Wall clock time and date at job start Tue Mar 31 2020 13:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 O 1.20925 * 124.56980 * 2 1 4 4 C 1.34169 * 112.19234 * 180.27589 * 3 2 1 5 5 C 1.48204 * 126.38464 * 179.71866 * 4 3 2 6 6 O 1.21497 * 119.99649 * 180.02562 * 5 4 3 7 7 N 1.34778 * 120.00082 * 359.97438 * 5 4 3 8 8 C 1.46497 * 120.00285 * 180.02562 * 7 5 4 9 9 H 1.09005 * 112.88056 * 26.84207 * 8 7 5 10 10 C 1.53942 * 113.66377 * 255.50031 * 8 7 5 11 11 C 1.53950 * 87.29225 * 270.25962 * 10 8 7 12 12 H 1.09001 * 113.66203 * 220.78705 * 11 10 8 13 13 N 1.46506 * 113.66209 * 89.83213 * 11 10 8 14 14 C 1.36937 * 119.99995 * 104.50695 * 13 11 10 15 15 H 1.07995 * 119.99915 * 359.97438 * 14 13 11 16 16 C 1.38814 * 119.99485 * 180.02562 * 14 13 11 17 17 N 1.31612 * 120.00210 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99559 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47425 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47057 * 120.00022 * 18 16 14 21 21 H 1.48499 * 109.47312 * 239.99723 * 18 16 14 22 22 C 1.52900 * 113.66448 * 158.30646 * 8 7 5 23 23 C 1.52908 * 121.14590 * 323.85575 * 22 8 7 24 24 C 1.53950 * 86.78500 * 209.37610 * 23 22 8 25 25 C 1.52915 * 121.14000 * 215.28673 * 22 8 7 26 26 C 1.36318 * 107.22850 * 359.72050 * 4 3 2 27 27 C 1.34826 * 124.56542 * 179.79854 * 2 1 3 28 28 O 1.21983 * 127.15086 * 0.02562 * 27 2 1 29 29 H 1.09003 * 109.47630 * 270.20107 * 1 2 3 30 30 H 1.09008 * 109.46932 * 30.20047 * 1 2 3 31 31 H 1.08996 * 109.47438 * 150.19489 * 1 2 3 32 32 H 0.97006 * 119.99735 * 0.02562 * 7 5 4 33 33 H 1.09006 * 113.58169 * 24.86135 * 10 8 7 34 34 H 1.09003 * 113.58389 * 155.65738 * 10 8 7 35 35 H 0.96996 * 119.99760 * 284.49845 * 13 11 10 36 36 H 0.97003 * 120.00199 * 180.02562 * 17 16 14 37 37 H 1.09003 * 113.66072 * 323.84662 * 23 22 8 38 38 H 1.08998 * 113.66023 * 94.89792 * 23 22 8 39 39 H 1.09004 * 113.57332 * 270.13015 * 24 23 22 40 40 H 1.08994 * 113.57908 * 139.33929 * 24 23 22 41 41 H 1.09001 * 113.66098 * 265.10060 * 25 22 8 42 42 H 1.08996 * 113.66067 * 36.15459 * 25 22 8 43 43 H 1.07998 * 127.99152 * 179.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1511 0.9957 0.0000 4 6 3.4616 0.7082 -0.0060 5 6 4.5760 1.6851 -0.0136 6 8 5.7264 1.2943 -0.0190 7 7 4.3134 3.0070 -0.0155 8 6 5.4149 3.9728 -0.0236 9 1 6.3220 3.5772 -0.4808 10 6 5.6538 4.6489 1.3386 11 6 4.6539 5.7319 0.8942 12 1 4.9531 6.7431 1.1697 13 7 3.2650 5.4317 1.2510 14 6 2.6693 6.0875 2.2951 15 1 3.2234 6.8256 2.8558 16 6 1.3535 5.8026 2.6334 17 7 0.6784 4.9026 1.9504 18 14 0.5410 6.6966 4.0582 19 1 1.5067 7.6517 4.6587 20 1 -0.6472 7.4380 3.5644 21 1 0.1177 5.7105 5.0846 22 6 5.0159 5.3545 -0.5427 23 6 4.0055 5.5108 -1.6796 24 6 4.7504 6.8069 -2.0474 25 6 5.9894 6.2031 -1.3615 26 6 3.5769 -0.6501 -0.0038 27 6 2.2299 -1.1103 0.0039 28 8 1.8472 -2.2685 0.0075 29 1 -0.3634 0.0036 1.0276 30 1 -0.3633 0.8883 -0.5170 31 1 -0.3634 -0.8917 -0.5108 32 1 3.3948 3.3190 -0.0116 33 1 5.3076 4.0570 2.1859 34 1 6.6702 5.0209 1.4685 35 1 2.7675 4.7685 0.7475 36 1 -0.2412 4.7038 2.1866 37 1 4.0788 4.7333 -2.4400 38 1 2.9838 5.6755 -1.3373 39 1 4.3609 7.6916 -1.5437 40 1 4.8726 6.9498 -3.1210 41 1 6.5526 6.9209 -0.7651 42 1 6.6203 5.6201 -2.0324 43 1 4.4812 -1.2406 -0.0075 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078611769.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:33 Heat of formation + Delta-G solvation = 76.101302 kcal Electronic energy + Delta-G solvation = -28126.321804 eV Core-core repulsion = 24178.705689 eV Total energy + Delta-G solvation = -3947.616115 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.01593 -40.80181 -39.03108 -38.06554 -35.43129 -34.27636 -33.87576 -32.42090 -32.14462 -30.02205 -28.04427 -25.61721 -25.07489 -24.27733 -23.84790 -23.33324 -22.19254 -20.55580 -20.10385 -18.93345 -18.30254 -17.93975 -17.18802 -17.03361 -16.09301 -15.43998 -15.27494 -15.10190 -14.94476 -14.67401 -14.42059 -14.12905 -13.70829 -13.57706 -13.34008 -13.31055 -13.05041 -12.83686 -12.70627 -12.21509 -12.00574 -11.65533 -11.47402 -11.02842 -10.97829 -10.83631 -10.53075 -10.24798 -10.18691 -10.08341 -9.95966 -9.88896 -9.78029 -9.56131 -9.00151 -8.79540 -8.46446 -7.17338 -5.96821 -3.25648 0.59883 1.65586 2.61970 2.80168 3.05838 3.32201 3.39207 3.40469 3.44033 4.37722 4.57746 4.63649 4.74330 4.87822 4.92095 5.03613 5.05362 5.12970 5.16215 5.18944 5.28101 5.42539 5.54830 5.73305 5.73921 5.79203 5.83582 5.89984 5.91985 5.92108 6.05181 6.08538 6.22401 6.38915 6.46638 6.55675 6.67196 6.76314 6.89046 7.39892 7.57542 7.67725 7.98889 8.04094 8.22224 9.33233 9.86029 10.19769 11.25453 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.009129 B = 0.005400 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3066.375681 B = 5183.460806 C = 7297.666654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.446 5.446 3 O 0.013 5.987 4 C 0.040 3.960 5 C 0.603 3.397 6 O -0.508 6.508 7 N -0.676 5.676 8 C 0.133 3.867 9 H 0.097 0.903 10 C -0.184 4.184 11 C 0.190 3.810 12 H 0.067 0.933 13 N -0.700 5.700 14 C -0.242 4.242 15 H 0.074 0.926 16 C -0.008 4.008 17 N -0.931 5.931 18 Si 0.908 3.092 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.292 1.292 22 C -0.127 4.127 23 C -0.129 4.129 24 C -0.134 4.134 25 C -0.105 4.105 26 C -0.249 4.249 27 C 0.478 3.522 28 O -0.533 6.533 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.415 0.585 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.379 0.621 36 H 0.256 0.744 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.968 -2.155 -7.970 9.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.208 5.208 3 O 0.001 5.999 4 C -0.020 4.020 5 C 0.385 3.615 6 O -0.385 6.385 7 N -0.327 5.327 8 C 0.029 3.971 9 H 0.115 0.885 10 C -0.226 4.226 11 C 0.077 3.923 12 H 0.086 0.914 13 N -0.340 5.340 14 C -0.373 4.373 15 H 0.092 0.908 16 C -0.205 4.205 17 N -0.578 5.578 18 Si 0.739 3.261 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.219 1.219 22 C -0.129 4.129 23 C -0.166 4.166 24 C -0.171 4.171 25 C -0.143 4.143 26 C -0.274 4.274 27 C 0.277 3.723 28 O -0.415 6.415 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.254 0.746 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.214 0.786 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 5.138 -2.701 -7.807 9.728 hybrid contribution -1.114 0.277 0.776 1.385 sum 4.024 -2.424 -7.031 8.456 Atomic orbital electron populations 1.22165 0.70517 1.05495 1.04850 1.46079 1.06060 0.99810 1.68807 1.84159 1.14981 1.20719 1.80044 1.23469 0.81963 0.96269 1.00273 1.16674 0.85363 0.81581 0.77900 1.90845 1.18247 1.78729 1.50633 1.45716 1.11733 1.04184 1.71050 1.21813 0.89165 0.87394 0.98748 0.88527 1.24297 1.00816 1.00796 0.96716 1.20905 0.86169 0.96118 0.89059 0.91448 1.42111 1.07246 1.47278 1.37322 1.19291 0.94737 1.16593 1.06680 0.90763 1.24718 0.96818 0.99344 0.99580 1.69628 1.10543 1.35540 1.42131 0.86106 0.79292 0.78855 0.81831 1.20478 1.21803 1.21869 1.23540 0.98328 0.94543 0.96517 1.22609 0.99710 0.97305 0.97018 1.22746 0.96751 0.97967 0.99660 1.22520 0.95859 0.98106 0.97850 1.23226 0.99606 0.93233 1.11338 1.18329 0.86689 0.85534 0.81734 1.90939 1.79145 1.15886 1.55518 0.89860 0.88377 0.87886 0.74624 0.90696 0.90017 0.78574 0.93456 0.90819 0.90090 0.89983 0.92055 0.91167 0.90153 0.79194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.14 11.22 59.84 0.67 1.81 16 2 N -0.45 -6.51 3.68 -69.77 -0.26 -6.76 16 3 O 0.01 0.19 10.69 16.83 0.18 0.37 16 4 C 0.04 0.61 7.25 -36.18 -0.26 0.34 16 5 C 0.60 9.68 7.84 -12.16 -0.10 9.59 16 6 O -0.51 -8.97 16.53 5.37 0.09 -8.88 16 7 N -0.68 -10.66 4.92 -54.21 -0.27 -10.93 16 8 C 0.13 2.00 4.08 -67.49 -0.28 1.73 16 9 H 0.10 1.40 7.54 -51.93 -0.39 1.01 16 10 C -0.18 -2.97 7.68 -25.75 -0.20 -3.17 16 11 C 0.19 3.33 4.35 -67.48 -0.29 3.03 16 12 H 0.07 1.20 8.12 -51.93 -0.42 0.77 16 13 N -0.70 -15.21 4.77 -52.99 -0.25 -15.46 16 14 C -0.24 -6.07 9.98 -15.06 -0.15 -6.22 16 15 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 16 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 17 N -0.93 -25.05 13.06 55.49 0.72 -24.32 16 18 Si 0.91 20.97 29.55 -169.99 -5.02 15.94 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 C -0.13 -1.81 0.77 -154.72 -0.12 -1.93 16 23 C -0.13 -1.80 7.18 -26.28 -0.19 -1.99 16 24 C -0.13 -1.63 8.08 -25.75 -0.21 -1.84 16 25 C -0.11 -1.23 7.84 -26.28 -0.21 -1.43 16 26 C -0.25 -3.72 10.94 -38.70 -0.42 -4.15 16 27 C 0.48 7.78 8.02 -14.66 -0.12 7.66 16 28 O -0.53 -9.98 17.84 4.93 0.09 -9.90 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.10 0.91 8.14 -51.92 -0.42 0.48 16 31 H 0.10 0.95 8.03 -51.93 -0.42 0.54 16 32 H 0.41 6.97 6.01 -40.82 -0.25 6.72 16 33 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.38 8.47 5.13 -40.82 -0.21 8.26 16 36 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 1.34 7.51 -51.93 -0.39 0.95 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.19 2.50 8.06 -52.49 -0.42 2.08 16 LS Contribution 362.91 15.07 5.47 5.47 Total: -1.00 -30.15 362.91 -7.06 -37.21 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -5.85 Total: 14.15 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -1.96 Total: 3.12 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: -0.05 Total: -57.48 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: 0.36 Total: -18.41 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.15 -7.06 -37.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078611769.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.306 kcal (2) G-P(sol) polarization free energy of solvation -30.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds