Wall clock time and date at job start Tue Mar 31 2020 13:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 O 1.20920 * 124.57171 * 2 1 4 4 C 1.34168 * 112.19416 * 180.17763 * 3 2 1 5 5 C 1.48210 * 126.38492 * 179.82445 * 4 3 2 6 6 O 1.21493 * 120.00058 * 179.69031 * 5 4 3 7 7 N 1.34779 * 119.99858 * 359.68793 * 5 4 3 8 8 C 1.46503 * 120.00222 * 179.97438 * 7 5 4 9 9 H 1.09001 * 112.94398 * 333.10759 * 8 7 5 10 10 C 1.53950 * 113.65952 * 104.50431 * 8 7 5 11 11 C 1.53952 * 87.37851 * 89.78430 * 10 8 7 12 12 H 1.09002 * 113.65815 * 270.21969 * 11 10 8 13 13 N 1.46497 * 113.66301 * 139.25791 * 11 10 8 14 14 C 1.36934 * 119.99961 * 104.50379 * 13 11 10 15 15 H 1.07996 * 120.00336 * 0.02562 * 14 13 11 16 16 C 1.38820 * 119.99868 * 179.97438 * 14 13 11 17 17 N 1.31618 * 119.99734 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99874 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46939 * 90.00205 * 18 16 14 20 20 H 1.48501 * 109.47114 * 210.00043 * 18 16 14 21 21 H 1.48499 * 109.47599 * 330.00353 * 18 16 14 22 22 C 1.52909 * 86.78252 * 24.68886 * 11 10 8 23 23 C 1.52907 * 121.13536 * 209.38099 * 22 11 10 24 24 C 1.53958 * 86.78205 * 209.38733 * 23 22 11 25 25 C 1.52915 * 121.13447 * 100.82251 * 22 11 10 26 26 C 1.36311 * 107.23030 * 359.56325 * 4 3 2 27 27 C 1.34827 * 124.56632 * 179.69566 * 2 1 3 28 28 O 1.21981 * 127.14835 * 359.97438 * 27 2 1 29 29 H 1.09004 * 109.47251 * 270.30684 * 1 2 3 30 30 H 1.09004 * 109.47267 * 30.30279 * 1 2 3 31 31 H 1.08999 * 109.47259 * 150.30434 * 1 2 3 32 32 H 0.97001 * 119.99924 * 0.02562 * 7 5 4 33 33 H 1.09002 * 113.58302 * 335.14031 * 10 8 7 34 34 H 1.09004 * 113.57731 * 204.42204 * 10 8 7 35 35 H 0.97000 * 119.99771 * 284.50085 * 13 11 10 36 36 H 0.97002 * 119.99791 * 179.97438 * 17 16 14 37 37 H 1.08994 * 113.66316 * 323.85618 * 23 22 11 38 38 H 1.08997 * 113.66044 * 94.91866 * 23 22 11 39 39 H 1.09000 * 113.57861 * 270.13288 * 24 23 22 40 40 H 1.08990 * 113.65166 * 139.34938 * 24 23 22 41 41 H 1.09004 * 113.66330 * 265.09006 * 25 22 11 42 42 H 1.09001 * 113.65876 * 36.13855 * 25 22 11 43 43 H 1.08003 * 127.99605 * 180.24151 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 8 2.1511 0.9957 0.0000 4 6 3.4616 0.7081 -0.0039 5 6 4.5761 1.6851 -0.0086 6 8 5.7265 1.2943 -0.0062 7 7 4.3134 3.0070 -0.0158 8 6 5.4150 3.9728 -0.0199 9 1 6.3243 3.5821 0.4369 10 6 5.6478 4.6385 -1.3884 11 6 4.6510 5.7265 -0.9496 12 1 3.6162 5.5016 -1.2082 13 7 5.0528 7.0817 -1.3342 14 6 4.4318 7.7088 -2.3812 15 1 3.6455 7.2045 -2.9232 16 6 4.8122 8.9933 -2.7453 17 7 5.7695 9.6085 -2.0838 18 14 3.9656 9.8484 -4.1740 19 1 2.7913 10.6061 -3.6718 20 1 4.9172 10.7845 -4.8248 21 1 3.5152 8.8346 -5.1612 22 6 5.0173 5.3604 0.4891 23 6 4.0110 5.5273 1.6282 24 6 5.2229 5.7580 2.5492 25 6 5.9948 6.2142 1.2978 26 6 3.5769 -0.6501 0.0034 27 6 2.2299 -1.1102 0.0059 28 8 1.8472 -2.2684 0.0125 29 1 -0.3634 0.0055 1.0277 30 1 -0.3634 0.8873 -0.5185 31 1 -0.3634 -0.8927 -0.5091 32 1 3.3949 3.3189 -0.0174 33 1 5.2979 4.0401 -2.2296 34 1 6.6640 5.0081 -1.5262 35 1 5.7587 7.5349 -0.8471 36 1 6.0356 10.5059 -2.3384 37 1 3.3702 6.4025 1.5210 38 1 3.4545 4.6185 1.8569 39 1 5.6139 4.8424 2.9928 40 1 5.0712 6.5512 3.2811 41 1 7.0230 5.8541 1.2625 42 1 5.9116 7.2825 1.0976 43 1 4.4812 -1.2406 0.0065 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078611768.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:30 Heat of formation + Delta-G solvation = 74.224809 kcal Electronic energy + Delta-G solvation = -27241.593668 eV Core-core repulsion = 23293.896182 eV Total energy + Delta-G solvation = -3947.697486 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.40309 -40.86963 -39.24030 -38.42870 -35.27922 -34.66713 -34.26698 -32.54892 -32.44241 -29.99704 -28.35971 -25.62136 -25.23264 -24.36214 -23.94185 -23.58591 -22.18484 -20.87059 -20.21215 -19.14681 -18.70423 -18.06522 -17.48652 -17.17455 -16.18638 -15.70300 -15.49709 -15.32480 -15.03383 -14.86843 -14.61728 -14.09526 -13.98623 -13.93973 -13.72418 -13.53753 -13.25652 -12.83804 -12.57703 -12.27578 -11.95893 -11.78168 -11.50151 -11.03264 -10.94324 -10.81690 -10.73206 -10.42050 -10.31895 -10.26688 -10.19027 -9.98964 -9.77419 -9.52404 -9.02713 -8.90630 -8.84241 -7.04265 -5.86411 -3.15200 0.24808 1.25818 2.29146 2.45907 2.73344 3.09112 3.37129 3.43108 3.44563 4.24399 4.38025 4.50575 4.57265 4.67704 4.69378 4.77927 4.83448 4.91474 5.00188 5.07169 5.11267 5.33549 5.48961 5.52589 5.54997 5.63420 5.80334 5.88499 5.92928 5.97048 6.07985 6.11841 6.21522 6.27705 6.33037 6.50296 6.66005 6.78058 6.90364 7.08794 7.32145 7.61798 7.63569 7.71258 8.32311 9.44099 10.00786 10.35440 11.35800 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015403 B = 0.003084 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.442387 B = 9076.920637 C = 9920.973830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.452 5.452 3 O -0.002 6.002 4 C 0.036 3.964 5 C 0.602 3.398 6 O -0.496 6.496 7 N -0.683 5.683 8 C 0.139 3.861 9 H 0.102 0.898 10 C -0.174 4.174 11 C 0.180 3.820 12 H 0.074 0.926 13 N -0.708 5.708 14 C -0.246 4.246 15 H 0.070 0.930 16 C -0.010 4.010 17 N -0.931 5.931 18 Si 0.906 3.094 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.282 1.282 22 C -0.124 4.124 23 C -0.124 4.124 24 C -0.141 4.141 25 C -0.104 4.104 26 C -0.239 4.239 27 C 0.481 3.519 28 O -0.524 6.524 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.408 0.592 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.387 0.613 36 H 0.256 0.744 37 H 0.087 0.913 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.099 0.901 43 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.679 -14.866 8.288 18.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.216 5.216 3 O -0.014 6.014 4 C -0.022 4.022 5 C 0.384 3.616 6 O -0.371 6.371 7 N -0.333 5.333 8 C 0.034 3.966 9 H 0.120 0.880 10 C -0.216 4.216 11 C 0.067 3.933 12 H 0.092 0.908 13 N -0.346 5.346 14 C -0.377 4.377 15 H 0.088 0.912 16 C -0.206 4.206 17 N -0.578 5.578 18 Si 0.737 3.263 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.207 1.207 22 C -0.126 4.126 23 C -0.161 4.161 24 C -0.178 4.178 25 C -0.142 4.142 26 C -0.264 4.264 27 C 0.279 3.721 28 O -0.405 6.405 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.124 0.876 32 H 0.244 0.756 33 H 0.079 0.921 34 H 0.109 0.891 35 H 0.223 0.777 36 H 0.066 0.934 37 H 0.106 0.894 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.117 0.883 43 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -7.469 -15.434 8.124 18.974 hybrid contribution -0.609 0.795 -0.712 1.229 sum -8.078 -14.639 7.412 18.289 Atomic orbital electron populations 1.22160 0.70537 1.05803 1.04530 1.46068 1.05925 0.99851 1.69747 1.84011 1.15244 1.21073 1.81052 1.23506 0.81583 0.96421 1.00725 1.16651 0.85395 0.81446 0.78123 1.90898 1.18169 1.78447 1.49582 1.45586 1.11287 1.04376 1.72016 1.21740 0.88994 0.86468 0.99406 0.87975 1.24335 1.03222 0.99392 0.94648 1.21391 0.95626 0.86176 0.90106 0.90819 1.42352 1.43356 1.11718 1.37180 1.19268 1.14485 0.96845 1.07097 0.91158 1.24749 0.98964 0.97293 0.99641 1.69648 1.31668 1.14043 1.42487 0.86207 0.78565 0.79428 0.82071 1.21701 1.21738 1.20735 1.23438 0.98666 0.94211 0.96286 1.22656 0.96223 1.01493 0.95752 1.22838 0.97439 1.00853 0.96680 1.22475 0.97143 1.00690 0.93856 1.23329 0.99701 0.93349 1.10002 1.18349 0.86712 0.85537 0.81521 1.90970 1.79058 1.15862 1.54605 0.90025 0.88621 0.87628 0.75621 0.92068 0.89119 0.77733 0.93385 0.89415 0.92294 0.90876 0.91744 0.91633 0.88295 0.78938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.56 11.22 59.84 0.67 1.23 16 2 N -0.45 -4.27 3.68 -69.77 -0.26 -4.53 16 3 O 0.00 -0.02 10.69 16.84 0.18 0.16 16 4 C 0.04 0.38 7.25 -36.18 -0.26 0.12 16 5 C 0.60 7.24 7.84 -12.16 -0.10 7.15 16 6 O -0.50 -7.42 16.54 5.37 0.09 -7.33 16 7 N -0.68 -7.68 4.87 -54.12 -0.26 -7.94 16 8 C 0.14 1.85 4.09 -67.40 -0.28 1.57 16 9 H 0.10 1.42 7.55 -51.93 -0.39 1.02 16 10 C -0.17 -2.79 7.68 -25.75 -0.20 -2.99 16 11 C 0.18 3.15 4.28 -67.48 -0.29 2.86 16 12 H 0.07 1.27 8.12 -51.93 -0.42 0.85 16 13 N -0.71 -16.21 5.34 -52.99 -0.28 -16.49 16 14 C -0.25 -6.41 9.98 -15.06 -0.15 -6.56 16 15 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 16 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 17 N -0.93 -26.81 13.06 55.49 0.72 -26.08 16 18 Si 0.91 21.50 29.55 -169.99 -5.02 16.48 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C -0.12 -1.74 0.91 -154.63 -0.14 -1.89 16 23 C -0.12 -1.54 7.60 -26.28 -0.20 -1.74 16 24 C -0.14 -1.69 8.08 -25.75 -0.21 -1.90 16 25 C -0.10 -1.49 7.16 -26.28 -0.19 -1.68 16 26 C -0.24 -2.66 10.94 -38.70 -0.42 -3.08 16 27 C 0.48 5.87 8.02 -14.66 -0.12 5.75 16 28 O -0.52 -7.99 17.84 4.94 0.09 -7.90 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.11 0.53 8.03 -51.93 -0.42 0.11 16 32 H 0.41 3.88 8.08 -40.82 -0.33 3.55 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 35 H 0.39 9.40 6.13 -40.82 -0.25 9.15 16 36 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.06 0.62 7.51 -51.93 -0.39 0.23 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.10 1.66 6.97 -51.93 -0.36 1.30 16 43 H 0.19 1.92 8.06 -52.48 -0.42 1.50 16 LS Contribution 365.15 15.07 5.50 5.50 Total: -1.00 -32.33 365.15 -7.13 -39.46 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -5.91 Total: 10.21 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -1.97 Total: -1.52 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.08 Total: -55.05 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: 0.36 Total: -15.07 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.33 -7.13 -39.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078611768.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.681 kcal (2) G-P(sol) polarization free energy of solvation -32.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds