Wall clock time and date at job start Tue Mar 31 2020 13:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 O 1.20919 * 124.56918 * 2 1 4 4 C 1.34167 * 112.19112 * 180.15603 * 3 2 1 5 5 C 1.48203 * 126.38431 * 179.78291 * 4 3 2 6 6 O 1.21495 * 119.99674 * 179.68965 * 5 4 3 7 7 N 1.34771 * 120.00158 * 359.68544 * 5 4 3 8 8 C 1.46498 * 120.00252 * 179.97438 * 7 5 4 9 9 H 1.08994 * 112.95161 * 336.41251 * 8 7 5 10 10 C 1.53958 * 113.66040 * 107.81515 * 8 7 5 11 11 C 1.53946 * 87.29612 * 139.20611 * 10 8 7 12 12 H 1.09001 * 113.66711 * 89.73760 * 11 10 8 13 13 N 1.46497 * 113.66666 * 220.79618 * 11 10 8 14 14 C 1.36939 * 120.00358 * 252.18812 * 13 11 10 15 15 H 1.07997 * 119.99395 * 359.97438 * 14 13 11 16 16 C 1.38809 * 120.00162 * 179.97438 * 14 13 11 17 17 N 1.31615 * 120.00135 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99705 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47458 * 59.99873 * 18 16 14 20 20 H 1.48501 * 109.46978 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47022 * 299.99659 * 18 16 14 22 22 C 1.52907 * 113.66424 * 205.00132 * 8 7 5 23 23 C 1.52909 * 121.13536 * 94.91764 * 22 8 7 24 24 C 1.53952 * 86.78252 * 209.38099 * 23 22 8 25 25 C 1.53064 * 121.17777 * 346.28123 * 22 8 7 26 26 C 1.36321 * 107.23009 * 359.51982 * 4 3 2 27 27 C 1.34829 * 124.56310 * 179.61947 * 2 1 3 28 28 O 1.21978 * 127.15082 * 0.05910 * 27 2 1 29 29 H 1.08992 * 109.47206 * 270.38124 * 1 2 3 30 30 H 1.09002 * 109.46961 * 30.37894 * 1 2 3 31 31 H 1.09001 * 109.46988 * 150.37646 * 1 2 3 32 32 H 0.97006 * 120.00008 * 0.02562 * 7 5 4 33 33 H 1.09000 * 113.57861 * 24.60627 * 10 8 7 34 34 H 1.08997 * 113.58119 * 253.81025 * 10 8 7 35 35 H 0.97002 * 119.99897 * 72.18620 * 13 11 10 36 36 H 0.97003 * 120.00028 * 180.02562 * 17 16 14 37 37 H 1.09000 * 113.66588 * 94.90895 * 23 22 8 38 38 H 1.09002 * 113.66049 * 323.84790 * 23 22 8 39 39 H 1.09002 * 113.58142 * 139.33437 * 24 23 22 40 40 H 1.09004 * 113.57653 * 270.05037 * 24 23 22 41 41 H 1.09006 * 113.66264 * 36.13819 * 25 22 8 42 42 H 1.09001 * 113.71778 * 265.03884 * 25 22 8 43 43 H 1.07992 * 127.99412 * 180.28544 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 8 2.1512 0.9957 0.0000 4 6 3.4616 0.7081 -0.0034 5 6 4.5761 1.6850 -0.0089 6 8 5.7264 1.2942 -0.0059 7 7 4.3135 3.0069 -0.0173 8 6 5.4151 3.9726 -0.0222 9 1 6.3406 3.5636 0.3829 10 6 5.5966 4.6960 -1.3691 11 6 5.8528 5.9812 -0.5613 12 1 6.9014 6.1368 -0.3076 13 7 5.2212 7.1720 -1.1349 14 6 5.9892 8.1286 -1.7434 15 1 7.0607 8.0053 -1.8000 16 6 5.3907 9.2567 -2.2874 17 7 4.0849 9.4068 -2.2188 18 14 6.4384 10.5613 -3.1181 19 1 7.1685 9.9561 -4.2609 20 1 5.5657 11.6566 -3.6118 21 1 7.4140 11.1084 -2.1414 22 6 5.0393 5.3352 0.5609 23 6 5.3113 5.6697 2.0279 24 6 4.0876 6.6008 1.9525 25 6 3.5768 5.7196 0.7981 26 6 3.5770 -0.6502 0.0052 27 6 2.2300 -1.1103 0.0074 28 8 1.8472 -2.2685 0.0141 29 1 -0.3633 0.0068 1.0276 30 1 -0.3633 0.8866 -0.5197 31 1 -0.3633 -0.8934 -0.5080 32 1 3.3949 3.3189 -0.0195 33 1 4.6881 4.7327 -1.9702 34 1 6.4647 4.3554 -1.9335 35 1 4.2589 7.2829 -1.0837 36 1 3.6666 10.1949 -2.5993 37 1 6.2521 6.1959 2.1896 38 1 5.1762 4.8236 2.7018 39 1 3.4568 6.5647 2.8407 40 1 4.3323 7.6186 1.6487 41 1 2.9534 4.8875 1.1257 42 1 3.1337 6.2856 -0.0213 43 1 4.4812 -1.2406 0.0097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078611767.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:27 Heat of formation + Delta-G solvation = 73.427249 kcal Electronic energy + Delta-G solvation = -27223.295385 eV Core-core repulsion = 23275.563314 eV Total energy + Delta-G solvation = -3947.732071 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.38749 -40.79835 -39.24858 -38.41754 -35.07794 -34.65620 -34.29877 -32.63154 -32.50290 -30.05001 -28.38075 -25.61222 -25.25307 -24.26752 -23.96634 -23.57151 -21.94925 -20.64456 -20.43507 -19.09731 -18.69078 -18.04645 -17.57807 -16.92921 -16.49336 -15.74665 -15.37796 -15.31381 -14.96530 -14.80580 -14.65851 -14.16084 -14.07136 -13.93373 -13.72028 -13.24959 -13.13228 -12.89827 -12.68064 -12.19622 -11.99034 -11.62802 -11.33285 -11.07611 -10.89971 -10.83764 -10.67136 -10.40462 -10.30131 -10.27195 -10.13793 -10.06741 -9.84006 -9.55423 -8.94728 -8.93290 -8.82724 -7.06554 -5.87485 -3.16344 0.26862 1.27573 2.31027 2.52511 2.75998 3.14570 3.38371 3.43695 3.43912 4.27461 4.39681 4.51213 4.65018 4.70050 4.70099 4.79393 4.80415 4.93508 5.00850 5.09291 5.16624 5.32246 5.50355 5.54335 5.58028 5.67093 5.80321 5.85946 5.88679 5.97319 6.04734 6.22962 6.25611 6.33749 6.42121 6.47706 6.73490 6.80284 6.90594 7.13146 7.34306 7.62175 7.64975 7.74216 8.31200 9.43164 9.98341 10.33123 11.34592 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020264 B = 0.002779 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.422312 B =10072.915236 C =10177.973862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.453 5.453 3 O -0.003 6.003 4 C 0.035 3.965 5 C 0.599 3.401 6 O -0.500 6.500 7 N -0.689 5.689 8 C 0.126 3.874 9 H 0.117 0.883 10 C -0.174 4.174 11 C 0.194 3.806 12 H 0.084 0.916 13 N -0.704 5.704 14 C -0.246 4.246 15 H 0.072 0.928 16 C -0.009 4.009 17 N -0.932 5.932 18 Si 0.907 3.093 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.285 1.285 22 C -0.120 4.120 23 C -0.126 4.126 24 C -0.130 4.130 25 C -0.118 4.118 26 C -0.240 4.240 27 C 0.481 3.519 28 O -0.525 6.525 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.407 0.593 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.387 0.613 36 H 0.257 0.743 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.152 -14.516 7.608 17.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.216 5.216 3 O -0.014 6.014 4 C -0.023 4.023 5 C 0.380 3.620 6 O -0.375 6.375 7 N -0.339 5.339 8 C 0.022 3.978 9 H 0.135 0.865 10 C -0.217 4.217 11 C 0.080 3.920 12 H 0.102 0.898 13 N -0.343 5.343 14 C -0.377 4.377 15 H 0.090 0.910 16 C -0.205 4.205 17 N -0.580 5.580 18 Si 0.738 3.262 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.212 1.212 22 C -0.122 4.122 23 C -0.163 4.163 24 C -0.167 4.167 25 C -0.156 4.156 26 C -0.265 4.265 27 C 0.279 3.721 28 O -0.406 6.406 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.124 0.876 32 H 0.243 0.757 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.223 0.777 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.110 0.890 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -5.730 -15.011 7.519 17.740 hybrid contribution -0.290 0.837 -0.524 1.029 sum -6.019 -14.174 6.995 16.913 Atomic orbital electron populations 1.22158 0.70560 1.05794 1.04517 1.46067 1.05918 0.99861 1.69775 1.84010 1.15289 1.21081 1.81053 1.23601 0.81603 0.96528 1.00551 1.16745 0.85357 0.81708 0.78156 1.90887 1.18171 1.78515 1.49882 1.46005 1.11656 1.04499 1.71724 1.22556 0.89707 0.86084 0.99449 0.86506 1.24330 1.02247 0.99148 0.95927 1.21039 0.95468 0.86051 0.89395 0.89806 1.42333 1.07020 1.18784 1.66158 1.19251 0.91075 0.98240 1.29163 0.91039 1.24736 0.95723 0.98601 1.01488 1.69634 1.08124 1.29614 1.50587 0.86273 0.79152 0.81367 0.79416 1.21194 1.21713 1.21196 1.23697 0.98214 0.94275 0.96056 1.22712 0.99133 0.99077 0.95419 1.22724 0.96939 0.99534 0.97499 1.22477 0.94410 0.99077 0.99624 1.23324 0.99669 0.93387 1.10154 1.18353 0.86729 0.85528 0.81508 1.90967 1.79075 1.15867 1.54642 0.90043 0.88637 0.87626 0.75710 0.89943 0.91671 0.77737 0.93356 0.91278 0.90929 0.92455 0.89030 0.91162 0.90116 0.78970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.58 11.22 59.85 0.67 1.25 16 2 N -0.45 -4.36 3.68 -69.77 -0.26 -4.62 16 3 O 0.00 -0.03 10.69 16.84 0.18 0.15 16 4 C 0.04 0.38 7.25 -36.18 -0.26 0.12 16 5 C 0.60 7.31 7.84 -12.17 -0.10 7.22 16 6 O -0.50 -7.50 16.49 5.37 0.09 -7.42 16 7 N -0.69 -7.86 5.25 -54.20 -0.28 -8.14 16 8 C 0.13 1.67 4.12 -67.48 -0.28 1.39 16 9 H 0.12 1.59 7.46 -51.93 -0.39 1.20 16 10 C -0.17 -2.74 7.68 -25.75 -0.20 -2.94 16 11 C 0.19 3.42 4.36 -67.48 -0.29 3.13 16 12 H 0.08 1.50 8.10 -51.93 -0.42 1.07 16 13 N -0.70 -15.87 5.32 -52.99 -0.28 -16.15 16 14 C -0.25 -6.37 9.97 -15.06 -0.15 -6.52 16 15 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 16 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 17 N -0.93 -26.51 13.06 55.49 0.72 -25.78 16 18 Si 0.91 21.44 29.55 -169.99 -5.02 16.42 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 C -0.12 -1.69 1.07 -154.63 -0.16 -1.85 16 23 C -0.13 -1.64 7.84 -26.28 -0.21 -1.85 16 24 C -0.13 -1.80 8.08 -25.75 -0.21 -2.01 16 25 C -0.12 -1.60 6.79 -26.20 -0.18 -1.77 16 26 C -0.24 -2.72 10.94 -38.69 -0.42 -3.15 16 27 C 0.48 5.95 8.02 -14.66 -0.12 5.84 16 28 O -0.52 -8.07 17.84 4.94 0.09 -7.99 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.11 0.54 8.03 -51.93 -0.42 0.13 16 32 H 0.41 4.00 6.85 -40.82 -0.28 3.72 16 33 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.39 9.17 5.91 -40.82 -0.24 8.93 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 41 H 0.07 0.77 7.03 -51.93 -0.37 0.40 16 42 H 0.08 1.29 6.41 -51.93 -0.33 0.95 16 43 H 0.19 1.96 8.06 -52.49 -0.42 1.53 16 LS Contribution 363.02 15.07 5.47 5.47 Total: -1.00 -31.76 363.02 -7.09 -38.86 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -5.80 Total: 10.69 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -2.00 Total: -1.49 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.10 Total: -54.70 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: 0.36 Total: -15.25 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.76 -7.09 -38.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078611767.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.283 kcal (2) G-P(sol) polarization free energy of solvation -31.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds