Wall clock time and date at job start Tue Mar 31 2020 13:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 O 1.20925 * 124.56980 * 2 1 4 4 C 1.34169 * 112.19234 * 180.27589 * 3 2 1 5 5 C 1.48204 * 126.38464 * 179.71866 * 4 3 2 6 6 O 1.21497 * 119.99649 * 180.02562 * 5 4 3 7 7 N 1.34778 * 120.00082 * 359.97438 * 5 4 3 8 8 C 1.46497 * 120.00285 * 180.02562 * 7 5 4 9 9 H 1.09005 * 112.88056 * 26.84207 * 8 7 5 10 10 C 1.53942 * 113.66377 * 255.50031 * 8 7 5 11 11 C 1.53950 * 87.29225 * 270.25962 * 10 8 7 12 12 H 1.09001 * 113.66203 * 220.78705 * 11 10 8 13 13 N 1.46506 * 113.66209 * 89.83213 * 11 10 8 14 14 C 1.36937 * 119.99995 * 104.50695 * 13 11 10 15 15 H 1.07995 * 119.99915 * 359.97438 * 14 13 11 16 16 C 1.38814 * 119.99485 * 180.02562 * 14 13 11 17 17 N 1.31612 * 120.00210 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99559 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47425 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47057 * 120.00022 * 18 16 14 21 21 H 1.48499 * 109.47312 * 239.99723 * 18 16 14 22 22 C 1.52900 * 113.66448 * 158.30646 * 8 7 5 23 23 C 1.52908 * 121.14590 * 323.85575 * 22 8 7 24 24 C 1.53950 * 86.78500 * 209.37610 * 23 22 8 25 25 C 1.52915 * 121.14000 * 215.28673 * 22 8 7 26 26 C 1.36318 * 107.22850 * 359.72050 * 4 3 2 27 27 C 1.34826 * 124.56542 * 179.79854 * 2 1 3 28 28 O 1.21983 * 127.15086 * 0.02562 * 27 2 1 29 29 H 1.09003 * 109.47630 * 270.20107 * 1 2 3 30 30 H 1.09008 * 109.46932 * 30.20047 * 1 2 3 31 31 H 1.08996 * 109.47438 * 150.19489 * 1 2 3 32 32 H 0.97006 * 119.99735 * 0.02562 * 7 5 4 33 33 H 1.09006 * 113.58169 * 24.86135 * 10 8 7 34 34 H 1.09003 * 113.58389 * 155.65738 * 10 8 7 35 35 H 0.96996 * 119.99760 * 284.49845 * 13 11 10 36 36 H 0.97003 * 120.00199 * 180.02562 * 17 16 14 37 37 H 1.09003 * 113.66072 * 323.84662 * 23 22 8 38 38 H 1.08998 * 113.66023 * 94.89792 * 23 22 8 39 39 H 1.09004 * 113.57332 * 270.13015 * 24 23 22 40 40 H 1.08994 * 113.57908 * 139.33929 * 24 23 22 41 41 H 1.09001 * 113.66098 * 265.10060 * 25 22 8 42 42 H 1.08996 * 113.66067 * 36.15459 * 25 22 8 43 43 H 1.07998 * 127.99152 * 179.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1511 0.9957 0.0000 4 6 3.4616 0.7082 -0.0060 5 6 4.5760 1.6851 -0.0136 6 8 5.7264 1.2943 -0.0190 7 7 4.3134 3.0070 -0.0155 8 6 5.4149 3.9728 -0.0236 9 1 6.3220 3.5772 -0.4808 10 6 5.6538 4.6489 1.3386 11 6 4.6539 5.7319 0.8942 12 1 4.9531 6.7431 1.1697 13 7 3.2650 5.4317 1.2510 14 6 2.6693 6.0875 2.2951 15 1 3.2234 6.8256 2.8558 16 6 1.3535 5.8026 2.6334 17 7 0.6784 4.9026 1.9504 18 14 0.5410 6.6966 4.0582 19 1 1.5067 7.6517 4.6587 20 1 -0.6472 7.4380 3.5644 21 1 0.1177 5.7105 5.0846 22 6 5.0159 5.3545 -0.5427 23 6 4.0055 5.5108 -1.6796 24 6 4.7504 6.8069 -2.0474 25 6 5.9894 6.2031 -1.3615 26 6 3.5769 -0.6501 -0.0038 27 6 2.2299 -1.1103 0.0039 28 8 1.8472 -2.2685 0.0075 29 1 -0.3634 0.0036 1.0276 30 1 -0.3633 0.8883 -0.5170 31 1 -0.3634 -0.8917 -0.5108 32 1 3.3948 3.3190 -0.0116 33 1 5.3076 4.0570 2.1859 34 1 6.6702 5.0209 1.4685 35 1 2.7675 4.7685 0.7475 36 1 -0.2412 4.7038 2.1866 37 1 4.0788 4.7333 -2.4400 38 1 2.9838 5.6755 -1.3373 39 1 4.3609 7.6916 -1.5437 40 1 4.8726 6.9498 -3.1210 41 1 6.5526 6.9209 -0.7651 42 1 6.6203 5.6201 -2.0324 43 1 4.4812 -1.2406 -0.0075 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078611769.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:32 Heat of formation + Delta-G solvation = 57.240101 kcal Electronic energy + Delta-G solvation = -28127.139687 eV Core-core repulsion = 24178.705689 eV Total energy + Delta-G solvation = -3948.433998 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.23919 -42.04454 -40.30043 -39.37243 -36.68723 -35.55292 -35.37451 -33.87896 -33.39709 -31.74630 -29.13826 -26.76146 -26.55363 -25.49473 -25.17620 -24.58736 -23.61186 -21.78696 -21.34338 -20.22802 -19.51654 -19.35146 -18.75075 -18.24769 -17.34314 -16.71959 -16.61561 -16.39154 -16.23115 -16.08494 -15.81814 -15.54488 -15.03112 -14.90265 -14.79121 -14.63766 -14.27596 -13.88596 -13.68934 -13.42734 -13.25822 -13.08346 -12.84130 -12.67874 -12.56475 -12.13122 -11.94957 -11.90722 -11.74122 -11.40337 -11.28830 -11.13494 -11.05122 -10.87618 -10.65640 -10.04671 -9.70188 -8.97225 -7.93805 -5.19954 -0.63965 0.51784 1.34232 1.47351 1.50325 1.56828 1.58348 1.79785 2.21267 2.55935 3.28888 3.39363 3.43200 3.57478 3.68989 3.82324 3.85093 3.95781 4.05160 4.19538 4.23909 4.28548 4.28824 4.55031 4.58932 4.65069 4.68623 4.75181 4.79524 4.89498 4.95954 5.01009 5.15689 5.17236 5.18581 5.29127 5.45907 5.59031 5.62819 5.64935 6.11877 6.30092 6.41341 6.70914 6.79858 7.37047 8.09401 8.33062 9.28613 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.009129 B = 0.005400 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3066.375681 B = 5183.460806 C = 7297.666654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.441 5.441 3 O 0.009 5.991 4 C 0.033 3.967 5 C 0.608 3.392 6 O -0.524 6.524 7 N -0.676 5.676 8 C 0.135 3.865 9 H 0.111 0.889 10 C -0.177 4.177 11 C 0.173 3.827 12 H 0.065 0.935 13 N -0.709 5.709 14 C -0.238 4.238 15 H 0.074 0.926 16 C -0.063 4.063 17 N -0.956 5.956 18 Si 0.961 3.039 19 H -0.271 1.271 20 H -0.295 1.295 21 H -0.300 1.300 22 C -0.118 4.118 23 C -0.131 4.131 24 C -0.129 4.129 25 C -0.090 4.090 26 C -0.241 4.241 27 C 0.469 3.531 28 O -0.563 6.563 29 H 0.089 0.911 30 H 0.114 0.886 31 H 0.119 0.881 32 H 0.410 0.590 33 H 0.045 0.955 34 H 0.110 0.890 35 H 0.374 0.626 36 H 0.251 0.749 37 H 0.087 0.913 38 H 0.048 0.952 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.104 0.896 43 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.392 -1.405 -8.890 11.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.201 5.201 3 O -0.003 6.003 4 C -0.027 4.027 5 C 0.390 3.610 6 O -0.401 6.401 7 N -0.325 5.325 8 C 0.030 3.970 9 H 0.129 0.871 10 C -0.218 4.218 11 C 0.062 3.938 12 H 0.083 0.917 13 N -0.348 5.348 14 C -0.370 4.370 15 H 0.092 0.908 16 C -0.256 4.256 17 N -0.606 5.606 18 Si 0.792 3.208 19 H -0.196 1.196 20 H -0.223 1.223 21 H -0.228 1.228 22 C -0.120 4.120 23 C -0.169 4.169 24 C -0.166 4.166 25 C -0.128 4.128 26 C -0.265 4.265 27 C 0.269 3.731 28 O -0.448 6.448 29 H 0.108 0.892 30 H 0.132 0.868 31 H 0.137 0.863 32 H 0.247 0.753 33 H 0.064 0.936 34 H 0.128 0.872 35 H 0.208 0.792 36 H 0.060 0.940 37 H 0.106 0.894 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.122 0.878 43 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 6.594 -1.905 -8.732 11.107 hybrid contribution -1.537 0.095 1.062 1.871 sum 5.056 -1.810 -7.670 9.364 Atomic orbital electron populations 1.22542 0.68492 1.07119 1.05823 1.46391 1.07082 0.99255 1.67391 1.84172 1.15211 1.21077 1.79844 1.23361 0.81918 0.96253 1.01132 1.16658 0.85254 0.81608 0.77468 1.90831 1.18811 1.78949 1.51536 1.45772 1.11693 1.04340 1.70711 1.21903 0.89354 0.87652 0.98054 0.87136 1.24224 1.01603 0.99789 0.96226 1.21137 0.84395 0.96340 0.91900 0.91721 1.42175 1.08944 1.47045 1.36678 1.19573 0.94760 1.15825 1.06861 0.90825 1.25320 0.97688 1.00705 1.01887 1.69734 1.10409 1.37007 1.43459 0.85259 0.78334 0.77768 0.79457 1.19566 1.22251 1.22757 1.23421 0.99701 0.94023 0.94823 1.22620 0.97923 0.99060 0.97263 1.22715 0.96445 0.96418 1.01072 1.22553 0.95420 0.97573 0.97294 1.23438 0.99766 0.93103 1.10241 1.18480 0.87278 0.85433 0.81923 1.90917 1.79703 1.16924 1.57296 0.89215 0.86789 0.86263 0.75260 0.93613 0.87213 0.79155 0.94044 0.89438 0.93309 0.91216 0.89849 0.89989 0.87778 0.77627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.98 11.22 127.77 1.43 3.41 16 2 N -0.44 -12.69 3.68 -492.74 -1.82 -14.50 16 3 O 0.01 0.28 10.69 70.41 0.75 1.04 16 4 C 0.03 0.99 7.25 24.47 0.18 1.17 16 5 C 0.61 19.05 7.84 86.89 0.68 19.73 16 6 O -0.52 -17.83 16.53 -3.71 -0.06 -17.89 16 7 N -0.68 -20.87 4.92 -443.72 -2.18 -23.05 16 8 C 0.13 3.80 4.08 45.28 0.18 3.98 16 9 H 0.11 2.88 7.54 -2.38 -0.02 2.86 16 10 C -0.18 -5.46 7.68 31.23 0.24 -5.22 16 11 C 0.17 5.90 4.35 45.28 0.20 6.10 16 12 H 0.06 2.23 8.12 -2.39 -0.02 2.21 16 13 N -0.71 -31.01 4.77 -321.55 -1.53 -32.54 16 14 C -0.24 -12.01 9.98 84.03 0.84 -11.17 16 15 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 16 C -0.06 -3.29 5.50 84.86 0.47 -2.83 16 17 N -0.96 -52.28 13.06 21.65 0.28 -52.00 16 18 Si 0.96 43.47 29.55 68.60 2.03 45.50 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.30 -13.43 7.11 99.48 0.71 -12.72 16 21 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 22 C -0.12 -3.12 0.77 -52.32 -0.04 -3.16 16 23 C -0.13 -3.47 7.18 30.88 0.22 -3.25 16 24 C -0.13 -2.81 8.08 31.23 0.25 -2.56 16 25 C -0.09 -1.78 7.84 30.89 0.24 -1.53 16 26 C -0.24 -7.04 10.94 22.84 0.25 -6.79 16 27 C 0.47 15.12 8.02 85.25 0.68 15.80 16 28 O -0.56 -21.06 17.84 -5.26 -0.09 -21.16 16 29 H 0.09 1.77 8.14 -2.39 -0.02 1.76 16 30 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16 31 H 0.12 2.10 8.03 -2.39 -0.02 2.08 16 32 H 0.41 13.80 6.01 -92.70 -0.56 13.25 16 33 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.37 17.01 5.13 -92.71 -0.48 16.53 16 36 H 0.25 13.43 8.31 -92.71 -0.77 12.66 16 37 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.05 1.62 7.51 -2.39 -0.02 1.60 16 39 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.21 5.21 8.06 -2.91 -0.02 5.18 16 Total: -1.00 -64.63 362.91 3.23 -61.40 By element: Atomic # 1 Polarization: 39.52 SS G_CDS: 0.02 Total: 39.55 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 5.83 Total: 13.66 kcal Atomic # 7 Polarization: -116.85 SS G_CDS: -5.25 Total: -122.10 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: 0.60 Total: -38.01 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -64.63 3.23 -61.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078611769.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.640 kcal (2) G-P(sol) polarization free energy of solvation -64.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds