Wall clock time and date at job start Tue Mar 31 2020 13:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 O 1.20919 * 124.56918 * 2 1 4 4 C 1.34167 * 112.19112 * 180.15603 * 3 2 1 5 5 C 1.48203 * 126.38431 * 179.78291 * 4 3 2 6 6 O 1.21495 * 119.99674 * 179.68965 * 5 4 3 7 7 N 1.34771 * 120.00158 * 359.68544 * 5 4 3 8 8 C 1.46498 * 120.00252 * 179.97438 * 7 5 4 9 9 H 1.08994 * 112.95161 * 336.41251 * 8 7 5 10 10 C 1.53958 * 113.66040 * 107.81515 * 8 7 5 11 11 C 1.53946 * 87.29612 * 139.20611 * 10 8 7 12 12 H 1.09001 * 113.66711 * 89.73760 * 11 10 8 13 13 N 1.46497 * 113.66666 * 220.79618 * 11 10 8 14 14 C 1.36939 * 120.00358 * 252.18812 * 13 11 10 15 15 H 1.07997 * 119.99395 * 359.97438 * 14 13 11 16 16 C 1.38809 * 120.00162 * 179.97438 * 14 13 11 17 17 N 1.31615 * 120.00135 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99705 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47458 * 59.99873 * 18 16 14 20 20 H 1.48501 * 109.46978 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47022 * 299.99659 * 18 16 14 22 22 C 1.52907 * 113.66424 * 205.00132 * 8 7 5 23 23 C 1.52909 * 121.13536 * 94.91764 * 22 8 7 24 24 C 1.53952 * 86.78252 * 209.38099 * 23 22 8 25 25 C 1.53064 * 121.17777 * 346.28123 * 22 8 7 26 26 C 1.36321 * 107.23009 * 359.51982 * 4 3 2 27 27 C 1.34829 * 124.56310 * 179.61947 * 2 1 3 28 28 O 1.21978 * 127.15082 * 0.05910 * 27 2 1 29 29 H 1.08992 * 109.47206 * 270.38124 * 1 2 3 30 30 H 1.09002 * 109.46961 * 30.37894 * 1 2 3 31 31 H 1.09001 * 109.46988 * 150.37646 * 1 2 3 32 32 H 0.97006 * 120.00008 * 0.02562 * 7 5 4 33 33 H 1.09000 * 113.57861 * 24.60627 * 10 8 7 34 34 H 1.08997 * 113.58119 * 253.81025 * 10 8 7 35 35 H 0.97002 * 119.99897 * 72.18620 * 13 11 10 36 36 H 0.97003 * 120.00028 * 180.02562 * 17 16 14 37 37 H 1.09000 * 113.66588 * 94.90895 * 23 22 8 38 38 H 1.09002 * 113.66049 * 323.84790 * 23 22 8 39 39 H 1.09002 * 113.58142 * 139.33437 * 24 23 22 40 40 H 1.09004 * 113.57653 * 270.05037 * 24 23 22 41 41 H 1.09006 * 113.66264 * 36.13819 * 25 22 8 42 42 H 1.09001 * 113.71778 * 265.03884 * 25 22 8 43 43 H 1.07992 * 127.99412 * 180.28544 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 8 2.1512 0.9957 0.0000 4 6 3.4616 0.7081 -0.0034 5 6 4.5761 1.6850 -0.0089 6 8 5.7264 1.2942 -0.0059 7 7 4.3135 3.0069 -0.0173 8 6 5.4151 3.9726 -0.0222 9 1 6.3406 3.5636 0.3829 10 6 5.5966 4.6960 -1.3691 11 6 5.8528 5.9812 -0.5613 12 1 6.9014 6.1368 -0.3076 13 7 5.2212 7.1720 -1.1349 14 6 5.9892 8.1286 -1.7434 15 1 7.0607 8.0053 -1.8000 16 6 5.3907 9.2567 -2.2874 17 7 4.0849 9.4068 -2.2188 18 14 6.4384 10.5613 -3.1181 19 1 7.1685 9.9561 -4.2609 20 1 5.5657 11.6566 -3.6118 21 1 7.4140 11.1084 -2.1414 22 6 5.0393 5.3352 0.5609 23 6 5.3113 5.6697 2.0279 24 6 4.0876 6.6008 1.9525 25 6 3.5768 5.7196 0.7981 26 6 3.5770 -0.6502 0.0052 27 6 2.2300 -1.1103 0.0074 28 8 1.8472 -2.2685 0.0141 29 1 -0.3633 0.0068 1.0276 30 1 -0.3633 0.8866 -0.5197 31 1 -0.3633 -0.8934 -0.5080 32 1 3.3949 3.3189 -0.0195 33 1 4.6881 4.7327 -1.9702 34 1 6.4647 4.3554 -1.9335 35 1 4.2589 7.2829 -1.0837 36 1 3.6666 10.1949 -2.5993 37 1 6.2521 6.1959 2.1896 38 1 5.1762 4.8236 2.7018 39 1 3.4568 6.5647 2.8407 40 1 4.3323 7.6186 1.6487 41 1 2.9534 4.8875 1.1257 42 1 3.1337 6.2856 -0.0213 43 1 4.4812 -1.2406 0.0097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078611767.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:26 Heat of formation + Delta-G solvation = 52.161820 kcal Electronic energy + Delta-G solvation = -27224.217523 eV Core-core repulsion = 23275.563314 eV Total energy + Delta-G solvation = -3948.654209 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -46.24555 -41.96833 -40.34281 -39.37690 -36.28133 -35.88788 -35.40382 -34.08620 -33.40647 -31.79686 -29.12855 -26.79728 -26.56032 -25.58615 -25.11784 -24.57036 -23.25137 -21.80544 -21.49372 -20.01236 -19.57939 -19.51212 -18.71901 -18.18472 -17.65008 -16.77322 -16.51511 -16.36505 -16.27328 -16.07723 -15.86907 -15.54980 -15.04059 -14.84190 -14.78161 -14.39895 -14.23561 -13.86695 -13.66676 -13.49922 -13.16844 -13.09425 -12.85965 -12.69369 -12.36036 -12.28626 -12.06198 -11.84875 -11.77065 -11.40028 -11.37310 -11.12202 -11.04748 -10.98026 -10.71259 -10.04462 -9.69224 -8.92928 -7.92142 -5.18410 -0.63012 0.50818 1.36161 1.49837 1.50865 1.56426 1.58540 1.80972 2.22489 2.58821 3.35188 3.39818 3.48902 3.59924 3.65515 3.76191 3.85528 3.93153 4.04851 4.14404 4.26082 4.30661 4.34057 4.54828 4.63164 4.65403 4.68979 4.75219 4.77594 4.80829 4.88911 5.03250 5.13716 5.14928 5.19299 5.25043 5.49287 5.53511 5.63656 5.69664 6.15002 6.30727 6.43592 6.76553 6.81927 7.38572 8.15086 8.38700 9.30559 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020264 B = 0.002779 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.422312 B =10072.915236 C =10177.973862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.443 5.443 3 O 0.014 5.986 4 C 0.040 3.960 5 C 0.609 3.391 6 O -0.526 6.526 7 N -0.679 5.679 8 C 0.148 3.852 9 H 0.122 0.878 10 C -0.170 4.170 11 C 0.173 3.827 12 H 0.080 0.920 13 N -0.715 5.715 14 C -0.241 4.241 15 H 0.074 0.926 16 C -0.070 4.070 17 N -0.966 5.966 18 Si 0.965 3.035 19 H -0.281 1.281 20 H -0.298 1.298 21 H -0.280 1.280 22 C -0.112 4.112 23 C -0.115 4.115 24 C -0.132 4.132 25 C -0.112 4.112 26 C -0.244 4.244 27 C 0.468 3.532 28 O -0.565 6.565 29 H 0.100 0.900 30 H 0.121 0.879 31 H 0.107 0.893 32 H 0.417 0.583 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.379 0.621 36 H 0.250 0.750 37 H 0.062 0.938 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.053 0.947 41 H 0.106 0.894 42 H 0.053 0.947 43 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.542 -15.456 8.683 18.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.204 5.204 3 O 0.002 5.998 4 C -0.019 4.019 5 C 0.391 3.609 6 O -0.403 6.403 7 N -0.329 5.329 8 C 0.043 3.957 9 H 0.140 0.860 10 C -0.212 4.212 11 C 0.062 3.938 12 H 0.097 0.903 13 N -0.354 5.354 14 C -0.373 4.373 15 H 0.092 0.908 16 C -0.262 4.262 17 N -0.616 5.616 18 Si 0.794 3.206 19 H -0.208 1.208 20 H -0.225 1.225 21 H -0.206 1.206 22 C -0.114 4.114 23 C -0.153 4.153 24 C -0.169 4.169 25 C -0.150 4.150 26 C -0.269 4.269 27 C 0.267 3.733 28 O -0.449 6.449 29 H 0.119 0.881 30 H 0.139 0.861 31 H 0.126 0.874 32 H 0.255 0.745 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.213 0.787 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.124 0.876 42 H 0.071 0.929 43 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -6.134 -15.967 8.613 19.151 hybrid contribution -0.182 1.105 -0.836 1.397 sum -6.316 -14.862 7.777 17.924 Atomic orbital electron populations 1.22607 0.67986 1.07216 1.06290 1.46377 1.07101 0.99183 1.67713 1.84032 1.14805 1.20803 1.80157 1.23186 0.81845 0.95806 1.01061 1.16694 0.85163 0.81715 0.77335 1.90886 1.19437 1.78965 1.51018 1.45811 1.11727 1.04015 1.71366 1.22203 0.90405 0.85999 0.97064 0.86033 1.24152 1.01747 0.98332 0.96933 1.21333 0.95746 0.85139 0.91554 0.90253 1.42431 1.06555 1.19821 1.66584 1.19624 0.91527 0.98529 1.27636 0.90769 1.25414 0.96716 1.00800 1.03293 1.69773 1.09471 1.29975 1.52419 0.85344 0.77659 0.78975 0.78573 1.20771 1.22474 1.20608 1.23446 0.98361 0.93718 0.95866 1.22715 0.98382 0.99512 0.94665 1.22643 0.98037 0.97736 0.98526 1.22511 0.94131 0.99770 0.98545 1.23440 0.99752 0.93697 1.10048 1.18481 0.87320 0.85568 0.81891 1.90943 1.79712 1.17315 1.56973 0.88123 0.86050 0.87416 0.74485 0.90888 0.91829 0.78658 0.94129 0.91949 0.88155 0.90097 0.92778 0.87556 0.92868 0.78382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.76 11.22 127.77 1.43 2.19 16 2 N -0.44 -7.45 3.68 -492.73 -1.82 -9.27 16 3 O 0.01 0.23 10.69 70.43 0.75 0.99 16 4 C 0.04 0.77 7.25 24.47 0.18 0.95 16 5 C 0.61 13.28 7.84 86.89 0.68 13.97 16 6 O -0.53 -14.71 16.49 -3.70 -0.06 -14.77 16 7 N -0.68 -13.47 5.25 -443.71 -2.33 -15.80 16 8 C 0.15 3.58 4.12 45.28 0.19 3.76 16 9 H 0.12 2.97 7.46 -2.39 -0.02 2.95 16 10 C -0.17 -5.18 7.68 31.23 0.24 -4.94 16 11 C 0.17 6.05 4.36 45.28 0.20 6.25 16 12 H 0.08 2.82 8.10 -2.39 -0.02 2.80 16 13 N -0.72 -32.71 5.32 -321.57 -1.71 -34.42 16 14 C -0.24 -12.61 9.97 84.03 0.84 -11.78 16 15 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 16 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 17 N -0.97 -56.27 13.06 21.65 0.28 -55.99 16 18 Si 0.96 44.65 29.55 68.60 2.03 46.68 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 22 C -0.11 -2.94 1.07 -52.26 -0.06 -3.00 16 23 C -0.12 -2.72 7.84 30.89 0.24 -2.47 16 24 C -0.13 -3.45 8.08 31.23 0.25 -3.20 16 25 C -0.11 -2.80 6.79 30.94 0.21 -2.59 16 26 C -0.24 -5.17 10.94 22.84 0.25 -4.92 16 27 C 0.47 11.00 8.02 85.25 0.68 11.68 16 28 O -0.56 -17.18 17.84 -5.24 -0.09 -17.28 16 29 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.11 0.90 8.03 -2.39 -0.02 0.88 16 32 H 0.42 6.71 6.85 -92.70 -0.63 6.08 16 33 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.38 18.43 5.91 -92.71 -0.55 17.88 16 36 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 37 H 0.06 1.57 8.14 -2.39 -0.02 1.56 16 38 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 41 H 0.11 1.90 7.03 -2.38 -0.02 1.88 16 42 H 0.05 1.67 6.41 -2.39 -0.02 1.65 16 43 H 0.20 3.83 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -69.91 363.02 2.73 -67.18 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: -0.12 Total: 30.13 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 5.80 Total: 2.55 kcal Atomic # 7 Polarization: -109.90 SS G_CDS: -5.57 Total: -115.48 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: 0.60 Total: -31.06 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -69.91 2.73 -67.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078611767.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.344 kcal (2) G-P(sol) polarization free energy of solvation -69.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds