 25 22 8 42 42 H 1.09001 * 113.65876 * 36.13855 * 25 22 8 43 43 H 1.07996 * 127.99077 * 179.75509 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1511 0.9958 0.0000 4 6 3.4616 0.7084 -0.0006 5 6 4.5760 1.6854 -0.0013 6 8 5.7264 1.2946 -0.0022 7 7 4.3133 3.0073 -0.0008 8 6 5.4148 3.9731 -0.0009 9 1 6.3243 3.5803 -0.4555 10 6 5.6471 4.6455 1.3644 11 6 4.6503 5.7313 0.9197 12 1 3.6154 5.5078 1.1791 13 7 5.0530 7.0887 1.2960 14 6 4.4331 7.7223 2.3397 15 1 3.6475 7.2212 2.8858 16 6 4.8143 9.0086 2.6958 17 7 5.7720 9.6192 2.0307 18 14 3.9691 9.8728 4.1201 19 1 4.1631 9.0839 5.3632 20 1 4.5552 11.2257 4.2964 21 1 2.5172 9.9954 3.8333 22 6 5.0181 5.3563 -0.5180 23 6 4.0131 5.5154 -1.6593 24 6 4.7597 6.8125 -2.0202 25 6 5.9954 6.2071 -1.3299 26 6 3.5770 -0.6500 -0.0063 27 6 2.2300 -1.1102 -0.0005 28 8 1.8474 -2.2684 -0.0002 29 1 -0.3634 1.0276 0.0005 30 1 -0.3632 -0.5134 -0.8903 31 1 -0.3633 -0.5143 0.8897 32 1 3.3947 3.3192 0.0004 33 1 5.2968 4.0513 2.2084 34 1 6.6631 5.0159 1.5007 35 1 5.7587 7.5387 0.8058 36 1 6.0386 10.5179 2.2798 37 1 4.0901 4.7399 -2.4213 38 1 2.9898 5.6792 -1.3215 39 1 4.3678 7.6959 -1.5160 40 1 4.8876 6.9596 -3.0925 41 1 6.5557 6.9234 -0.7289 42 1 6.6297 5.6259 -1.9993 43 1 4.4814 -1.2403 -0.0119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078611766.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:23 Heat of formation + Delta-G solvation = 52.816868 kcal Electronic energy + Delta-G solvation = -27252.631562 eV Core-core repulsion = 23304.005758 eV Total energy + Delta-G solvation = -3948.625804 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -46.23880 -42.00091 -40.34297 -39.36543 -36.42228 -35.87300 -35.40198 -33.87449 -33.40043 -31.76783 -29.08280 -26.74662 -26.59674 -25.56370 -25.14247 -24.55702 -23.51638 -21.92503 -21.27757 -20.00287 -19.56278 -19.50560 -18.74761 -18.22700 -17.43179 -16.78585 -16.62774 -16.35239 -16.16998 -16.13826 -15.77119 -15.51937 -15.07026 -15.03330 -14.78982 -14.24579 -14.22310 -13.90906 -13.66719 -13.46798 -13.29302 -13.13151 -12.84091 -12.74207 -12.50547 -12.19791 -11.94365 -11.84975 -11.79938 -11.38388 -11.31950 -11.11911 -11.06872 -10.89356 -10.67670 -10.09457 -9.68529 -8.93117 -7.91583 -5.18556 -0.62707 0.50982 1.36422 1.49430 1.51010 1.53945 1.56860 1.80939 2.20833 2.58386 3.35102 3.39381 3.46791 3.60627 3.71455 3.76942 3.86007 3.92010 4.05518 4.14615 4.27460 4.29267 4.33498 4.57959 4.63358 4.64205 4.69484 4.74772 4.81306 4.86985 4.91243 5.00121 5.07942 5.16427 5.19537 5.25419 5.50496 5.57886 5.60435 5.68187 6.13676 6.30806 6.44445 6.77420 6.82628 7.38297 8.16180 8.38315 9.31329 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015966 B = 0.003049 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.272362 B = 9182.025004 C = 9902.165915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.443 5.443 3 O 0.016 5.984 4 C 0.042 3.958 5 C 0.611 3.389 6 O -0.526 6.526 7 N -0.671 5.671 8 C 0.147 3.853 9 H 0.104 0.896 10 C -0.173 4.173 11 C 0.175 3.825 12 H 0.082 0.918 13 N -0.720 5.720 14 C -0.241 4.241 15 H 0.077 0.923 16 C -0.072 4.072 17 N -0.968 5.968 18 Si 0.966 3.034 19 H -0.281 1.281 20 H -0.300 1.300 21 H -0.277 1.277 22 C -0.110 4.110 23 C -0.111 4.111 24 C -0.133 4.133 25 C -0.112 4.112 26 C -0.244 4.244 27 C 0.468 3.532 28 O -0.564 6.564 29 H 0.129 0.871 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.420 0.580 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.378 0.622 36 H 0.250 0.750 37 H 0.102 0.898 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.080 0.920 41 H 0.048 0.952 42 H 0.101 0.899 43 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.550 -15.559 -8.965 20.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.203 5.203 3 O 0.003 5.997 4 C -0.017 4.017 5 C 0.394 3.606 6 O -0.403 6.403 7 N -0.321 5.321 8 C 0.042 3.958 9 H 0.122 0.878 10 C -0.214 4.214 11 C 0.064 3.936 12 H 0.100 0.900 13 N -0.359 5.359 14 C -0.373 4.373 15 H 0.095 0.905 16 C -0.264 4.264 17 N -0.618 5.618 18 Si 0.796 3.204 19 H -0.208 1.208 20 H -0.227 1.227 21 H -0.203 1.203 22 C -0.113 4.113 23 C -0.148 4.148 24 C -0.171 4.171 25 C -0.150 4.150 26 C -0.269 4.269 27 C 0.267 3.733 28 O -0.449 6.449 29 H 0.148 0.852 30 H 0.119 0.881 31 H 0.116 0.884 32 H 0.257 0.743 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.212 0.788 36 H 0.058 0.942 37 H 0.120 0.880 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.098 0.902 41 H 0.067 0.933 42 H 0.120 0.880 43 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -9.421 -16.136 -8.811 20.658 hybrid contribution -0.097 1.067 0.975 1.449 sum -9.518 -15.069 -7.835 19.469 Atomic orbital electron populations 1.22605 0.67951 1.07623 1.05751 1.46398 1.07110 0.99155 1.67676 1.84040 1.14751 1.20762 1.80108 1.23088 0.81818 0.95658 1.01146 1.16628 0.85166 0.81534 0.77311 1.90895 1.19539 1.78946 1.50880 1.45407 1.11357 1.03784 1.71518 1.21572 0.89868 0.87130 0.97231 0.87785 1.24159 1.01571 0.99052 0.96668 1.21663 0.96251 0.84015 0.91627 0.89998 1.42536 1.43226 1.13299 1.36816 1.19628 1.13785 0.96593 1.07253 0.90537 1.25457 1.00232 0.98424 1.02314 1.69788 1.33623 1.14089 1.44339 0.85326 0.78119 0.77244 0.79747 1.20785 1.22665 1.20307 1.23348 0.99462 0.93340 0.95103 1.22652 0.97727 0.97589 0.96812 1.22662 0.96691 0.97348 1.00350 1.22531 0.96474 0.98111 0.97867 1.23438 0.99762 0.93700 1.10039 1.18465 0.87294 0.85564 0.81966 1.90943 1.79731 1.17350 1.56881 0.85242 0.88070 0.88373 0.74286 0.92039 0.90914 0.78812 0.94163 0.87991 0.90991 0.92596 0.90181 0.93343 0.88029 0.78441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.73 11.18 127.77 1.43 2.15 16 2 N -0.44 -7.25 3.68 -492.74 -1.82 -9.06 16 3 O 0.02 0.24 10.69 70.42 0.75 1.00 16 4 C 0.04 0.79 7.25 24.47 0.18 0.97 16 5 C 0.61 13.19 7.84 86.89 0.68 13.87 16 6 O -0.53 -14.81 16.54 -3.70 -0.06 -14.87 16 7 N -0.67 -13.04 5.07 -443.70 -2.25 -15.29 16 8 C 0.15 3.60 4.08 45.28 0.18 3.78 16 9 H 0.10 2.63 7.54 -2.39 -0.02 2.61 16 10 C -0.17 -5.38 7.68 31.23 0.24 -5.14 16 11 C 0.17 5.93 4.29 45.33 0.19 6.12 16 12 H 0.08 2.66 8.12 -2.38 -0.02 2.64 16 13 N -0.72 -33.08 5.35 -321.32 -1.72 -34.80 16 14 C -0.24 -12.51 9.98 84.03 0.84 -11.67 16 15 H 0.08 3.78 7.83 -2.91 -0.02 3.76 16 16 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 17 N -0.97 -57.08 13.06 21.65 0.28 -56.79 16 18 Si 0.97 44.45 29.55 68.60 2.03 46.48 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 21 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 22 C -0.11 -2.90 0.92 -52.26 -0.05 -2.95 16 23 C -0.11 -2.38 7.43 30.89 0.23 -2.15 16 24 C -0.13 -3.50 8.08 31.23 0.25 -3.25 16 25 C -0.11 -3.10 7.45 30.89 0.23 -2.87 16 26 C -0.24 -5.11 10.94 22.85 0.25 -4.86 16 27 C 0.47 10.88 8.02 85.26 0.68 11.56 16 28 O -0.56 -17.13 17.92 -5.24 -0.09 -17.22 16 29 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.42 6.36 8.36 -92.70 -0.77 5.59 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 35 H 0.38 18.82 5.86 -92.71 -0.54 18.27 16 36 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 37 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.05 1.67 6.42 -2.38 -0.02 1.66 16 42 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.20 3.80 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -71.02 365.74 2.67 -68.36 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: -0.26 Total: 30.10 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 5.81 Total: 2.10 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -5.50 Total: -115.95 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: 0.60 Total: -31.09 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -71.02 2.67 -68.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078611766.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.172 kcal (2) G-P(sol) polarization free energy of solvation -71.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds