Wall clock time and date at job start Tue Mar 31 2020 13:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 O 1.20920 * 124.57171 * 2 1 4 4 C 1.34168 * 112.19416 * 180.17763 * 3 2 1 5 5 C 1.48210 * 126.38492 * 179.82445 * 4 3 2 6 6 O 1.21493 * 120.00058 * 179.69031 * 5 4 3 7 7 N 1.34779 * 119.99858 * 359.68793 * 5 4 3 8 8 C 1.46503 * 120.00222 * 179.97438 * 7 5 4 9 9 H 1.09001 * 112.94398 * 333.10759 * 8 7 5 10 10 C 1.53950 * 113.65952 * 104.50431 * 8 7 5 11 11 C 1.53952 * 87.37851 * 89.78430 * 10 8 7 12 12 H 1.09002 * 113.65815 * 270.21969 * 11 10 8 13 13 N 1.46497 * 113.66301 * 139.25791 * 11 10 8 14 14 C 1.36934 * 119.99961 * 104.50379 * 13 11 10 15 15 H 1.07996 * 120.00336 * 0.02562 * 14 13 11 16 16 C 1.38820 * 119.99868 * 179.97438 * 14 13 11 17 17 N 1.31618 * 119.99734 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99874 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46939 * 90.00205 * 18 16 14 20 20 H 1.48501 * 109.47114 * 210.00043 * 18 16 14 21 21 H 1.48499 * 109.47599 * 330.00353 * 18 16 14 22 22 C 1.52909 * 86.78252 * 24.68886 * 11 10 8 23 23 C 1.52907 * 121.13536 * 209.38099 * 22 11 10 24 24 C 1.53958 * 86.78205 * 209.38733 * 23 22 11 25 25 C 1.52915 * 121.13447 * 100.82251 * 22 11 10 26 26 C 1.36311 * 107.23030 * 359.56325 * 4 3 2 27 27 C 1.34827 * 124.56632 * 179.69566 * 2 1 3 28 28 O 1.21981 * 127.14835 * 359.97438 * 27 2 1 29 29 H 1.09004 * 109.47251 * 270.30684 * 1 2 3 30 30 H 1.09004 * 109.47267 * 30.30279 * 1 2 3 31 31 H 1.08999 * 109.47259 * 150.30434 * 1 2 3 32 32 H 0.97001 * 119.99924 * 0.02562 * 7 5 4 33 33 H 1.09002 * 113.58302 * 335.14031 * 10 8 7 34 34 H 1.09004 * 113.57731 * 204.42204 * 10 8 7 35 35 H 0.97000 * 119.99771 * 284.50085 * 13 11 10 36 36 H 0.97002 * 119.99791 * 179.97438 * 17 16 14 37 37 H 1.08994 * 113.66316 * 323.85618 * 23 22 11 38 38 H 1.08997 * 113.66044 * 94.91866 * 23 22 11 39 39 H 1.09000 * 113.57861 * 270.13288 * 24 23 22 40 40 H 1.08990 * 113.65166 * 139.34938 * 24 23 22 41 41 H 1.09004 * 113.66330 * 265.09006 * 25 22 11 42 42 H 1.09001 * 113.65876 * 36.13855 * 25 22 11 43 43 H 1.08003 * 127.99605 * 180.24151 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 8 2.1511 0.9957 0.0000 4 6 3.4616 0.7081 -0.0039 5 6 4.5761 1.6851 -0.0086 6 8 5.7265 1.2943 -0.0062 7 7 4.3134 3.0070 -0.0158 8 6 5.4150 3.9728 -0.0199 9 1 6.3243 3.5821 0.4369 10 6 5.6478 4.6385 -1.3884 11 6 4.6510 5.7265 -0.9496 12 1 3.6162 5.5016 -1.2082 13 7 5.0528 7.0817 -1.3342 14 6 4.4318 7.7088 -2.3812 15 1 3.6455 7.2045 -2.9232 16 6 4.8122 8.9933 -2.7453 17 7 5.7695 9.6085 -2.0838 18 14 3.9656 9.8484 -4.1740 19 1 2.7913 10.6061 -3.6718 20 1 4.9172 10.7845 -4.8248 21 1 3.5152 8.8346 -5.1612 22 6 5.0173 5.3604 0.4891 23 6 4.0110 5.5273 1.6282 24 6 5.2229 5.7580 2.5492 25 6 5.9948 6.2142 1.2978 26 6 3.5769 -0.6501 0.0034 27 6 2.2299 -1.1102 0.0059 28 8 1.8472 -2.2684 0.0125 29 1 -0.3634 0.0055 1.0277 30 1 -0.3634 0.8873 -0.5185 31 1 -0.3634 -0.8927 -0.5091 32 1 3.3949 3.3189 -0.0174 33 1 5.2979 4.0401 -2.2296 34 1 6.6640 5.0081 -1.5262 35 1 5.7587 7.5349 -0.8471 36 1 6.0356 10.5059 -2.3384 37 1 3.3702 6.4025 1.5210 38 1 3.4545 4.6185 1.8569 39 1 5.6139 4.8424 2.9928 40 1 5.0712 6.5512 3.2811 41 1 7.0230 5.8541 1.2625 42 1 5.9116 7.2825 1.0976 43 1 4.4812 -1.2406 0.0065 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078611768.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:29 Heat of formation + Delta-G solvation = 52.542782 kcal Electronic energy + Delta-G solvation = -27242.533872 eV Core-core repulsion = 23293.896182 eV Total energy + Delta-G solvation = -3948.637689 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.24753 -42.03163 -40.32565 -39.37473 -36.47393 -35.87117 -35.40151 -33.93435 -33.40673 -31.72916 -29.09818 -26.72373 -26.69211 -25.51712 -25.11885 -24.57960 -23.53416 -21.93371 -21.31779 -20.07328 -19.51478 -19.39119 -18.93689 -18.23944 -17.34096 -16.87068 -16.60872 -16.37403 -16.19594 -16.07926 -15.82733 -15.51081 -15.05920 -15.03072 -14.79396 -14.28703 -14.22383 -13.87715 -13.65970 -13.50615 -13.35749 -13.16498 -12.82868 -12.71083 -12.59590 -12.14675 -12.01706 -11.85626 -11.78899 -11.39003 -11.33904 -11.12520 -11.10772 -10.84863 -10.66167 -10.15016 -9.68959 -8.92632 -7.92105 -5.18939 -0.63831 0.50020 1.35367 1.49281 1.49948 1.51487 1.57979 1.79558 2.18584 2.58222 3.33573 3.38119 3.42161 3.59670 3.67626 3.76083 3.84893 3.94263 4.02649 4.17171 4.27016 4.32221 4.34796 4.55867 4.62970 4.64078 4.69097 4.71690 4.80790 4.84609 4.94679 4.99666 5.10101 5.12054 5.16122 5.19895 5.49784 5.51484 5.60059 5.67668 6.11665 6.30562 6.43270 6.74812 6.81746 7.37794 8.16114 8.38234 9.31079 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015403 B = 0.003084 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.442387 B = 9076.920637 C = 9920.973830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.443 5.443 3 O 0.016 5.984 4 C 0.042 3.958 5 C 0.612 3.388 6 O -0.525 6.525 7 N -0.673 5.673 8 C 0.161 3.839 9 H 0.105 0.895 10 C -0.172 4.172 11 C 0.163 3.837 12 H 0.080 0.920 13 N -0.721 5.721 14 C -0.239 4.239 15 H 0.077 0.923 16 C -0.074 4.074 17 N -0.968 5.968 18 Si 0.966 3.034 19 H -0.288 1.288 20 H -0.300 1.300 21 H -0.271 1.271 22 C -0.114 4.114 23 C -0.116 4.116 24 C -0.127 4.127 25 C -0.114 4.114 26 C -0.243 4.243 27 C 0.468 3.532 28 O -0.565 6.565 29 H 0.100 0.900 30 H 0.122 0.878 31 H 0.107 0.893 32 H 0.420 0.580 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.377 0.623 36 H 0.250 0.750 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.402 -15.919 8.979 20.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.203 5.203 3 O 0.003 5.997 4 C -0.018 4.018 5 C 0.395 3.605 6 O -0.401 6.401 7 N -0.323 5.323 8 C 0.056 3.944 9 H 0.123 0.877 10 C -0.214 4.214 11 C 0.053 3.947 12 H 0.098 0.902 13 N -0.359 5.359 14 C -0.371 4.371 15 H 0.095 0.905 16 C -0.266 4.266 17 N -0.619 5.619 18 Si 0.796 3.204 19 H -0.215 1.215 20 H -0.227 1.227 21 H -0.196 1.196 22 C -0.116 4.116 23 C -0.154 4.154 24 C -0.164 4.164 25 C -0.152 4.152 26 C -0.268 4.268 27 C 0.267 3.733 28 O -0.449 6.449 29 H 0.119 0.881 30 H 0.140 0.860 31 H 0.126 0.874 32 H 0.258 0.742 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.211 0.789 36 H 0.058 0.942 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -9.274 -16.516 8.823 20.895 hybrid contribution -0.122 1.089 -0.926 1.434 sum -9.396 -15.427 7.897 19.714 Atomic orbital electron populations 1.22610 0.67956 1.07227 1.06301 1.46378 1.07107 0.99174 1.67670 1.84033 1.14733 1.20771 1.80141 1.23067 0.81816 0.95650 1.01230 1.16610 0.85197 0.81454 0.77254 1.90897 1.19509 1.78920 1.50762 1.45415 1.11359 1.03848 1.71665 1.21376 0.89710 0.86349 0.96982 0.87711 1.24171 1.01705 0.99110 0.96429 1.21740 0.96144 0.83946 0.92845 0.90193 1.42520 1.43138 1.13607 1.36655 1.19670 1.13621 0.96748 1.07087 0.90531 1.25474 1.00265 0.98434 1.02417 1.69798 1.33681 1.14051 1.44355 0.85240 0.77273 0.78299 0.79551 1.21488 1.22734 1.19568 1.23282 0.99492 0.94170 0.94664 1.22617 0.96071 1.02222 0.94460 1.22799 0.96227 1.01708 0.95705 1.22458 0.97877 0.98989 0.95846 1.23443 0.99782 0.93671 1.09910 1.18475 0.87299 0.85576 0.81903 1.90946 1.79697 1.17324 1.56950 0.88113 0.85997 0.87446 0.74249 0.92010 0.90828 0.78929 0.94162 0.90658 0.89585 0.89029 0.91113 0.91268 0.91305 0.78381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 11.22 127.77 1.43 2.15 16 2 N -0.44 -7.22 3.68 -492.74 -1.82 -9.04 16 3 O 0.02 0.24 10.69 70.42 0.75 1.00 16 4 C 0.04 0.78 7.25 24.47 0.18 0.96 16 5 C 0.61 13.17 7.84 86.89 0.68 13.85 16 6 O -0.52 -14.68 16.54 -3.69 -0.06 -14.74 16 7 N -0.67 -13.14 4.87 -443.44 -2.16 -15.30 16 8 C 0.16 3.96 4.09 45.33 0.19 4.15 16 9 H 0.10 2.66 7.55 -2.39 -0.02 2.65 16 10 C -0.17 -5.38 7.68 31.23 0.24 -5.14 16 11 C 0.16 5.59 4.28 45.28 0.19 5.78 16 12 H 0.08 2.62 8.12 -2.39 -0.02 2.60 16 13 N -0.72 -33.35 5.34 -321.56 -1.72 -35.07 16 14 C -0.24 -12.49 9.98 84.04 0.84 -11.65 16 15 H 0.08 3.81 7.83 -2.91 -0.02 3.79 16 16 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 17 N -0.97 -57.19 13.06 21.65 0.28 -56.91 16 18 Si 0.97 44.55 29.55 68.60 2.03 46.58 16 19 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 20 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 C -0.11 -3.03 0.91 -52.26 -0.05 -3.08 16 23 C -0.12 -2.57 7.60 30.89 0.23 -2.33 16 24 C -0.13 -2.74 8.08 31.23 0.25 -2.48 16 25 C -0.11 -3.19 7.16 30.89 0.22 -2.96 16 26 C -0.24 -5.05 10.94 22.84 0.25 -4.80 16 27 C 0.47 10.81 8.02 85.26 0.68 11.49 16 28 O -0.56 -16.98 17.84 -5.25 -0.09 -17.07 16 29 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 30 H 0.12 0.32 8.14 -2.38 -0.02 0.30 16 31 H 0.11 0.85 8.03 -2.39 -0.02 0.83 16 32 H 0.42 6.43 8.08 -92.71 -0.75 5.69 16 33 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 35 H 0.38 18.86 6.13 -92.71 -0.57 18.29 16 36 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 37 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.09 1.45 7.51 -2.39 -0.02 1.43 16 39 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.07 2.38 6.97 -2.39 -0.02 2.36 16 43 H 0.20 3.77 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -70.83 365.15 2.77 -68.06 By element: Atomic # 1 Polarization: 30.41 SS G_CDS: -0.26 Total: 30.15 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 5.81 Total: 2.34 kcal Atomic # 7 Polarization: -110.91 SS G_CDS: -5.41 Total: -116.32 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: 0.60 Total: -30.81 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -70.83 2.77 -68.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078611768.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.603 kcal (2) G-P(sol) polarization free energy of solvation -70.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds